List of probes and primers

2970 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
Aqui1197 S-O-Aqui-1197-a-A-20 extremophilic microbes 16S Aquificales ✔ ✘
Tcoc164 S-O-Tcoc-0164-a-A-20 extremophilic microbes 16S Thermococcales ✔ ✘
Eca58 — bacteria of medical or hygienical relevance 23S Enterococcus casseliflavus ✘ ✘
Edr58 — bacteria of medical or hygienical relevance 23S Enterococcus durans ✘ ✘
Ehr58 — bacteria of medical or hygienical relevance 23S Enterococcus hirae ✘ ✘
Efm09 — bacteria of medical or hygienical relevance 23S Enterococcus faecium ✘ ✘
Ema58i — bacteria of medical or hygienical relevance 23S Enterococcus malodoratus ✘ ✘
Esasu58i — bacteria of medical or hygienical relevance 23S Enterococcus saccharolyticus, Enterococcus sulfureus ✘ ✘
Poly_862 S-G-Poly-0862-a-A-18 symbiotic microbes 16S Polynucleobacter necessarius-cluster ✘ ✘
APL637 — higher taxonomic levels 16S Aplasma, acid mine drainage Thermoplasmatales ✔ ✘
GPL642 — higher taxonomic levels 16S Gplasma, acid mine drainage Thermoplasmatales ✔ ✘
TPL759 — higher taxonomic levels 16S Tplasma, Thermoplasma spp. ✔ ✘
BPL830 — higher taxonomic levels 16S Bplasma, acid mine drainage Thermoplasmatales ✔ ✘
EPL623 — higher taxonomic levels 16S Eplasma, acid mine drainage Thermoplasmatales ✘ ✘
Meiot836 — extremophilic microbes 16S Meiothermus sp. ✔ ✘
Proca438 S-G-Proca-0438-a-A-18 symbiotic microbes 16S Candidatus Procabacter sp. ✔ ✘
MB311 — methanogenic archaea 16S Methanobacteriales ✔ ✘
MB1174 — methanogenic archaea 16S Methanobacteriales (minus Methanothermus) ✔ ✘
MC504 — methanogenic archaea 16S Methanocaldococcaceae(+some Methanococcaceae) ✔ ✘
MC1109 — methanogenic archaea 16S Methanococcaceae ✔ ✘
MG1200b — methanogenic archaea 16S most Methanomicrobiales ✔ ✘
MS821 — methanogenic archaea 16S Methanosarcina ✔ ✘
MS1414 — methanogenic archaea 16S Methanosarcina, Methanococcoides, Methanolobus ✔ ✘
MSMX860 — methanogenic archaea 16S Methanosarcinales (all Methanosarcina and Methanosaeta) ✔ ✘
MX825 — methanogenic archaea 16S some Methanosaetaceae ✔ ✘