List of probes and primers

2970 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
CTH1258 — cellulose-decomposing bacteria 16S Group 2 clones (AC020 and AC033), closely related to Clostridium thermocellum ✔ ✘
CUE1240 — cellulose-decomposing bacteria 16S Group 3 clones (AC014 and AC036), closely related to Clostridium sp. strain XB90 ✔ ✘
CUE647 — cellulose-decomposing bacteria 16S Group 4 clones (AC007 and AC039) ✔ ✘
BCE182 — cellulose-decomposing bacteria 16S Group 5 clones (AC065 and MC049), closely related to Bacteroides cellulosolvens ✔ ✘
DEF988 S-S-Bact-1020-a-A-22 - 16S Defluvicoccus vanus-related organisms, cluster 2 ✔ ✘
FMR0732 — extremophilic microbes, iron- and manganese-oxidizing bacteria 16S some iron-oxidising acidophilic Actinobacteria and some acid mine drainage clones ✔ ✘
ABl0199 — extremophilic microbes 16S some acidophilic Acidobacteriaceae and an acid mine drainage clone ✔ ✘
ABl1002 — extremophilic microbes 16S some acidophilic Acidobacteriaceae ✔ ✘
TM1G0138 — extremophilic microbes, iron- and manganese-oxidizing bacteria 16S Group 1 Thiomonas species ✔ ✘
TM2G0138 — extremophilic microbes, iron- and manganese-oxidizing bacteria 16S Group 2 Thiomonas species ✔ ✘
WJ20646 — extremophilic microbes 16S acidophilic gamma-Proteobacteria WJ2 and PK51 and some acid mine drainage clones ✔ ✘
GALTS0084 — extremophilic microbes 16S acid mine drainage clones related to Gallionella ferruginea ✔ ✘
BSC0459 — extremophilic microbes 16S acid mine drainage beta-proteobacterial clones ✔ ✘
LGC0355 — extremophilic microbes 16S Firmicutes (Low G+C gram-positive bacteria) ✔ ✘
ATT0223 — extremophilic microbes, S-oxidizing (sulfur-oxidizing) bacteria 16S Acidithiobacillus thiooxidans ✔ ✘
Ntspa1431 S-*-Ntspa-1431-a-A-18 nitrite-oxidizing bacteria, bacteria of relevance in wastewater treatment 16S Sublineage I of the genus Nitrospira ✔ ✘
Ntspa1151 S-*-Ntspa-1151-a-A-20 nitrite-oxidizing bacteria, bacteria of relevance in wastewater treatment 16S Sublineage II of the genus Nitrospira ✔ ✘
Apr820 S-*-Apr-0820-a-A-21 anaerobic ammonium-oxidizing bacteria, bacteria of relevance in wastewater treatment 16S Cand. “Anammoxoglobus propionicus” ✔ ✘
E2d21002 S-*-Rhob-1002-a-A-18 bacteria of relevance in wastewater treatment 16S some Rhodobacteraceae ✔ ✘
E1e3 1150 S-*-Ualp-1150-a-A-18 bacteria of relevance in wastewater treatment 16S some unclassified Alphaproteobacteria ✔ ✘
Ualp-1109 S-*-Ualp-1109-a-A-18 bacteria of relevance in wastewater treatment 16S some unclassified Alphaproteobacteria ✔ ✘
Sphm-0742 S-*-Sphm-0742-a-A-18 bacteria of relevance in wastewater treatment 16S some Sphingomonadales ✔ ✘
Bete-1250 S-*-Bete-1250-a-A-18 bacteria of relevance in wastewater treatment 16S some unclassified Bacteroidetes ✔ ✘
Bete-1419 S-*-Bete-1419-a-A-18 bacteria of relevance in wastewater treatment 16S some unclassified Bacteroidetes ✔ ✘
Chro-1137 S-*-Chro-1137-a-A-18 bacteria of relevance in wastewater treatment 16S some Chromatiales ✔ ✘