List of probes and primers

2970 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
Caul-1262 S-*-Caul-1262-a-A-18 bacteria of relevance in wastewater treatment 16S some Caulobacterales ✔ ✘
Ubac-1430 S-*-Ubac-1430-a-A-18 bacteria of relevance in wastewater treatment 16S some unclassified Bacteria ✔ ✘
Ubac-1241 S-*-Ubac-1241-a-A-18 bacteria of relevance in wastewater treatment 16S some unclassified Bacteria ✔ ✘
uBet-0984 S-*-uBet-0984-a-A-18 bacteria of relevance in wastewater treatment 16S some unclassified Betaproteobacteria ✔ ✘
Ubet-0834 S-*-Ubet-0834-a-A-18 bacteria of relevance in wastewater treatment 16S some unclassified Betaproteobacteria ✔ ✘
Ubet-0990 S-*-Ubet-0990-a-A-21 bacteria of relevance in wastewater treatment 16S some unclassified Betaproteobacteria ✔ ✘
Rhoc-0998 S-*-Rhoc-0998-a-A-18 bacteria of relevance in wastewater treatment 16S some Rhodocyclaceae ✔ ✘
Rhoc-1425 S-*-Rhoc-1425-a-A-18 bacteria of relevance in wastewater treatment 16S some unclassified Rhodocyclaceae ✔ ✘
Thio-1032 S-*-Thio-1032-a-A-18 bacteria of relevance in wastewater treatment 16S some Thiobacillus and some unclassified Betaproteobacteria ✔ ✘
Ach-221 — bacteria of medical or hygienical relevance 16S Achromobacter xylosoxidans ✔ ✘
Alc-476 — bacteria of medical or hygienical relevance 16S Alcaligenes faecalis ✔ ✘
Univ907 S-*-Univ-0907-a-A-18 higher taxonomic levels 16S all organism ✘ ✘
Eub927 S-D-Eub-0927-a-A-18 higher taxonomic levels 16S most Bacteria ✘ ✘
NmII S-S-Nsom-0120-a-A-20 ammonia-oxidizing bacteria 16S Nitrosomonas communis lineage ✘ ✘
NmIII S-S-Nsom-0998-a-A-21 ammonia-oxidizing bacteria 16S Nitrosomonas marina lineage ✘ ✘
NmIV S-S-Nsom-1004-a-A-19 ammonia-oxidizing bacteria 16S Nitrosomonas cryotolerans lineage ✘ ✘
Nsr1145 S-*-Nsr-1145-a-A-18 nitrite-oxidizing bacteria 16S Nitrospira spp. ✘ ✘
Nsc825 S-*-Nsc-0825-a-A-18 ammonia-oxidizing bacteria 16S betaproteobacterial AOB ✘ ✘
Nsr989 S-S-Nsr-0989-a-A-18 nitrite-oxidizing bacteria 16S Nitrospira marina ✘ ✘
Nsn227 S-*-Nsn-0227-a-A-18 nitrite-oxidizing bacteria 16S Nitrospina gracilis ✘ ✘
Ncc214 S-S-Ncc-0214-a-A-18 nitrite-oxidizing bacteria 16S Nitrococcus mobilis ✘ ✘
Flavo1004 S-St-Iso8-1004-a-A-18 - 16S Flavobacterium isolate 8 ✔ ✘
CLOBU1022 S-S-Cl.bu.-1022-a-A-18 - 16S Clostridium butyricum, Elbe `river snowapos isolates 9.1, 9.2, 9.4 ✔ ✘
AERO1244 S-G-Aero-1244-a-A-21 higher taxonomic levels 16S Aeromonadaceae ✔ ✘
HGC236 — higher taxonomic levels 16S Actinobacteria ✘ ✘