List of probes and primers

2970 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
SPIRO657 — - 16S Sponge-associated phylogenetic lineages of the Spirochaetes phylum. ✘ ✘
SPIRO1009 — - 16S Sponge-associated phylogenetic lineages of the Spirochaetes phylum. ✘ ✘
CYL — - 16S Cylindrospermopsis raciborskii ✘ ✘
Cboid198 S-S-C.boid-0198-a-A-18 - 18S Candida boidinii ✔ ✘
S-*-CFB-0655-a-A-18 S-*-CFB-0655-a-A-18 - 16S OTU 8 of CFB (Cytophaga-Flavobacterium-Bacteroides) ✔ ✘
S-*-CFB-0730-a-A-18 S-*-CFB-0730-a-A-18 - 16S OTU 9 of CFB (Cytophaga-Flavobacterium-Bacteroides) ✔ ✘
S-*-GNS-0667-a-A-18 S-*-GNS-0667-a-A-18 - 16S OTU 11 and 12 of GNSB (green nonsulfur bacteria) ✔ ✘
S-*-Opitu-0744-a-A-18 S-*-Opitu-0744-a-A-18 - 16S OTU 13 of Verrucomicrobia ✔ ✘
ANA103 — - 16S Actinomyces naeslundii ✔ ✘
FUS664 — - 16S Fusobacterium nucleatum, ✔ ✘
MIT588 — - 16S Streptococcus oralis ✔ ✘
ODB1021 — - 16S Octadecabacter spp. ✔ ✘
RSHP995 — - 16S Roseobacter sp. strain Shippagan group ✔ ✘
GPU622 — - 16S Glaciecola punicea ✔ ✘
GVstr214 — - 16S Glaciecola sp. strain GVstr214.6 ✔ ✘
SF825 — - 16S Shewanella frigidimarina ✔ ✘
PSYB476 — - 16S Psychrobacter spp. ✔ ✘
MB-IC022 — - 16S Marinobacter sp. strain IC022 group ✔ ✘
PB223 — - 16S Polaribacter spp. ✔ ✘
GAN850 — - 16S Gallibacterium ✔ ✘
VP403 — - 16S Verrucomicrobium, most Prosthecobacter, and uncultured relatives ✔ ✘
SPA714 — - 16S Most Spartobacteria and uncultured relatives ✔ ✘
SPA649 — - 16S Uncultured humic and acidic lake Spartobacteria ✔ ✘
OPT1169 — - 16S Opitutus spp. and uncultured relatives ✔ ✘
Blsv1030 — - 16S Blastochloris viridis ✔ ✘