List of probes and primers

2970 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
Rhizo218 — - 16S JP66.1 group (Phyllobacterium) ✔ ✘
MALF-1 — - 16S Marine alpha cluster ✘ ✘
MALF-2 — - 16S Marine alpha cluster ✘ ✘
RSB67 — - 16S Subgroup of marine alpha cluster ✘ ✘
KT13 — - 16S Subgroup of marine alpha cluster ✘ ✘
Lis-1255 — - 16S Genus Listeria, Bacillus thermosphacta, Bacillus campestris ✔ ✘
Salm-63 — - 23S Salmonella spp., Plesiomonas shigelloides ✔ ✘
BEG811 — - 16S Frasassi Beggiatoa clade ✔ ✘
MTB770 — - 16S Mycobacterium tuberculosis strains ✘ ✘
MTB226 — - 16S Mycobacterium tuberculosis strains ✘ ✘
MTB187 — - 16S Mycobacterium tuberculosis strains ✘ ✘
MAVP187 — - 16S Mycobacterium avium subsp. avium Mycobacterium avium subsp. paratuberculosis ✘ ✘
MAVP515 — - 23S Mycobacterium avium subsp. Avium Mycobacterium avium subsp. Paratuberculosis ✘ ✘
MAC2543 — - 23S Mycobacterium avium complex ✘ ✘
MIN351 — - 16S Mycobacterium intracellulare ✘ ✘
MIN1586 — - 23S Mycobacterium intracellulare ✘ ✘
18Alf-0218 S-*-18ALF-0218-a-A-18 - 16S Methanotrophic symbiont of Sphagnum mosses ✔ ✘
18Alf-1437 S-*-18ALF-1437-a-A-18 - 16S Methanotrophic symbiont of Sphagnum mosses ✔ ✘
SphEch_1249 — - 16S Sphingomonas echinoides ✘ ✘
SteMal_439 — - 16S Stenotrophomonas maltophilia ✘ ✘
SEEP1a-473 S-*-SP1a-0473-a-A-23 - 16S Desulfosarcina/Desulfococcus subgroup SEEP-SRB1a (ANME-2 partner) ✔ ✘
SEEP1a-1441 S-*-SP1a-1441-a-A-18 - 16S Desulfosarcina/Desulfococcus subgroup SEEP-SRB1a (ANME-2 partner) ✔ ✘
SEEP1c-1309 S-*-SP1c-1309-a-A-21 - 16S Desulfosarcina/Desulfococcus subgroup SEEP-SRB1c ✘ ✘
SEEP1f-153 S-*-SP1f-0153-a-A-18 - 16S Desulfosarcina/Desulfococcus subgroup SEEP-SRB1f ✔ ✘
Pedo_1250 — - 16S Pedomicrobium strains ✔ ✘