List of references at probeBase

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Reference title Pubmed-ID
Design and validation of 16S rRNA probes to enumerate members of the Clostridium leptum subgroup in human faecal microbiota. Lay C, Sutren M, Rochet V, Saunier K, Doré J, Rigottier-Gois L. Environmental microbiology. 2005. 15946290
Long-term population dynamics of phototrophic sulfur bacteria in the chemocline of Lake Cadagno, Switzerland. Tonolla M, Peduzzi R, Hahn D. Applied and environmental microbiology. 2005. 16000760
Diversity of bacteria growing in natural mineral water after bottling. Loy A, Beisker W, Meier H. Applied and environmental microbiology. 2005. 16000770
pH and peptide supply can radically alter bacterial populations and short-chain fatty acid ratios within microbial communities from the human colon. Walker AW, Duncan SH, McWilliam Leitch EC, Child MW, Flint HJ. Applied and environmental microbiology. 2005. 16000778
Gut symbiotic bacteria of the genus Burkholderia in the broad-headed bugs Riptortus clavatus and Leptocorisa chinensis (Heteroptera: Alydidae). Kikuchi Y, Meng XY, Fukatsu T. Applied and environmental microbiology. 2005. 16000818
Identity and ecophysiology of uncultured actinobacterial polyphosphate-accumulating organisms in full-scale enhanced biological phosphorus removal plants. Kong Y, Nielsen JL, Nielsen PH. Applied and environmental microbiology. 2005. 16000823
A bacterium belonging to the Rickettsiaceae family inhabits the cytoplasm of the marine ciliate Diophrys appendiculata (Ciliophora, Hypotrichia). Vannini C, Petroni G, Verni F, Rosati G. Microbial ecology. 2005. 16003470
Low intraspecific diversity in a polynucleobacter subcluster population numerically dominating bacterioplankton of a freshwater pond. Hahn MW, Pöckl M, Wu QL. Applied and environmental microbiology. 2005. 16085847
Methanotrophic symbionts provide carbon for photosynthesis in peat bogs. Raghoebarsing AA, Smolders AJ, Schmid MC, Rijpstra WI, Wolters-Arts M, Derksen J, Jetten MS, Schouten S, Sinninghe Damsté JS, Lamers LP, Roelofs JG, Op den Camp HJ, Strous M. Nature. 2005. 16121180
An update and optimisation of oligonucleotide probes targeting methanogenic Archaea for use in fluorescence in situ hybridisation (FISH). Crocetti G, Murto M, Björnsson L. Journal of microbiological methods. 2006. 16126291
Abundances, identity, and growth state of actinobacteria in mountain lakes of different UV transparency. Warnecke F, Sommaruga R, Sekar R, Hofer JS, Pernthaler J. Applied and environmental microbiology. 2005. 16151148
Intestinal bacterial communities that produce active estrogen-like compounds enterodiol and enterolactone in humans. Clavel T, Henderson G, Alpert CA, Philippe C, Rigottier-Gois L, Doré J, Blaut M. Applied and environmental microbiology. 2005. 16204524
Use of specific rRNA oligonucleotide probes for microscopic detection of Mycobacterium tuberculosis in culture and tissue specimens. St Amand AL, Frank DN, De Groote MA, Basaraba RJ, Orme IM, Pace NR. Journal of clinical microbiology. 2005. 16208021
Bacterial communities in petroleum oil in stockpiles. Yoshida N, Yagi K, Sato D, Watanabe N, Kuroishi T, Nishimoto K, Yanagida A, Katsuragi T, Kanagawa T, Kurane R, Tani Y. Journal of bioscience and bioengineering. 2005. 16233771
Molecular identification of an uncultured bacterium ("morphotype R") in meromictic Lake Cadagno, Switzerland. Tonolla M, Bottinelli M, Demarta A, Peduzzi R, Hahn D. FEMS microbiology ecology. 2005. 16329943
Investigation of an acetate-fed denitrifying microbial community by stable isotope probing, full-cycle rRNA analysis, and fluorescent in situ hybridization-microautoradiography. Ginige MP, Keller J, Blackall LL. Applied and environmental microbiology. 2005. 16332863
Identification of "Candidatus Thioturbo danicus," a microaerophilic bacterium that builds conspicuous veils on sulfidic sediments. Muyzer G, Yildirim E, van Dongen U, Kühl M, Thar R. Applied and environmental microbiology. 2005. 16332892
Nitrospira-like bacteria associated with nitrite oxidation in freshwater aquaria. Hovanec TA, Taylor LT, Blakis A, Delong EF. Applied and environmental microbiology. 1998. 16349486
Development and validation of a prototype 16S rRNA-based taxonomic microarray for Alphaproteobacteria. Sanguin H, Herrera A, Oger-Desfeux C, Dechesne A, Simonet P, Navarro E, Vogel TM, Moënne-Loccoz Y, Nesme X, Grundmann GL. Environmental microbiology. 2006. 16423016
Putative glycogen-accumulating organisms belonging to the Alphaproteobacteria identified through rRNA-based stable isotope probing. Meyer RL, Saunders AM, Blackall LL. Microbiology (Reading, England). 2006. 16436430
Cohn's Crenothrix is a filamentous methane oxidizer with an unusual methane monooxygenase. Stoecker K, Bendinger B, Schöning B, Nielsen PH, Nielsen JL, Baranyi C, Toenshoff ER, Daims H, Wagner M. Proceedings of the National Academy of Sciences of the United States of America. 2006. 16452171
Single-stranded conformational polymorphism for separation of mixed rRNAS (rRNA-SSCP): a new method for profiling microbial communities. MacGregor BJ, Amann R. Systematic and applied microbiology. 2006. 16460898
"Candidatus Thiobios zoothamnicoli," an ectosymbiotic bacterium covering the giant marine ciliate Zoothamnium niveum. Rinke C, Schmitz-Esser S, Stoecker K, Nussbaumer AD, Molnár DA, Vanura K, Wagner M, Horn M, Ott JA, Bright M. Applied and environmental microbiology. 2006. 16517650
Macroscopic streamer growths in acidic, metal-rich mine waters in north wales consist of novel and remarkably simple bacterial communities. Hallberg KB, Coupland K, Kimura S, Johnson DB. Applied and environmental microbiology. 2006. 16517651
Non-sulfate-reducing, syntrophic bacteria affiliated with desulfotomaculum cluster I are widely distributed in methanogenic environments. Imachi H, Sekiguchi Y, Kamagata Y, Loy A, Qiu YL, Hugenholtz P, Kimura N, Wagner M, Ohashi A, Harada H. Applied and environmental microbiology. 2006. 16517657