List of references at probeBase

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Reference title Pubmed-ID
Succession of sulfur-oxidizing bacteria in the microbial community on corroding concrete in sewer systems. Okabe S, Odagiri M, Ito T, Satoh H. Applied and environmental microbiology. 2007. 17142362
Lineages of acidophilic archaea revealed by community genomic analysis. Baker BJ, Tyson GW, Webb RI, Flanagan J, Hugenholtz P, Allen EE, Banfield JF. Science (New York, N.Y.). 2006. 17185602
Identification and cultivation of anaerobic, syntrophic long-chain fatty acid-degrading microbes from mesophilic and thermophilic methanogenic sludges. Hatamoto M, Imachi H, Ohashi A, Harada H. Applied and environmental microbiology. 2007. 17189450
The SAR92 clade: an abundant coastal clade of culturable marine bacteria possessing proteorhodopsin. Stingl U, Desiderio RA, Cho JC, Vergin KL, Giovannoni SJ. Applied and environmental microbiology. 2007. 17293499
Identity, abundance and ecophysiology of filamentous Chloroflexi species present in activated sludge treatment plants. Kragelund C, Levantesi C, Borger A, Thelen K, Eikelboom D, Tandoi V, Kong Y, van der Waarde J, Krooneman J, Rossetti S, Thomsen TR, Nielsen PH. FEMS microbiology ecology. 2007. 17381520
The candidate phylum 'Termite Group 1' of bacteria: phylogenetic diversity, distribution, and endosymbiont members of various gut flagellated protists. Ohkuma M, Sato T, Noda S, Ui S, Kudo T, Hongoh Y. FEMS microbiology ecology. 2007. 17391329
Improved 16S rRNA-targeted probe set for analysis of sulfate-reducing bacteria by fluorescence in situ hybridization. Lücker S, Steger D, Kjeldsen KU, MacGregor BJ, Wagner M, Loy A. Journal of microbiological methods. 2007. 17408790
Phylogenetic composition of Rocky Mountain endolithic microbial ecosystems. Walker JJ, Pace NR. Applied and environmental microbiology. 2007. 17416689
Co-existence of physiologically similar sulfate-reducing bacteria in a full-scale sulfidogenic bioreactor fed with a single organic electron donor. Dar SA, Stams AJ, Kuenen JG, Muyzer G. Applied microbiology and biotechnology. 2007. 17440719
In situ detection of novel Acidobacteria in microbial mats from a chemolithoautotrophically based cave ecosystem (Lower Kane Cave, WY, USA). Meisinger DB, Zimmermann J, Ludwig W, Schleifer KH, Wanner G, Schmid M, Bennett PC, Engel AS, Lee NM. Environmental microbiology. 2007. 17504489
Bacterial taxa abundance pattern in an industrial wastewater treatment system determined by the full rRNA cycle approach. Figuerola EL, Erijman L. Environmental microbiology. 2007. 17564611
Microbial community dynamics in a chemolithotrophic denitrification reactor inoculated with methanogenic granular sludge. Fernández N, Sierra-Alvarez R, Field JA, Amils R, Sanz JL. Chemosphere. 2008. 17689587
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Frank DN, St Amand AL, Feldman RA, Boedeker EC, Harpaz N, Pace NR. Proceedings of the National Academy of Sciences of the United States of America. 2007. 17699621
Design and performance of a 16S rRNA-targeted oligonucleotide probe for detection of members of the genus Bdellovibrio by fluorescence in situ hybridization. Mahmoud KK, McNeely D, Elwood C, Koval SF. Applied and environmental microbiology. 2007. 17905886
Phylogenetic diversity of 'Endomicrobia' and their specific affiliation with termite gut flagellates. Ikeda-Ohtsubo W, Desai M, Stingl U, Brune A. Microbiology (Reading, England). 2007. 17906144
Microbial population structures in the deep marine biosphere. Huber JA, Mark Welch DB, Morrison HG, Huse SM, Neal PR, Butterfield DA, Sogin ML. Science (New York, N.Y.). 2007. 17916733
Quantitative distributions of Epsilonproteobacteria and a Sulfurimonas subgroup in pelagic redoxclines of the central Baltic Sea. Grote J, Labrenz M, Pfeiffer B, Jost G, Jürgens K. Applied and environmental microbiology. 2007. 17921285
Increased amount of Bifidobacterium thermacidophilum and Megasphaera elsdenii in the colonic microbiota of pigs fed a swine dysentery preventive diet containing chicory roots and sweet lupine. Mølbak L, Thomsen LE, Jensen TK, Bach Knudsen KE, Boye M. Journal of applied microbiology. 2007. 17953596
Diversity and in situ quantification of Acidobacteria subdivision 1 in an acidic mining lake. Kleinsteuber S, Müller FD, Chatzinotas A, Wendt-Potthoff K, Harms H. FEMS microbiology ecology. 2008. 18028401
Candidatus 'Brocadia fulgida': an autofluorescent anaerobic ammonium oxidizing bacterium. Kartal B, van Niftrik L, Rattray J, van de Vossenberg JL, Schmid MC, Sinninghe Damsté J, Jetten MS, Strous M. FEMS microbiology ecology. 2008. 18081590
Evaluations of different hypervariable regions of archaeal 16S rRNA genes in profiling of methanogens by Archaea-specific PCR and denaturing gradient gel electrophoresis. Yu Z, García-González R, Schanbacher FL, Morrison M. Applied and environmental microbiology. 2008. 18083874
The Mucin degrader Akkermansia muciniphila is an abundant resident of the human intestinal tract. Derrien M, Collado MC, Ben-Amor K, Salminen S, de Vos WM. Applied and environmental microbiology. 2008. 18083887
A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring. Hatzenpichler R, Lebedeva EV, Spieck E, Stoecker K, Richter A, Daims H, Wagner M. Proceedings of the National Academy of Sciences of the United States of America. 2008. 18250313
Novel lineages of Planctomycetes densely colonize the alkaline gut of soil-feeding termites (Cubitermes spp.). Köhler T, Stingl U, Meuser K, Brune A. Environmental microbiology. 2008. 18279348
Antibiotic-resistant soil bacteria in transgenic plant fields. Demanèche S, Sanguin H, Poté J, Navarro E, Bernillon D, Mavingui P, Wildi W, Vogel TM, Simonet P. Proceedings of the National Academy of Sciences of the United States of America. 2008. 18292221