List of references at probeBase

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Identity, abundance and ecophysiology of filamentous bacteria belonging to the Bacteroidetes present in activated sludge plants. Kragelund C, Levantesi C, Borger A, Thelen K, Eikelboom D, Tandoi V, Kong Y, Krooneman J, Larsen P, Thomsen TR, Nielsen PH. Microbiology (Reading, England). 2008. 18310034
High prevalence of treponemes in bovine digital dermatitis-a molecular epidemiology. Nordhoff M, Moter A, Schrank K, Wieler LH. Veterinary microbiology. 2008. 18524502
Development of a 16S rRNA gene-based prototype microarray for the detection of selected actinomycetes genera. Kyselková M, Kopecký J, Felföldi T, Cermák L, Omelka M, Grundmann GL, Moënne-Loccoz Y, Ságová-Marecková M. Antonie van Leeuwenhoek. 2008. 18600470
Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP). Dowd SE, Callaway TR, Wolcott RD, Sun Y, McKeehan T, Hagevoort RG, Edrington TS. BMC microbiology. 2008. 18652685
Comparative analysis of human gut microbiota by barcoded pyrosequencing. Andersson AF, Lindberg M, Jakobsson H, Bäckhed F, Nyrén P, Engstrand L. PloS one. 2008. 18665274
Multiple bacterial symbionts in two species of co-occurring gutless oligochaete worms from Mediterranean sea grass sediments. Ruehland C, Blazejak A, Lott C, Loy A, Erséus C, Dubilier N. Environmental microbiology. 2008. 18764872
Sulphide oxidation to elemental sulphur in a membrane bioreactor: performance and characterization of the selected microbial sulphur-oxidizing community. Vannini C, Munz G, Mori G, Lubello C, Verni F, Petroni G. Systematic and applied microbiology. 2008. 18814984
Pyrosequencing analysis of the oral microflora of healthy adults. Keijser BJ, Zaura E, Huse SM, van der Vossen JM, Schuren FH, Montijn RC, ten Cate JM, Crielaard W. Journal of dental research. 2008. 18946007
The influence of sex, handedness, and washing on the diversity of hand surface bacteria. Fierer N, Hamady M, Lauber CL, Knight R. Proceedings of the National Academy of Sciences of the United States of America. 2008. 19004758
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. Dethlefsen L, Huse S, Sogin ML, Relman DA. PLoS biology. 2008. 19018661
Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. Huse SM, Dethlefsen L, Huber JA, Mark Welch D, Welch DM, Relman DA, Sogin ML. PLoS genetics. 2008. 19023400
Candidatus Desulfovibrio trichonymphae, a novel intracellular symbiont of the flagellate Trichonympha agilis in termite gut. Sato T, Hongoh Y, Noda S, Hattori S, Ui S, Ohkuma M. Environmental microbiology. 2009. 19170725
Enrichment of a mixed bacterial culture with a high polyhydroxyalkanoate storage capacity. Johnson K, Jiang Y, Kleerebezem R, Muyzer G, van Loosdrecht MC. Biomacromolecules. 2009. 19193058
Bacterial, archaeal and eukaryotic diversity of smooth and pustular microbial mat communities in the hypersaline lagoon of Shark Bay. Allen MA, Goh F, Burns BP, Neilan BA. Geobiology. 2009. 19200148
Insights into the diversity of eukaryotes in acid mine drainage biofilm communities. Baker BJ, Tyson GW, Goosherst L, Banfield JF. Applied and environmental microbiology. 2009. 19201960
Filamentous bacterium Eikelboom type 0092 in activated sludge plants in Australia is a member of the phylum Chloroflexi. Speirs L, Nittami T, McIlroy S, Schroeder S, Seviour RJ. Applied and environmental microbiology. 2009. 19218415
Widespread occurrence of an intranuclear bacterial parasite in vent and seep bathymodiolin mussels. Zielinski FU, Pernthaler A, Duperron S, Raggi L, Giere O, Borowski C, Dubilier N. Environmental microbiology. 2009. 19226299
Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge. Rivière D, Desvignes V, Pelletier E, Chaussonnerie S, Guermazi S, Weissenbach J, Li T, Camacho P, Sghir A. The ISME journal. 2009. 19242531
Uncultivated magnetotactic cocci from yuandadu park in beijing, china. Lin W, Pan Y. Applied and environmental microbiology. 2009. 19376904
16S rRNA gene-based phylogenetic microarray for simultaneous identification of members of the genus Burkholderia. Schönmann S, Loy A, Wimmersberger C, Sobek J, Aquino C, Vandamme P, Frey B, Rehrauer H, Eberl L. Environmental microbiology. 2009. 19396938
Assessment of the microbial diversity at the surface of Livarot cheese using culture-dependent and independent approaches. Mounier J, Monnet C, Jacques N, Antoinette A, Irlinger F. International journal of food microbiology. 2009. 19481828
Linking microbial community function to phylogeny of sulfate-reducing Deltaproteobacteria in marine sediments by combining stable isotope probing with magnetic-bead capture hybridization of 16S rRNA. Miyatake T, MacGregor BJ, Boschker HT. Applied and environmental microbiology. 2009. 19502447
Comparison of rhizobacterial community composition in soil suppressive or conducive to tobacco black root rot disease. Kyselková M, Kopecký J, Frapolli M, Défago G, Ságová-Marecková M, Grundmann GL, Moënne-Loccoz Y. The ISME journal. 2009. 19554036
Detection of iron-depositing Pedomicrobium species in native biofilms from the Odertal National Park by a new, specific FISH probe. Braun B, Richert I, Szewzyk U. Journal of microbiological methods. 2009. 19638289
"Candidatus Paraholospora nucleivisitans", an intracellular bacterium in Paramecium sexaurelia shuttles between the cytoplasm and the nucleus of its host. Eschbach E, Pfannkuchen M, Schweikert M, Drutschmann D, Brümmer F, Fokin S, Ludwig W, Görtz HD. Systematic and applied microbiology. 2009. 19679418