List of references at probeBase

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Reference title Pubmed-ID
Application and validation of DNA microarrays for the 16S rRNA-based analysis of marine bacterioplankton. Peplies J, Lau SC, Pernthaler J, Amann R, Glöckner FO. Environmental microbiology. 2004. 15142252
Collimonas fungivorans gen. nov., sp. nov., a chitinolytic soil bacterium with the ability to grow on living fungal hyphae. de Boer W, Leveau JH, Kowalchuk GA, Klein Gunnewiek PJ, Abeln EC, Figge MJ, Sjollema K, Janse JD, van Veen JA. International journal of systematic and evolutionary microbiology. 2004. 15143036
Order-specific 16S rRNA-targeted oligonucleotide probes for (hyper)thermophilic archaea and bacteria. Rusch A, Amend JP. Extremophiles : life under extreme conditions. 2004. 15168171
Discovery of the novel candidate phylum "Poribacteria" in marine sponges. Fieseler L, Horn M, Wagner M, Hentschel U. Applied and environmental microbiology. 2004. 15184179
Novel epibiotic thiothrix bacterium on a marine amphipod. Gillan DC, Dubilier N. Applied and environmental microbiology. 2004. 15184190
Design and application of two oligonucleotide probes for the identification of Geodermatophilaceae strains using fluorescence in situ hybridization (FISH). Urzì C, La Cono V, Stackebrandt E. Environmental microbiology. 2004. 15186346
Simultaneous discrimination between 15 fish pathogens by using 16S ribosomal DNA PCR and DNA microarrays. Warsen AE, Krug MJ, LaFrentz S, Stanek DR, Loge FJ, Call DR. Applied and environmental microbiology. 2004. 15240304
Combining catalyzed reporter deposition-fluorescence in situ hybridization and microautoradiography to detect substrate utilization by bacteria and Archaea in the deep ocean. Teira E, Reinthaler T, Pernthaler A, Pernthaler J, Herndl GJ. Applied and environmental microbiology. 2004. 15240332
Symbionts of the gut flagellate Staurojoenina sp. from Neotermes cubanus represent a novel, termite-associated lineage of Bacteroidales: description of 'Candidatus Vestibaculum illigatum'. Stingl U, Maass A, Radek R, Brune A. Microbiology (Reading, England). 2004. 15256565
Dominant microbial composition and its vertical distribution in saline meromictic Lake Kaiike (Japan) as revealed by quantitative oligonucleotide probe membrane hybridization. Koizumi Y, Kojima H, Fukui M. Applied and environmental microbiology. 2004. 15294833
Coexistence of Wolbachia with Buchnera aphidicola and a secondary symbiont in the aphid Cinara cedri. Gómez-Valero L, Soriano-Navarro M, Pérez-Brocal V, Heddi A, Moya A, García-Verdugo JM, Latorre A. Journal of bacteriology. 2004. 15375144
Metabolically active eukaryotic communities in extremely acidic mine drainage. Baker BJ, Lutz MA, Dawson SC, Bond PL, Banfield JF. Applied and environmental microbiology. 2004. 15466574
Novel, attached, sulfur-oxidizing bacteria at shallow hydrothermal vents possess vacuoles not involved in respiratory nitrate accumulation. Kalanetra KM, Huston SL, Nelson DC. Applied and environmental microbiology. 2004. 15574952
Filamentous Alphaproteobacteria associated with bulking in industrial wastewater treatment plants. Levantesi C, Beimfohr C, Geurkink B, Rossetti S, Thelen K, Krooneman J, Snaidr J, van der Waarde J, Tandoi V. Systematic and applied microbiology. 2004. 15612630
Discrepancies in the widely applied GAM42a fluorescence in situ hybridisation probe for Gammaproteobacteria. Siyambalapitiya N, Blackall LL. FEMS microbiology letters. 2005. 15621461
Recovery of an environmental Chlamydia strain from activated sludge by co-cultivation with Acanthamoeba sp. Collingro A, Poppert S, Heinz E, Schmitz-Esser S, Essig A, Schweikert M, Wagner M, Horn M. Microbiology (Reading, England). 2005. 15632447
Diversity and vertical distribution of cultured and uncultured Deltaproteobacteria in an intertidal mud flat of the Wadden Sea. Mussmann M, Ishii K, Rabus R, Amann R. Environmental microbiology. 2005. 15683401
Identification of Meiothermus as the dominant genus in a storage system for spent nuclear fuel. Masurat P, Fru EC, Pedersen K. Journal of applied microbiology. 2005. 15715877
16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the betaproteobacterial order "Rhodocyclales". Loy A, Schulz C, Lücker S, Schöpfer-Wendels A, Stoecker K, Baranyi C, Lehner A, Wagner M. Applied and environmental microbiology. 2005. 15746340
"Endomicrobia": cytoplasmic symbionts of termite gut protozoa form a separate phylum of prokaryotes. Stingl U, Radek R, Yang H, Brune A. Applied and environmental microbiology. 2005. 15746350
Coexistence of bacterial sulfide oxidizers, sulfate reducers, and spirochetes in a gutless worm (Oligochaeta) from the Peru margin. Blazejak A, Erséus C, Amann R, Dubilier N. Applied and environmental microbiology. 2005. 15746360
Visualization of Helicobacter species within the murine cecal mucosa using specific fluorescence in situ hybridization. Chan V, Crocetti G, Grehan M, Zhang L, Danon S, Lee A, Mitchell H. Helicobacter. 2005. 15810941
Polynucleobacter bacteria in the brackish-water species Euplotes harpa (Ciliata Hypotrichia). Vannini C, Petroni G, Verni F, Rosati G. The Journal of eukaryotic microbiology. -. 15817116
Design and application of an oligonucleotide microarray for the investigation of compost microbial communities. Franke-Whittle IH, Klammer SH, Insam H. Journal of microbiological methods. 2005. 15823393
Oligonucleotide microarray for identification of Enterococcus species. Lehner A, Loy A, Behr T, Gaenge H, Ludwig W, Wagner M, Schleifer KH. FEMS microbiology letters. 2005. 15869972