List of references at probeBase

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Reference title Pubmed-ID
Specific detection of Dehalococcoides species by fluorescence in situ hybridization with 16S rRNA-targeted oligonucleotide probes. Yang Y, Zeyer J. Applied and environmental microbiology. 2003. 12732561
Enumeration of Bacteroides species in human faeces by fluorescent in situ hybridisation combined with flow cytometry using 16S rRNA probes. Rigottier-Gois L, Rochet V, Garrec N, Suau A, Doré J. Systematic and applied microbiology. 2003. 12747418
Oligonucleotide probes that detect quantitatively significant groups of butyrate-producing bacteria in human feces. Hold GL, Schwiertz A, Aminov RI, Blaut M, Flint HJ. Applied and environmental microbiology. 2003. 12839823
Phylogenetic analysis identifies the 'megabacterium' of birds as a novel anamorphic ascomycetous yeast, Macrorhabdus ornithogaster gen. nov., sp. nov. Tomaszewski EK, Logan KS, Snowden KF, Kurtzman CP, Phalen DN. International journal of systematic and evolutionary microbiology. 2003. 12892150
Development of specific fluorescent oligonucleotide probes for in situ identification of wine lactic acid bacteria. Blasco L, Ferrer S, Pardo I. FEMS microbiology letters. 2003. 12900029
Characterization of microbial communities in gas industry pipelines. Zhu XY, Lubeck J, Kilbane JJ. Applied and environmental microbiology. 2003. 12957923
Filamentous "Epsilonproteobacteria" dominate microbial mats from sulfidic cave springs. Engel AS, Lee N, Porter ML, Stern LA, Bennett PC, Wagner M. Applied and environmental microbiology. 2003. 12957939
Extremely acidophilic protists from acid mine drainage host Rickettsiales-lineage endosymbionts that have intervening sequences in their 16S rRNA genes. Baker BJ, Hugenholtz P, Dawson SC, Banfield JF. Applied and environmental microbiology. 2003. 12957940
Development and use of fluorescent 16S rRNA-targeted probes for the specific detection of Methylophaga species by in situ hybridization in marine sediments. Janvier M, Regnault B, Grimont P. Research in microbiology. 2003. 14499934
Detection of the free-living forms of sulfide-oxidizing gill endosymbionts in the lucinid habitat (Thalassia testudinum environment). Gros O, Liberge M, Heddi A, Khatchadourian C, Felbeck H. Applied and environmental microbiology. 2003. 14532089
Fingerprinting microbial assemblages from the oxic/anoxic chemocline of the Black Sea. Vetriani C, Tran HV, Kerkhof LJ. Applied and environmental microbiology. 2003. 14602603
Diversity and structure of bacterial communities in Arctic versus Antarctic pack ice. Brinkmeyer R, Knittel K, Jürgens J, Weyland H, Amann R, Helmke E. Applied and environmental microbiology. 2003. 14602620
The isotope array, a new tool that employs substrate-mediated labeling of rRNA for determination of microbial community structure and function. Adamczyk J, Hesselsoe M, Iversen N, Horn M, Lehner A, Nielsen PH, Schloter M, Roslev P, Wagner M. Applied and environmental microbiology. 2003. 14602652
Detection of Gallibacterium spp. in chickens by fluorescent 16S rRNA in situ hybridization. Bojesen AM, Christensen H, Nielsen OL, Olsen JE, Bisgaard M. Journal of clinical microbiology. 2003. 14605154
Review and re-analysis of domain-specific 16S primers. Baker GC, Smith JJ, Cowan DA. Journal of microbiological methods. 2003. 14607398
Molecular approaches for the detection and identification of bifidobacteria and lactobacilli in the human gastrointestinal tract. Satokari RM, Vaughan EE, Smidt H, Saarela M, Mättö J, de Vos WM. Systematic and applied microbiology. 2003. 14666986
Multiplex FISH analysis of a six-species bacterial biofilm. Thurnheer T, Gmür R, Guggenheim B. Journal of microbiological methods. 2004. 14706749
Use of stable-isotope probing, full-cycle rRNA analysis, and fluorescence in situ hybridization-microautoradiography to study a methanol-fed denitrifying microbial community. Ginige MP, Hugenholtz P, Daims H, Wagner M, Keller J, Blackall LL. Applied and environmental microbiology. 2004. 14711691
Gingival crevice microbiota from Chinese patients with gingivitis or necrotizing ulcerative gingivitis. Gmür R, Wyss C, Xue Y, Thurnheer T, Guggenheim B. European journal of oral sciences. 2004. 14871191
Identification of planctomycetes with order-, genus-, and strain-specific 16S rRNA-targeted probes. Gade D, Schlesner H, Glöckner FO, Amann R, Pfeiffer S, Thomm M. Microbial ecology. 2004. 14994173
Ecophysiological interaction between nitrifying bacteria and heterotrophic bacteria in autotrophic nitrifying biofilms as determined by microautoradiography-fluorescence in situ hybridization. Kindaichi T, Ito T, Okabe S. Applied and environmental microbiology. 2004. 15006789
Demonstration of Brachyspira aalborgi lineages 2 and 3 in human colonic biopsies with intestinal spirochaetosis by specific fluorescent in situ hybridization. Jensen TK, Teglbjaerg PS, Lindboe CF, Boye M. Journal of medical microbiology. 2004. 15017292
'Candidatus Rhabdochlamydia porcellionis', an intracellular bacterium from the hepatopancreas of the terrestrial isopod Porcellio scaber (Crustacea: Isopoda). Kostanjsek R, Strus J, Drobne D, Avgustin G. International journal of systematic and evolutionary microbiology. 2004. 15023973
Micromanipulation and further identification of FISH-labelled microcolonies of a dominant denitrifying bacterium in activated sludge. Thomsen TR, Nielsen JL, Ramsing NB, Nielsen PH. Environmental microbiology. 2004. 15049920
Identification, detection, and spatial resolution of Clostridium populations responsible for cellulose degradation in a methanogenic landfill leachate bioreactor. Burrell PC, O'Sullivan C, Song H, Clarke WP, Blackall LL. Applied and environmental microbiology. 2004. 15066839