List of references at probeBase

Clear filter
Reference title Pubmed-ID
Detection and differentiation of chlamydiae by fluorescence in situ hybridization. Poppert S, Essig A, Marre R, Wagner M, Horn M. Applied and environmental microbiology. 2002. 12147510
Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples. Wang RF, Beggs ML, Robertson LH, Cerniglia CE. FEMS microbiology letters. 2002. 12167534
Filamentous Chloroflexi (green non-sulfur bacteria) are abundant in wastewater treatment processes with biological nutrient removal. Björnsson L, Hugenholtz P, Tyson GW, Blackall LL. Microbiology (Reading, England). 2002. 12177325
Quantification of uncultured Ruminococcus obeum-like bacteria in human fecal samples by fluorescent in situ hybridization and flow cytometry using 16S rRNA-targeted probes. Zoetendal EG, Ben-Amor K, Harmsen HJ, Schut F, Akkermans AD, de Vos WM. Applied and environmental microbiology. 2002. 12200269
Microscopic examination of distribution and phenotypic properties of phylogenetically diverse Chloroflexaceae-related bacteria in hot spring microbial mats. Nübel U, Bateson MM, Vandieken V, Wieland A, Kühl M, Ward DM. Applied and environmental microbiology. 2002. 12200318
Phylogenetic analysis and in situ identification of "Nostocoida limicola"-like filamentous bacteria in activated sludge from industrial wastewater treatment plants. Snaidr I, Beimfohr C, Levantesi C, Rossetti S, van der Waarde J, Geurkink B, Elkelboom D, Lemaitre M, Tandoi V. Water science and technology : a journal of the International Association on Water Pollution Research. 2002. 12216694
Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment. Loy A, Lehner A, Lee N, Adamczyk J, Meier H, Ernst J, Schleifer KH, Wagner M. Applied and environmental microbiology. 2002. 12324358
Diversity and structure of the archaeal community in the leachate of a full-scale recirculating landfill as examined by direct 16S rRNA gene sequence retrieval. Huang LN, Zhou H, Chen YQ, Luo S, Lan CY, Qu LH. FEMS microbiology letters. 2002. 12351237
Glycogen-accumulating organisms in laboratory-scale and full-scale wastewater treatment processes. Crocetti GR, Banfield JF, Keller J, Bond PL, Blackall LL. Microbiology (Reading, England). 2002. 12427927
Analysis of 16S libraries of mouse gastrointestinal microflora reveals a large new group of mouse intestinal bacteria. Salzman NH, de Jong H, Paterson Y, Harmsen HJ, Welling GW, Bos NA. Microbiology (Reading, England). 2002. 12427955
The genus Caedibacter comprises endosymbionts of Paramecium spp. related to the Rickettsiales (Alphaproteobacteria) and to Francisella tularensis (Gammaproteobacteria). Beier CL, Horn M, Michel R, Schweikert M, Görtz HD, Wagner M. Applied and environmental microbiology. 2002. 12450827
Label-free detection of 16S ribosomal RNA hybridization on reusable DNA arrays using surface plasmon resonance imaging. Nelson BP, Liles MR, Frederick KB, Corn RM, Goodman RM. Environmental microbiology. 2002. 12460281
Diversity and distribution of a deeply branched novel proteobacterial group found in anaerobic-aerobic activated sludge processes. Kong Y, Ong SL, Ng WJ, Liu WT. Environmental microbiology. 2002. 12460283
In situ identification by fluorescently labeled oligonucleotide probes of morphologically similar, closely related ciliate species. Petroni G, Rosati G, Vannini C, Modeo L, Dini F, Verni F. Microbial ecology. 2003. 12491024
Phylogenetic position and in situ identification of ectosymbiotic spirochetes on protists in the termite gut. Noda S, Ohkuma M, Yamada A, Hongoh Y, Kudo T. Applied and environmental microbiology. 2003. 12514050
Real-time PCR quantification of nitrifying bacteria in a municipal wastewater treatment plant. Harms G, Layton AC, Dionisi HM, Gregory IR, Garrett VM, Hawkins SA, Robinson KG, Sayler GS. Environmental science & technology. 2003. 12564907
Improvement of ciliate identification and quantification: a new protocol for fluorescence in situ hybridization (FISH) in combination with silver stain techniques. Fried J, Ludwig W, Psenner R, Schleifer KH. Systematic and applied microbiology. 2002. 12583717
Microbial community and physicochemical analysis of an industrial waste gas biofilter and design of 16S rRNA-targeting oligonucleotide probes. Friedrich U, Van Langenhove H, Altendorf K, Lipski A. Environmental microbiology. 2003. 12588298
Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes. Peplies J, Glöckner FO, Amann R. Applied and environmental microbiology. 2003. 12620822
Nucleic acid-based, cultivation-independent detection of Listeria spp and genotypes of L monocytogenes. Schmid M, Walcher M, Bubert A, Wagner M, Wagner M, Schleifer KH. FEMS immunology and medical microbiology. 2003. 12648840
In situ identification of symbiotic dinoflagellates, the genus Symbiodinium with fluorescence-labeled rRNA-targeted oligonucleotide probes. Yokouchi H, Takeyama H, Miyashita H, Maruyama T, Matsunaga T. Journal of microbiological methods. 2003. 12689710
Specific detection of Pseudomonas spp. in milk by fluorescence in situ hybridization using ribosomal RNA directed probes. Gunasekera TS, Dorsch MR, Slade MB, Veal DA. Journal of applied microbiology. 2003. 12694460
Fluorescence in situ hybridization (FISH) for direct visualization of bacteria in periapical lesions of asymptomatic root-filled teeth. Sunde PT, Olsen I, Göbel UB, Theegarten D, Winter S, Debelian GJ, Tronstad L, Moter A. Microbiology (Reading, England). 2003. 12724371
Limitations of the widely used GAM42a and BET42a probes targeting bacteria in the Gammaproteobacteria radiation. Yeates C, Saunders AM, Crocetti GR, Blackall LL. Microbiology (Reading, England). 2003. 12724385
Optimization of single-base-pair mismatch discrimination in oligonucleotide microarrays. Urakawa H, El Fantroussi S, Smidt H, Smoot JC, Tribou EH, Kelly JJ, Noble PA, Stahl DA. Applied and environmental microbiology. 2003. 12732557