List of references at probeBase

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Reference title Pubmed-ID
Quantitative use of fluorescent in situ hybridization to examine relationships between mycolic acid-containing actinomycetes and foaming in activated sludge plants. Davenport RJ, Curtis TP, Goodfellow M, Stainsby FM, Bingley M. Applied and environmental microbiology. 2000. 10698786
Quantification of Hyphomicrobium populations in activated sludge from an industrial wastewater treatment system as determined by 16S rRNA analysis. Layton AC, Karanth PN, Lajoie CA, Meyers AJ, Gregory IR, Stapleton RD, Taylor DE, Sayler GS. Applied and environmental microbiology. 2000. 10698787
Identification of polyphosphate-accumulating organisms and design of 16S rRNA-directed probes for their detection and quantitation. Crocetti GR, Hugenholtz P, Bond PL, Schuler A, Keller J, Jenkins D, Blackall LL. Applied and environmental microbiology. 2000. 10698788
Design and uses of Bdellovibrio 16S rRNA-targeted oligonucleotides. Jurkevitch E, Ramati B. FEMS microbiology letters. 2000. 10713432
Rapid and specific detection of Helicobacter pylori macrolide resistance in gastric tissue by fluorescent in situ hybridisation. Trebesius K, Panthel K, Strobel S, Vogt K, Faller G, Kirchner T, Kist M, Heesemann J, Haas R. Gut. 2000. 10764702
Quantification of bacterial groups within human fecal flora by oligonucleotide probe hybridization. Sghir A, Gramet G, Suau A, Rochet V, Pochart P, Dore J. Applied and environmental microbiology. 2000. 10788414
A fluorescently-labelled r-RNA targeted oligonucleotide probe for the in situ detection of G-bacteria of the genus Amaricoccus in activated sludge. Maszenan A, Seviour RJ, Patel BK, Wanner J. Journal of applied microbiology. 2000. 10792543
Neochlamydia hartmannellae gen. nov., sp. nov. (Parachlamydiaceae), an endoparasite of the amoeba Hartmannella vermiformis. Horn M, Wagner M, Müller KD, Schmid EN, Fritsche TR, Schleifer KH, Michel R. Microbiology (Reading, England). 2000. 10832651
Culturability and In situ abundance of pelagic bacteria from the North Sea. Eilers H, Pernthaler J, Glöckner FO, Amann R. Applied and environmental microbiology. 2000. 10877804
Development and application of small-subunit rRNA probes for assessment of selected Thiobacillus species and members of the genus Acidiphilium. Peccia J, Marchand EA, Silverstein J, Hernandez M. Applied and environmental microbiology. 2000. 10877807
Detection of intracellular bacteria in the buds of Scotch pine (Pinus sylvestris L.) by in situ hybridization. Pirttilä AM, Laukkanen H, Pospiech H, Myllylä R, Hohtola A. Applied and environmental microbiology. 2000. 10877808
Fluorescent whole-cell hybridization with 16S rRNA-targeted oligonucleotide probes to identify Brucella spp. by flow cytometry. Fernández-Lago L, Vallejo FJ, Trujillano I, Vizcaíno N. Journal of clinical microbiology. 2000. 10878084
Development of oligonucleotide probes and PCR primers for detecting phylogenetic subgroups of sulfate-reducing bacteria. Daly K, Sharp RJ, McCarthy AJ. Microbiology (Reading, England). 2000. 10878133
16S rRNA-targeted oligonucleotide probes for the in situ detection of members of the phylum Cytophaga-Flavobacterium-Bacteroides. Weller R, Glöckner FO, Amann R. Systematic and applied microbiology. 2000. 10879984
Culture independent and rapid identification of bacterial pathogens in necrotising fasciitis and streptococcal toxic shock syndrome by fluorescence in situ hybridisation. Trebesius K, Leitritz L, Adler K, Schubert S, Autenrieth IB, Heesemann J. Medical microbiology and immunology. 2000. 10917153
Community structure, cellular rRNA content, and activity of sulfate-reducing bacteria in marine arctic sediments. Ravenschlag K, Sahm K, Knoblauch C, Jørgensen BB, Amann R. Applied and environmental microbiology. 2000. 10919825
Cultivation and in situ detection of a thermophilic bacterium capable of oxidizing propionate in syntrophic association with hydrogenotrophic methanogens in a thermophilic methanogenic granular sludge. Imachi H, Sekiguchi Y, Kamagata Y, Ohashi A, Harada H. Applied and environmental microbiology. 2000. 10919827
Identification of lactobacillus delbrueckii and subspecies by hybridization probes and PCR. Lick S, Brockmann E, Heller KJ. Systematic and applied microbiology. 2000. 10930078
Rapid identification of Enterobacteriaceae using a novel 23S rRNA-targeted oligonucleotide probe. Bohnert J, Hübner B, Botzenhart K. International journal of hygiene and environmental health. 2000. 10956593
Application of sequence-specific labeled 16S rRNA gene oligonucleotide probes for genetic profiling of cyanobacterial abundance and diversity by array hybridization. Rudi K, Skulberg OM, Skulberg R, Jakobsen KS. Applied and environmental microbiology. 2000. 10966421
Characterization of the microbial community of lotic organic aggregates ('river snow') in the Elbe River of Germany by cultivation and molecular methods. Böckelmanna U, Manza W, Neub TR, Szewzyka U. FEMS microbiology ecology. 2000. 10967215
Development of 16S rRNA-based probes for the Coriobacterium group and the Atopobium cluster and their application for enumeration of Coriobacteriaceae in human feces from volunteers of different age groups. Harmsen HJ, Wildeboer-Veloo AC, Grijpstra J, Knol J, Degener JE, Welling GW. Applied and environmental microbiology. 2000. 11010909
Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization(1). Jurgens G, Glöckner F, Amann R, Saano A, Montonen L, Likolammi M, Münster U. FEMS microbiology ecology. 2000. 11053735
Detection of Desulfotomaculum in an Italian rice paddy soil by 16S ribosomal nucleic acid analyses. Stubner S, Meuser K. FEMS microbiology ecology. 2000. 11053738
Phylogenetic analysis of and oligonucleotide probe development for eikelboom type 021N filamentous bacteria isolated from bulking activated sludge. Kanagawa T, Kamagata Y, Aruga S, Kohno T, Horn M, Wagner M. Applied and environmental microbiology. 2000. 11055962