List of references at probeBase

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Reference title Pubmed-ID
Detection and in situ identification of representatives of a widely distributed new bacterial phylum. Ludwig W, Bauer SH, Bauer M, Held I, Kirchhof G, Schulze R, Huber I, Spring S, Hartmann A, Schleifer KH. FEMS microbiology letters. 1997. 9252585
Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA. Ovreås L, Forney L, Daae FL, Torsvik V. Applied and environmental microbiology. 1997. 9292986
Detection and identification of Candida species in experimentally infected tissue and human blood by rRNA-specific fluorescent in situ hybridization. Lischewski A, Kretschmar M, Hof H, Amann R, Hacker J, Morschhäuser J. Journal of clinical microbiology. 1997. 9350764
Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Liu WT, Marsh TL, Cheng H, Forney LJ. Applied and environmental microbiology. 1997. 9361437
In situ identification of nocardioform actinomycetes in activated sludge using fluorescent rRNA-targeted oligonucleotide probes. Schuppler M, Wagner M, Schön G, Göbel UB. Microbiology (Reading, England). 1998. 9467916
In situ detection of a virulence factor mRNA and 16S rRNA in Listeria monocytogenes. Wagner M, Schmid M, Juretschko S, Trebesius KH, Bubert A, Goebel W, Schleifer KH. FEMS microbiology letters. 1998. 9495027
Bacterial community dynamics during start-up of a trickle-bed bioreactor degrading aromatic compounds. Stoffels M, Amann R, Ludwig W, Hekmat D, Schleifer KH. Applied and environmental microbiology. 1998. 9501433
Phylogeny and identification in situ of Nevskia ramosa. Glöckner FO, Babenzien HD, Amann R. Applied and environmental microbiology. 1998. 9572969
Quantification of Gordona amarae strains in foaming activated sludge and anaerobic digester systems with oligonucleotide hybridization probes. de los Reyes MF, de los Reyes FL, Hernandez M, Raskin L. Applied and environmental microbiology. 1998. 9647822
Analysis of beta-subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing Stephen JR, Kowalchuk GA, Bruns MAV, McCaig AE, Phillips CJ, Embley TM, Prosser JI. Applied and environmental microbiology. 1998. 9687457
Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations. Juretschko S, Timmermann G, Schmid M, Schleifer KH, Pommerening-Röser A, Koops HP, Wagner M. Applied and environmental microbiology. 1998. 9687471
Design and evaluation of a Lactobacillus group-specific ribosomal RNA-targeted hybridization probe and its application to the study of intestinal microecology in pigs. Sghir A, Antonopoulos D, Mackie RI. Systematic and applied microbiology. 1998. 9704114
Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes. Franks AH, Harmsen HJ, Raangs GC, Jansen GJ, Schut F, Welling GW. Applied and environmental microbiology. 1998. 9726880
Identification and activities in situ of Nitrosospira and Nitrospira spp. as dominant populations in a nitrifying fluidized bed reactor. Schramm A, De Beer D, Wagner M, Amann R. Applied and environmental microbiology. 1998. 9726900
Design and evaluation of a 16S rRNA-targeted oligonucleotide probe for specific detection and quantitation of human faecal Bacteroides populations. Doré J, Sghir A, Hannequart-Gramet G, Corthier G, Pochart P. Systematic and applied microbiology. 1998. 9741111
Specific detection of the genus Serpulina, S. hyodysenteriae and S. pilosicoliin porcine intestines by fluorescent rRNA in situ hybridization. Boye M, Jensen TK, Møller K, Leser TD, Jorsal SE. Molecular and cellular probes. 1998. 9778458
Fluorescence in situ hybridization shows spatial distribution of as yet uncultured treponemes in biopsies from digital dermatitis lesions. Moter A, Leist G, Rudolph R, Schrank K, Choi BK, Wagner M, Göbel UB. Microbiology (Reading, England). 1998. 9782493
Detection of Ralstonia solanacearum, which causes brown rot of potato, by fluorescent in situ hybridization with 23S rRNA-targeted probes. Wullings BA, Van Beuningen AR, Janse JD, Akkermans AD. Applied and environmental microbiology. 1998. 9797321
In situ detection of an uncultured predominant bacillus in Dutch grassland soils. Felske A, Akkermans AD, De Vos WM. Applied and environmental microbiology. 1998. 9797326
In situ detection of novel bacterial endosymbionts of Acanthamoeba spp. phylogenetically related to members of the order Rickettsiales. Fritsche TR, Horn M, Seyedirashti S, Gautom RK, Schleifer KH, Wagner M. Applied and environmental microbiology. 1999. 9872781
Monitoring a widespread bacterial group: in situ detection of planctomycetes with 16S rRNA-targeted probes. Neef A, Amann R, Schlesner H, Schleifer KH. Microbiology (Reading, England). 1998. 9884217
Phylogenetic diversity of symbiotic methanogens living in the hindgut of the lower termite Reticulitermes speratus analyzed by PCR and in situ hybridization. Shinzato N, Matsumoto T, Yamaoka I, Oshima T, Yamagishi A. Applied and environmental microbiology. 1999. 9925625
Identification of Culturable Oligotrophic Bacteria within Naturally Occurring Bacterioplankton Communities of the Ligurian Sea by 16S rRNA Sequencing and Probing. Giuliano L, De Domenico M , De Domenico E , Höfle MG, Yakimov MM. Microbial ecology. 1999. 9929396
Effect of phenylurea herbicides on soil microbial communities estimated by analysis of 16S rRNA gene fingerprints and community-level physiological profiles. el Fantroussi S, Verschuere L, Verstraete W, Top EM. Applied and environmental microbiology. 1999. 10049851
Identification of a novel group of bacteria in sludge from a deteriorated biological phosphorus removal reactor. Nielsen AT, Liu WT, Filipe C, Grady L, Molin S, Stahl DA. Applied and environmental microbiology. 1999. 10049891