List of references at probeBase

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Reference title Pubmed-ID
Design and application of rRNA-targeted oligonucleotide probes for the dissimilatory iron- and manganese-reducing bacterium Shewanella putrefaciens. DiChristina TJ, DeLong EF. Applied and environmental microbiology. 1993. 7506899
Rapid detection and identification of Vibrio anguillarum by using a specific oligonucleotide probe complementary to 16S rRNA. Martínez-Picado J, Blanch AR, Jofre J. Applied and environmental microbiology. 1994. 7510943
Development of an rRNA-targeted oligonucleotide probe specific for the genus Acinetobacter and its application for in situ monitoring in activated sludge. Wagner M, Erhart R, Manz W, Amann R, Lemmer H, Wedi D, Schleifer KH. Applied and environmental microbiology. 1994. 7512807
Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens. Raskin L, Stromley JM, Rittmann BE, Stahl DA. Applied and environmental microbiology. 1994. 7517128
Identifying members of the domain Archaea with rRNA-targeted oligonucleotide probes. Burggraf S, Mayer T, Amann R, Schadhauser S, Woese CR, Stetter KO. Applied and environmental microbiology. 1994. 7524440
The use of 16S rRNA-targeted oligonucleotide probes to study competition between ruminal fibrolytic bacteria: development of probes for Ruminococcus species and evidence for bacteriocin production. Odenyo AA, Mackie RI, Stahl DA, White BA. Applied and environmental microbiology. 1994. 7527201
In situ identification of Legionellaceae using 16S rRNA-targeted oligonucleotide probes and confocal laser scanning microscopy. Manz W, Amann R, Szewzyk R, Szewzyk U, Stenström TA, Hutzler P, Schleifer KH. Microbiology (Reading, England). 1995. 7534589
Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Amann RI, Ludwig W, Schleifer KH. Microbiological reviews. 1995. 7535888
Taxon-specific probes for the cellulolytic genus Fibrobacter reveal abundant and novel equine-associated populations. Lin C, Stahl DA. Applied and environmental microbiology. 1995. 7538274
Application of a strain-specific rRNA oligonucleotide probe targeting Pseudomonas fluorescens Ag1 in a mesocosm study of bacterial release into the environment. Boye M, Ahl T, Molin S. Applied and environmental microbiology. 1995. 7538276
Arcobacter-specific and Arcobacter butzleri-specific 16S rRNA-based DNA probes. Wesley IV, Schroeder-Tucker L, Baetz AL, Dewhirst FE, Paster BJ. Journal of clinical microbiology. 1995. 7545177
Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Muyzer G, Teske A, Wirsen CO, Jannasch HW. Archives of microbiology. 1995. 7545384
The abundance of Zoogloea ramigera in sewage treatment plants. Rosselló-Mora RA, Wagner M, Amann R, Schleifer KH. Applied and environmental microbiology. 1995. 7574608
Physiological state of Escherichia coli BJ4 growing in the large intestines of streptomycin-treated mice. Poulsen LK, Licht TR, Rang C, Krogfelt KA, Molin S. Journal of bacteriology. 1995. 7592332
Fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes to identify small phytoplankton by flow cytometry. Simon N, LeBot N, Marie D, Partensky F, Vaulot D. Applied and environmental microbiology. 1995. 7618862
Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms. Wallner G, Amann R, Beisker W. Cytometry. 1993. 7679962
Identification and classification of Lactobacillus acidophilus, L. gasseri and L. johnsonii strains by SDS-PAGE and rRNA-targeted oligonucleotide probe hybridization. Pot B, Hertel C, Ludwig W, Descheemaeker P, Kersters K, Schleifer KH. Journal of general microbiology. 1993. 7682599
Monitoring the enrichment and isolation of sulfate-reducing bacteria by using oligonucleotide hybridization probes designed from environmentally derived 16S rRNA sequences. Kane MD, Poulsen LK, Stahl DA. Applied and environmental microbiology. 1993. 7683181
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Muyzer G, de Waal EC, Uitterlinden AG. Applied and environmental microbiology. 1993. 7683183
Development of an oligonucleotide probe targeting 16S rRNA and its application for detection and quantitation of the ruminal bacterium Synergistes jonesii in a mixed-population chemostat. McSweeney CS, Mackie RI, Odenyo AA, Stahl DA. Applied and environmental microbiology. 1993. 7686002
Characterization of chemoautotrophic bacterial symbionts in a gutless marine worm Oligochaeta, Annelida) by phylogenetic 16S rRNA sequence analysis and in situ hybridization. Dubilier N, Giere O, Distel DL, Cavanaugh CM. Applied and environmental microbiology. 1995. 7793955
In situ probing of gram-positive bacteria with high DNA G + C content using 23S rRNA-targeted oligonucleotides. Roller C, Wagner M, Amann R, Ludwig W, Schleifer KH. Microbiology (Reading, England). 1994. 8000548
Identification of lactobacilli from sourdough and description of Lactobacillus pontis sp. nov. Vogel RF, Böcker G, Stolz P, Ehrmann M, Fanta D, Ludwig W, Pot B, Kersters K, Schleifer KH, Hammes WP. International journal of systematic bacteriology. 1994. 8186088
Occurrence of fragmented 16S rRNA in an obligate bacterial endosymbiont of Paramecium caudatum. Springer N, Ludwig W, Amann R, Schmidt HJ, Görtz HD, Schleifer KH. Proceedings of the National Academy of Sciences of the United States of America. 1993. 8234331
Application of rRNA-based probes for observing marine nanoplanktonic protists. Lim EL, Amaral LA, Caron DA, DeLong EF. Applied and environmental microbiology. 1993. 8517756