List of probes and primers

2970 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
21N — bacteria of relevance in wastewater treatment 16S Eikelboom type 021N strain II-26 ✔ ✘
LDI — bacteria of relevance in wastewater treatment 16S Leptothrix discophora ✔ ✘
SNA — bacteria of relevance in wastewater treatment 16S Sphaerotilus natans ✔ ✘
Cp1 — bacteria of medical or hygienical relevance 16S Clostridium perfringens ✘ ✘
Cp2 — bacteria of medical or hygienical relevance 16S Clostridium perfringens ✘ ✘
Cp3 — bacteria of medical or hygienical relevance 23S Clostridium perfringens ✘ ✘
ARBA (23-mer) — bacteria of medical or hygienical relevance 16S Arcobacter spp. ✘ ✘
ARBA (27-mer) — bacteria of medical or hygienical relevance 16S Arcobacter spp. ✘ ✘
ARBU (24-mer) — bacteria of medical or hygienical relevance 16S Arcobacter butzleri ✘ ✘
Hp16S-1 — bacteria of medical or hygienical relevance 16S Helicobacter pylori ✔ ✘
beta-572 — animal and human associated microbiota, intestinal microbiota 16S Candidatus Snodgrassella alvi or Beta (symbiotic Neisseriaceae phylotype in honey bee) ✔ ✘
OalgGAM445 — symbiotic microbes, S-oxidizing (sulfur-oxidizing) bacteria 16S Gammaproteobacterial, sulfur-oxidizing symbiont of Olavius algarvensis ✔ ✘
OalgDEL136 — symbiotic microbes, sulfate-reducing microbes 16S Deltaproteobacterial symbiont of Olavius algarvensis ✔ ✘
I. leu. (IleuSYM581) — symbiotic microbes 16S Gammaproteobacterial symbiont of Inanidrilus leukodermatus ✔ ✘
O. tan. (OtanSYM581) — symbiotic microbes 16S Gammaproteobacterial symbiont of Olavius tantalus ✔ ✘
PRYM02 — eukaryotes 18S Prymnesiophyceae ✔ ✘
PTB-6-7/1030 — - 16S PTB 6/7 cluster ✔ ✘
PTB-6-7/997 — - 16S PTB 6/7 cluster ✔ ✘
PTB-1/482 — - 16S PTB 1 cluster, Stappia stellulata, bacterium (AB010864) ✔ ✘
PTB-1/1014 — - 16S PTB 1 cluster, Stappia stellulata ✔ ✘
PTB-all/646 — - 16S Alphaproteobacterial clade (all PTB) ✔ ✘
PELA02 — eukaryotes 18S Pelagophyceae clade containing Aureococcus, Pelagomonas, Pulvinaria, CCMP 1395 ✔ ✘
PELA01 — eukaryotes 18S Pelagophyceae ✔ ✘
PAO462 — bacteria of relevance in wastewater treatment 16S Candidatus Accumulibacter phosphatis ✔ ✘
Rc988 — bacteria of relevance in wastewater treatment 16S Rhodocyclus spp., Candidatus Accumulibacter phosphatis, and related bacteria ✘ ✘