List of probes and primers

2970 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
STEBA635 S-*-Steba-0635-a-A-18 bacteria of relevance in wastewater treatment 16S Few members of the Sterolibacterium lineage (activated sludge clones S28 and A13) ✘ ✘
STEBA643 S-*-Steba-0643-a-A-18 bacteria of relevance in wastewater treatment 16S Few members of the Sterolibacterium lineage (activated sludge clones S40, H12, H23, and H20) ✘ ✘
STEBA214 S-*-Steba-0214-a-A-18 bacteria of relevance in wastewater treatment 16S Few members of the Sterolibacterium lineage (clones SBR1001, SBR2080, and GC24) ✘ ✘
QUACO135 S-*-Quaco-0135-a-A-18 bacteria of relevance in wastewater treatment 16S Quadricoccus australiensis, reactor clone PHOS-HE23 ✘ ✘
BTWO663 S-*-Btwo-0663-a-A-18 bacteria of relevance in wastewater treatment 16S most Rhodocyclales, but not the Rhodocyclales environmental cluster 1, Zoogloea spp., and Dechlorosoma-Azospira cluster ✘ ✘
ATD1459 S-*-ATD-1459-a-A-18 dinitrogen-fixing bacteria 16S most Azoarcus spp. and Thauera spp., Denitromonas sp. ✘ ✘
TH3 (AZTHA222,RHC222) S-*-RHC-0222-a-A-18 bacteria of relevance in wastewater treatment, dinitrogen-fixing bacteria 16S Some members of the Azoarcus-Thauera-Denitromonas, Zoogloea, and Azovibrio lineages ✘ ✘
AZIN1023 S-*-Az.in-1023-a-A-18 dinitrogen-fixing bacteria 16S Azoarcus sp. BH72, Azoarcus indigens ✘ ✘
TH14 (RHC175b) S-*-RHC-0175-b-A-18 bacteria of relevance in wastewater treatment, dinitrogen-fixing bacteria 16S Some Thauera, Azoarcus, Zoogloea, Sterolibacterium, and Azovibrio spp. ✘ ✘
AZA1252 S-*-Aza-1252-a-A-18 dinitrogen-fixing bacteria 16S Azoarcus evansii, Azoarcus toluvorans, Azoarcus tolulyticus, Azoarcus toluclasticus ✘ ✘
ATDe467 S-*-ATDe-0467-a-A-18 bacteria of relevance in wastewater treatment 16S Activated sludge clones A33, H25, H30, H35, S3, S10, and S23 of the Azoarcus-Thauera-Denitromonas lineage ✘ ✘
ZOGLO1416 S-G-Zoglo-1416-a-A-18 bacteria of relevance in wastewater treatment 16S Zoogloea spp. ✘ ✘
ACCBA651 S-*-Accba-0651-a-A-18 bacteria of relevance in wastewater treatment 16S most bacteria of the Candidatus Accumulibacter phosphatis cluster ✘ ✘
ACCBA455 S-*-Accba-0455-a-A-18 bacteria of relevance in wastewater treatment 16S Some members of the Candidatus Accumulibacter cluster ✘ ✘
ACCBA846 S-*-Accba-846-a-A-18 bacteria of relevance in wastewater treatment 16S Most members of the Candidatus Accumulibacter cluster ✘ ✘
STEBA448 S-*-Steba-0448-a-A-18 bacteria of relevance in wastewater treatment 16S Some members of the Sterolibacterium lineage (activated sludge clones S28, A13, S40, H12, H23, and H20) ✘ ✘
Cap1428 — symbiotic microbes 16S Candidatus capitivii acidiprotistae ✔ ✘
EUKb1193 — eukaryotes 18S nearly all Eukarya ✔ ✘
EUKb503 — eukaryotes 18S nearly all Eukarya ✔ ✘
EUKb310 — eukaryotes 18S nearly all Eukarya ✔ ✘
LKC59 S-*-eProt-0059-a-A-18 - 16S Epsilonproteobacterial group I from Lower Kane Cave ✔ ✘
LKC1006 S-*-eProt-1006-a-A-18 - 16S Epsilonproteobacterial group II from Lower Kane Cave ✔ ✘
HHY — bacteria of relevance in wastewater treatment 16S Haliscomenobacter hydrossis ✔ ✘
TNI — bacteria of relevance in wastewater treatment 16S Thiothrix nivea ✔ ✘
LMU — bacteria of relevance in wastewater treatment 16S Leucothrix mucor ✔ ✘