List of probes and primers

2970 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
THAU443 S-*-Thau-0443-a-A-18 - 16S Thauera selenatis, Thauera phenylacetica, and related Thauera spp.
THAU580 S-*-Thau-0580-a-A-18 - 16S Thauera selenatis, soil clone AX39
THAU455b S-*-Thau-0455-b-A-18 - 16S Thauera sp. PIV-1, TCB-transforming microbial consortium clone SJA-186
THAU468 S-*-Thau-0468-a-A-18 - 16S Thauera sp. PIV-1, TCB-transforming microbial consortium clone SJA-186
THATE461 S-*-Tha.te-0461-a-A-18 - 16S Thauera terpenica
DENAR176 S-*-Denar-0176-a-A-18 denitrifying (nitrate-reducing) bacteria 16S Denitromonas aromaticus
DENAR453 S-*-Denar-0453-a-A-18 denitrifying (nitrate-reducing) bacteria 16S Denitromonas aromaticus
DENAR845 S-*-Denar-0845-a-A-18 denitrifying (nitrate-reducing) bacteria 16S Denitromonas aromaticus
ZOGLO828 S-*-Zoglo-0828-a-A-18 bacteria of relevance in wastewater treatment 16S Zoogloea spp.
ZOGLO455 S-*-Zoglo-0455-a-A-18 bacteria of relevance in wastewater treatment 16S Some members of the Zoogloea lineage (activated sludge clones H13, H11, H22, H10, H40, H27, and S21), not Z. ramigera and Z. resiniphila
ZORAM211 S-*-Zo.ram-0211-a-A-18 bacteria of relevance in wastewater treatment 16S Zoogloea ramigera
ZORAM441 S-*-Zo.ram-0441-a-A-18 bacteria of relevance in wastewater treatment 16S Zoogloea ramigera
RHAC855 S-*-RhAc-0855-a-A-18 bacteria of relevance in wastewater treatment, phototrophic bacteria 16S Rhodocyclus spp., most members of the Candidatus Accumulibacter cluster
ACCBA443 S-*-Accba-0443-a-A-18 bacteria of relevance in wastewater treatment 16S Some members of the Candidatus Accumulibacter cluster
RHO828 S-G-Rho-0828-a-A-18 phototrophic bacteria 16S Rhodocyclus spp.
RHO842 S-G-Rho-0842-a-A- phototrophic bacteria 16S Rhodocyclus spp.
RHOTE1280 S-*-Rho.te-1280-a-A-18 phototrophic bacteria 16S Rhodocyclus tenuis DSM109, Rhodocyclus tenuis SW18
AZP737 S-G-Azp-0737-a-A-18 dinitrogen-fixing bacteria 16S Most Azospira spp.
AZP471 S-G-Azp-0471-a-A-18 dinitrogen-fixing bacteria 16S Most Azospira spp.
AZP456 S-G-Azp-0456-a-A-18 dinitrogen-fixing bacteria 16S Most Azospira spp.
DCMAG455 S-S-Dcm.ag-0455-a-A-18 - 16S Dechloromonas agitata
DEMFE455 S-*-Dem.Fe-0455-a-A-18 - 16S Ferribacterium limneticum, few Dechloromonas spp.
AZV211 S-G-Azv-0211-a-A-18 dinitrogen-fixing bacteria 16S Azovibrio spp.
AZVRE847 S-*-Azv.re-0847-a-A-18 dinitrogen-fixing bacteria 16S Azovibrio restrictus
STEBA468 S-*-Steba-0468-a-A-18 bacteria of relevance in wastewater treatment 16S Some members of the Sterolibacterium lineage (activated sludge clones S28, A13, S40, H12, H23, and H20)