List of probes and primers

2970 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
DSS225 — sulfate-reducing microbes 16S Desulfosarcina and many other Desulfobacteraceae ✔ ✘
DSS658 S-*-Dsb-0658-a-A-18 sulfate-reducing microbes 16S Desulfobacteraceae and other Bacteria ✔ ✘
DSV1154 — sulfate-reducing microbes 16S Desulfovibrio alcoholivorans, D. fructosivorans, D. burkinensis, rice field isolate F1-7b and R-SucA1 ✘ ✘
DSV1292 S-*-Dsv-1292-a-A-18 sulfate-reducing microbes 16S Some Desulfovibrio and Bilophila wadsworthia ✔ ✘
DSV214 — sulfate-reducing microbes 16S Most Desulfomicrobium ✔ ✘
DSV407 — sulfate-reducing microbes 16S Few Desulfovibrionaceae, Desulfohalobiaceae, and Desulfonatronumaceae ✔ ✘
Dsv683 S-*-Dsv-0683-a-A-22 sulfate-reducing microbes 16S Desulfovibrionaceae, metal reducers ✘ ✘
687(DSV687) S-F-Dsv-0687-a-A-16 sulfate-reducing microbes, iron- and manganese-reducing bacteria 16S Most Desulfovibrionales (excluding Lawsonia) and many Desulfuromonales ✔ ✘
DSV698 — sulfate-reducing microbes 16S Some Desulfovibrio, Bilophila wadsworthia, and Lawsonia intracellularis ✔ ✘
Dtm(a)229 S-*-Dtm(a)-0229-a-A-18 sulfate-reducing microbes 16S Desulfotomaculum cluster Ia ✘ ✘
Dtm(bcd)230 S-*-Dtm(bcd)-0230-a-A-18 sulfate-reducing microbes 16S Many Desulfotomaculum cluster I and other Firmicutes ✔ ✘
Dtm(be)152 S-*-Dtm(be)-0152-a-A-20 sulfate-reducing microbes 16S Desulfotomaculum cluster Ib and Ie ✘ ✘
Dtm(c)428 S-*-Dtm(c)-0428-a-A-19 sulfate-reducing microbes 16S Desulfotomaculum cluster Ic ✘ ✘
Dtm(cd)216 S-*-Dtm(cd)-0216-a-A-19 sulfate-reducing microbes 16S Desulfotomaculum cluster Ic and Id ✘ ✘
Dtm229 S-G-Dtm-0229-a-A-18 sulfate-reducing microbes 16S Desulfotomaculum cluster I and other Firmicutes ✔ ✘
Eampr18 — bacteria of medical or hygienical relevance 23S Enterococcus avium, E. malodoratus, E. pseudoavium, E. raffinosus ✘ ✘
Eamprs09 — bacteria of medical or hygienical relevance 23S Enterococcus avium, E. malodoratus, E. pseudoavium, E. raffinosus, E. sulfureus ✘ ✘
Eas09 — bacteria of medical or hygienical relevance 23S Enterococcus asini ✘ ✘
Eav58i — bacteria of medical or hygienical relevance 23S Enterococcus avium ✘ ✘
Eca18i — bacteria of medical or hygienical relevance 16S Enterococcus casseliflavus ✘ ✘
Ecafl09i — bacteria of medical or hygienical relevance 23S Enterococcus casseliflavus, E. flavescens ✘ ✘
ECC460 (ECC 461) — bacteria of medical or hygienical relevance 16S Enterococcus columbae, Enterococcus cecorum ✘ ✘
Ecc461 — bacteria of medical or hygienical relevance 16S Enterococcus columbae, E. cecorum ✘ ✘
Eacdfg57 — bacteria of medical or hygienical relevance 23S Enterococcus casseliflavus, E. flavescens, E. asini, E. dispar, E. gallinarum ✘ ✘
Ece09 — bacteria of medical or hygienical relevance 23S Enterococcus cecorum ✘ ✘