List of probes and primers

2970 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
Azo1251 — dinitrogen-fixing bacteria 16S Azoarcus tolulyticus strains Tol-4, Td-1, Td-15, Td-17, Td-19, Td-21, A. evansii KB740, Azoarcus sp. strain pF6 ✔ ✘
AZA483 S-*-Aza-0645-a-A-18 dinitrogen-fixing bacteria 16S Azoarcus cluster ✔ ✘
BAC303 S-*-Bacto-0303-a-A-17 higher taxonomic levels 16S most Bacteroidaceae and Prevotellaceae, some Porphyromonadaceae ✔ ✘
BACSUCC — - 16S Fibrobacter succinogenes (Bacteroides succinogenes) NR9 and DR7 ✘ ✘
Bcv13b — bacteria of medical or hygienical relevance 23S Burkholderia vietnamensis, B. cepacia ✔ ✘
BET42a L-C-bProt-1027-a-A-17 higher taxonomic levels 23S Betaproteobacteria ✔ ✘
Bif1278 S-G-Bif-1278-a-A-17 animal and human associated microbiota, intestinal microbiota 16S Bifidobacterium spp. ✘ ✘
LSPotu11021-1127 S-*-Lsp-1127-a-A-20 animal and human associated microbiota, intestinal microbiota 16S Lachnospiraceae OTU_11021 ✔ ✘
Bif164 S-G-Bif-0164-a-A-18 animal and human associated microbiota, intestinal microbiota 16S Bifidobacterium spp. ✘ ✘
Bif662 S-G-Bif-0662-a-A-18 animal and human associated microbiota, intestinal microbiota 16S Bifidobacterium spp. ✘ ✘
BONE23A — - 16S beta1-group of Betaproteobacteria ✔ ✘
BTWO23A — - 16S competitor for BONE23A ✔ ✘
CF319a — higher taxonomic levels 16S most Flavobacteria, some Bacteroidetes, some Sphingobacteria ✔ ✘
CF319b — higher taxonomic levels 16S some Flavobacteria and Sphingobacteria ✔ ✘
CFB1082 — higher taxonomic levels 16S most members of the class Bacteroidetes ✘ ✘
CFB286 — higher taxonomic levels 16S most members of the genus Tannerella and the genus Prevotella of the class Bacteriodetes ✔ ✘
CFB563 — higher taxonomic levels 16S most Flavobacteria ✔ ✘
CFB719 — higher taxonomic levels 16S most members of the class Bacteriodetes, some Flavobacteria and Sphingobacteria ✔ ✘
CFB972 — higher taxonomic levels 16S some Flavobacteria ✔ ✘
Chls-0523 S-O-Chls-0523-a-A-18 higher taxonomic levels, bacteria of medical or hygienical relevance 16S Chlamydiales ✔ ✘
CIV/V1342 — higher taxonomic levels 16S heterocystous strains of cyanobacteria (sections IV and V) ✘ ✘
cl81-644 — sulfate-reducing microbes 16S Few Desulfobacteraceae ✔ ✘
Clept1240 S-G-Clept-1240-a-A-18 animal and human associated microbiota, intestinal microbiota 16S Clostridium leptum ✘ ✘
CREN499 S-K-Cren-0499-a-A-18 - 16S most Crenarchaeota ✔ ✘
CYA361 — higher taxonomic levels 16S most Cyanobacteria ✘ ✘