List of probes and primers

2970 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
EUB338_V S-D-Bact-0338-a-A-18 - 16S Candidatus Cyrtobacter comes some Chloroflexi some Firmicutes some Proteobacteria ✘ ✘
LS_HOL189 L-P-Acido-0189-a-A-18 - 23S Acidobacteria ✔ ✘
SS_HOL1400 S-P-Acido-1400-a-A-17 - 16S Acidobacteria ✔ ✘
LS_ALP544 L-*-kan1–0544-a-A-18 - 23S LS_LKC21_kan1 ✔ ✘
LS_ALP761 L-*-Sub7–0761-a-A-18 - 23S Parts of Acidobacterial subgroup 7 (including LS_LKC21_kan1, DON29, DON30, DON31) ✔ ✘
SS_subd7_UB55–585 S-*-Sub7–0585-a-A-18 - 16S Clone SS_LKC22_UB55, subgroup 7 SS_LKC22_UA71, SS_LKC21_kan1 ✔ ✘
SS_subd7_UB55–632 S-*-Sub7–0632-a-A-18 - 16S Clone SS_LKC22_UB55, subgroup 7 SS_LKC22_UA71, SS_LKC21_kan1 ✔ ✘
LS_subd8_SGB1223 L-*-Sub8–1223-a-A-18 - 23S Acidobacterial subgroup 8 LS_LKC11_kan2, LS_LKC22_kan3, LS_LKC11_kan4, LS_LKC21_kan5 (LS_LKC11_kan6), clone ZC6, G. fermentans, H. foetida ✔ ✘
LS_subd8_SGB1420 L-*-Sub8-1420-a-A-18 - 23S Acidobacterial subgroup 8 LS_LKC11_kan2, LS_LKC22_kan3, LS_LKC11_kan4, LS_LKC21_kan5, LS_LKC11_kan6, clone ZC6, G. fermentans, H. foetida, ✔ ✘
LS_GFER2787 L-*-Gfer-2787-a-A-18 - 23S G. fermentans and relatives (no LKC clones) ✔ ✘
Bru-996 — - 16S Brucella spp. ✘ ✘
S-S-T.int-0442-a-A-18 — - 16S Thiomonas intermedia ✔ ✘
S-S-T.plum-450-a-A-18 — - 16S Thiobacillus plumbophilus ✔ ✘
S-S-H.neap-635-a-A-19 — - 16S Halothiobacillus neapolitanus ✔ ✘
RB454 — - 16S Pirellula sp. strain SH1 ✔ ✘
PIR1223 — - 16S Genus Pirellula ✔ ✘
ALF682 S-Sc-aProt-0682-a-A-18 - 16S Alphaproteobacteria from sludge anaerobic digesters ✘ ✘
YDC69 — - 16S uncultivated magnetotactic cocci (Candidatus Magnetococcus yuandaducum) ✔ ✘
L2CG353 — - 23S Leptospirillum ferriphilum 5-way CG ✔ ✘
L2UBA353 — - 23S Leptospirillum rubarum UBA ✔ ✘
BDE525 — - 16S Genus Bdellovibrio ✔ ✘
Aceto2 — - 16S Acetobacteraceae (excepted Acidiphilium, Acidocella, Acidisphaera, Paracraurococcus, Crauroccocus, Roseococcus) ✘ ✘
Aceto3A — - 16S Some Acetobacteraceae ✘ ✘
Aceto3B — - 16S Acetobacteraceae ✘ ✘
Ace2 — - 16S Acetobacter ✘ ✘