List of probes and primers

2970 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
EUB338_V S-D-Bact-0338-a-A-18 - 16S Candidatus Cyrtobacter comes some Chloroflexi some Firmicutes some Proteobacteria
LS_HOL189 L-P-Acido-0189-a-A-18 - 23S Acidobacteria
SS_HOL1400 S-P-Acido-1400-a-A-17 - 16S Acidobacteria
LS_ALP544 L-*-kan1–0544-a-A-18 - 23S LS_LKC21_kan1
LS_ALP761 L-*-Sub7–0761-a-A-18 - 23S Parts of Acidobacterial subgroup 7 (including LS_LKC21_kan1, DON29, DON30, DON31)
SS_subd7_UB55–585 S-*-Sub7–0585-a-A-18 - 16S Clone SS_LKC22_UB55, subgroup 7 SS_LKC22_UA71, SS_LKC21_kan1
SS_subd7_UB55–632 S-*-Sub7–0632-a-A-18 - 16S Clone SS_LKC22_UB55, subgroup 7 SS_LKC22_UA71, SS_LKC21_kan1
LS_subd8_SGB1223 L-*-Sub8–1223-a-A-18 - 23S Acidobacterial subgroup 8 LS_LKC11_kan2, LS_LKC22_kan3, LS_LKC11_kan4, LS_LKC21_kan5 (LS_LKC11_kan6), clone ZC6, G. fermentans, H. foetida
LS_subd8_SGB1420 L-*-Sub8-1420-a-A-18 - 23S Acidobacterial subgroup 8 LS_LKC11_kan2, LS_LKC22_kan3, LS_LKC11_kan4, LS_LKC21_kan5, LS_LKC11_kan6, clone ZC6, G. fermentans, H. foetida,
LS_GFER2787 L-*-Gfer-2787-a-A-18 - 23S G. fermentans and relatives (no LKC clones)
Bru-996 - 16S Brucella spp.
S-S-T.int-0442-a-A-18 - 16S Thiomonas intermedia
S-S-T.plum-450-a-A-18 - 16S Thiobacillus plumbophilus
S-S-H.neap-635-a-A-19 - 16S Halothiobacillus neapolitanus
RB454 - 16S Pirellula sp. strain SH1
PIR1223 - 16S Genus Pirellula
ALF682 S-Sc-aProt-0682-a-A-18 - 16S Alphaproteobacteria from sludge anaerobic digesters
YDC69 - 16S uncultivated magnetotactic cocci (Candidatus Magnetococcus yuandaducum)
L2CG353 - 23S Leptospirillum ferriphilum 5-way CG
L2UBA353 - 23S Leptospirillum rubarum UBA
BDE525 - 16S Genus Bdellovibrio
Aceto2 - 16S Acetobacteraceae (excepted Acidiphilium, Acidocella, Acidisphaera, Paracraurococcus, Crauroccocus, Roseococcus)
Aceto3A - 16S Some Acetobacteraceae
Aceto3B - 16S Acetobacteraceae
Ace2 - 16S Acetobacter