List of probes and primers

2970 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
1 — higher taxonomic levels 16S Universal ✘ ✘
2 — higher taxonomic levels 16S Universal ✘ ✘
5 — higher taxonomic levels 16S Bacteria ✘ ✘
Phasco741 — - 16S Phascolarctobacterium faecium, Acidaminococcus fermentans, Succiniclasticum ruminis ✔ ✘
Veil223 — bacteria of medical or hygienical relevance 16S Veillonella dispar, Veillonella parvula, Veillonella atypica ✔ ✘
Ehal1469 — - 16S Eubacterium hallii, Clostridium herbivorans, Clostridium polysaccharolyticum ✔ ✘
Lach571 — - 16S Lachnospira multipara, Eubacterium eligens, Lachnospira pectinoschiza ✔ ✘
Ecyl387 — - 16S Eubacterium cylindroides, Clostridium innocuum, Eubacterium biforme, Eubacterium tortuosum, Eubacterium dolichum, Streptococcus pleomorphus ✔ ✘
Rfla729 S-*-Rfla-0729-a-A-18 - 16S Ruminococcus albus, R. flavefaciens ✔ ✘
Rbro730 S-*-Rbro-0730-a-A-18 - 16S Clostridium sporosphaeroides, Ruminococcus bromii, Clostridium leptum ✔ ✘
RHC175a S-*-RHC-0175-a-A-18 bacteria of relevance in wastewater treatment 16S Most members of the Dechloromonas-Ferribacterium-Quadricoccus-Azonexus, the Azospira, and the Rhodocyclus-Propionivibrio-Accumulibacter lineages ✘ ✘
RHC439 S-*-RHC-0439-a-A-18 bacteria of relevance in wastewater treatment 16S Rhodocyclus spp., most member of the Candidatus Accumulibacter cluster, Azospira lineage ✔ ✘
RHW456 S-G-Rhw-0456-a-A-18 bacteria of relevance in wastewater treatment 16S Bio-P enrichment culture clone R1 ✔ ✘
RHW991 S-G-Rhw-0991-a-A-18 bacteria of relevance in wastewater treatment 16S Bio-P enrichment culture clone R1 ✔ ✘
RHX456 S-G-Rhx-0456-a-A-17 bacteria of relevance in wastewater treatment 16S Candidatus Accumulibacter phosphatis (clone R6) ✔ ✘
RHX991 S-G-Rhx-0991-a-A-18 bacteria of relevance in wastewater treatment 16S Candidatus Accumulibacter phosphatis (clone R6) ✔ ✘
AVI — bacteria of medical or hygienical relevance 16S Enterococcus avium ✘ ✘
ASI — bacteria of medical or hygienical relevance 16S Enterococcus asini ✘ ✘
CEC — bacteria of medical or hygienical relevance 16S Enterococcus cecorum ✘ ✘
COL — bacteria of medical or hygienical relevance 16S Enterococcus columbae ✘ ✘
CGF — bacteria of medical or hygienical relevance 16S Enterococcus casseliflavus, E. gallinarum, E. flavescens ✘ ✘
DUR — bacteria of medical or hygienical relevance 16S Enterococcus durans ✘ ✘
DIS — bacteria of medical or hygienical relevance 16S Enterococcus dispar ✘ ✘
FMDUR — bacteria of medical or hygienical relevance 16S Enterococcus faecium, E. durans ✘ ✘
HIR — bacteria of medical or hygienical relevance 16S Enterococcus hirae ✘ ✘