Details of the microarray

Array name Description Technique Reference
Burkholderia-Phylochip Low-density oligonucleotide microarray (microchip) for detection and differentiation of members of the genus Burkholderia. The microarray contains 132 16S rRNA-targeted oligonucleotide probes (mostly 18-mer) of parallel and hierarchical specificity designed according to the multiple probe concept. Oligonucleotide probes with a 20 dTTP spacer-element and amino-modification at the 5'-terminal end were spotted to epoxysilane coated slides. 16S rRNA gene-based phylogenetic microarray for simultaneous identification of members of the genus Burkholderia. Schönmann S, Loy A, Wimmersberger C, Sobek J, Aquino C, Vandamme P, Frey B, Rehrauer H, Eberl L. Environmental microbiology. 2009. Pubmed: 19396938

The following probes are part of the array:

EUB338 (Bact338) (bacterial) (pB-159), EUB338 II (SBACT P 338) (pB-160), EUB338 III (SBACT V 338) (pB-161), NONEUB (NON338) (non-Bact338) (pB-243), Burkho (pB-347), Pae997 (pB-371), PSM G (pB-380), UNIV1389a (pB-428), Beta1 (pB-1372), Beta2 (pB-1373), Beta3 (pB-1374), Beta4 (pB-1375), Burkho4A (pB-1376), Burkho4B (pB-1377), Burkho4C (pB-1378), Burkho4D (pB-1379), Mallei 2 (pB-1380), Mallei 3 (pB-1381), Pic1 (pB-1382), EUB342 (pB-1383), BKH1 (pB-1384), BKH2 (pB-1385), BKH3 (pB-1386), BKH4 (pB-1387), BKH5 (pB-1388), BKH6 (pB-1389), BKH7 (pB-1390), BKH8 (pB-1391), BKH9 (pB-1392), BKH10 (pB-1393), BKH11 (pB-1394), BKH12 (pB-1395), BKH13 (pB-1396), BKH14 (pB-1397), BKH15 (pB-1398), BKH16 (pB-1399), BKH17 (pB-1400), BKH18 (pB-1401), BKH19 (pB-1402), BKH20 (pB-1403), BKH21 (pB-1404), BKH22 (pB-1405), BKH23 (pB-1406), BKH24 (pB-1407), BKH25 (pB-1408), BKH26 (pB-1409), BKH27 (pB-1410), BKH28 (pB-1411), BKH29 (pB-1412), BKH30 (pB-1413), BKH31 (pB-1414), BKH32 (pB-1415), BKH33 (pB-1416), BKH34 (pB-1417), BKH35 (pB-1418), BKH36 (pB-1419), BKH37 (pB-1420), BKH38 (pB-1421), BKH39 (pB-1422), BKH40 (pB-1423), BKH41 (pB-1424), BKH42 (pB-1425), BKH43 (pB-1426), BKH45 (pB-1428), BKH46 (pB-1429), BKH47 (pB-1430), BKH48 (pB-1431), BKH49 (pB-1432), BKH50 (pB-1433), BKH51 (pB-1434), BKH52 (pB-1435), BKH53 (pB-1436), BKH54 (pB-1437), BKH55 (pB-1438), BKH56 (pB-1439), BKH57 (pB-1440), BKH58 (pB-1441), BKH59 (pB-1442), BKH60 (pB-1443), BKH61 (pB-1444), BKH62 (pB-1445), BKH63 (pB-1446), BKH64 (pB-1447), BKH65 (pB-1448), BKH66 (pB-1449), BKH67 (pB-1450), BKH68 (pB-1451), BKH69 (pB-1452), BKH70 (pB-1453), BKH71 (pB-1454), BKH72 (pB-1455), BKH73 (pB-1456), BKH74 (pB-1457), BKH75 (pB-1458), BKH76 (pB-1459), BKH77 (pB-1460), BKH78 (pB-1461), BKH79 (pB-1462), BKH80 (pB-1463), BKH81 (pB-1464), BKH82 (pB-1465), BKH83 (pB-1466), BKH84 (pB-1467), BKH85 (pB-1468), BKH86 (pB-1469), BKH87 (pB-1470), BKH88 (pB-1471), BKH89 (pB-1472), BKH90 (pB-1473), BKH91 (pB-1474), BKH92 (pB-1475), BKH93 (pB-1476), BKH94 (pB-1477), BKH95 (pB-1478), BKH96 (pB-1479), BKH97 (pB-1480), BKH98 (pB-1481), BKH99 (pB-1482), BKH100 (pB-1483), BKH101 (pB-1484), BKH102 (pB-1485), BKH103 (pB-1486), BKH104 (pB-1487), BKH105 (pB-1488), BKH106 (pB-1489), BKH107 (pB-1490), BKH108 (pB-1491), BKH109 (pB-1492), BKH110 (pB-1493), BKH111 (pB-1494), BKH112 (pB-1495), BKH113 (pB-1496), BKH114 (pB-1497), BKH115 (pB-1498), BKH116 (pB-1499), BKH117 (pB-1500), BKH118 (pB-1501), BKH119 (pB-1502), BKH120 (pB-1503), BKH121 (pB-1504), BKH122 (pB-1505), BKH123 (pB-1506), BKH124 (pB-1507), BKH125 (pB-1508), BKH126 (pB-1509), BKH127 (pB-1510), BKH128 (pB-1511), BKH129 (pB-1512), BKH130 (pB-1513), BKH131 (pB-1514), BKH132 (pB-1515)