List of probes and primers

2970 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
PIN — - 16S Bifidobacterium infantis ✘ ✘
PLO — - 16S Bifidobacterium longum ✘ ✘
SPN3 — iron- and manganese-reducing bacteria 16S Shewanella putrefaciens ✘ ✘
V3VV — - 16S Vibrio vulnificus ✘ ✘
UNIV1389a S-D-Univ-1389-a-A-18 higher taxonomic levels 16S Bacteria, not Epsilonproteobacteria ✘ ✘
UNIV1389b S-D-Univ-1389-b-A-18 higher taxonomic levels, eukaryotes 18S Eucarya ✘ ✘
UNIV1389c S-D-Univ-1389-c-A-18 higher taxonomic levels 16S Archaea ✘ ✘
ARCH917 S-D-Arch-0917-a-A-18 higher taxonomic levels 16S Archaea ✘ ✘
DELTA495a S-C-dProt-0495-a-A-18 higher taxonomic levels, sulfate-reducing microbes 16S Most Deltaproteobacteria and most Gemmatimonadetes ✔ ✘
DELTA495b S-*-dProt-0495-b-A-18 higher taxonomic levels, sulfate-reducing microbes 16S some Deltaproteobacteria ✔ ✘
DELTA495c S-*-dProt-0495-c-A-18 higher taxonomic levels, sulfate-reducing microbes 16S some Deltaproteobacteria ✔ ✘
NTSPA714 S-*-Ntspa-714-a-A-18 higher taxonomic levels, nitrite-oxidizing bacteria 16S Phylum Nitrospira, not Thermodesulfovibrio islandicus ✘ ✘
DSB706 S-*-Dsb-0706-a-A-18 sulfate-reducing microbes 16S Most Desulfobulbaceae and Thermodesulforhabdus ✔ ✘
DSB230 S-*-Dsb-0230-a-A-18 sulfate-reducing microbes 16S Desulfotalea-Desulforhopalus-Desulfocapsa-Desulfofustis lineage ✘ ✘
DSTAL131 S-G-Dstal-0131-a-A-18 sulfate-reducing microbes 16S Desulfotalea spp. ✘ ✘
DSTAL213 S-G-Dstal-0213-a-A-18 sulfate-reducing microbes 16S Desulfotalea spp. ✘ ✘
DSTAL645 S-G-Dstal-0645-a-A-18 sulfate-reducing microbes 16S Desulfotalea spp. ✘ ✘
DSTAL732 S-G-Dstal-0732-a-A-18 sulfate-reducing microbes 16S Desulfotalea spp. ✘ ✘
DSTAL835 S-G-Dstal-0835-a-A-18 sulfate-reducing microbes 16S Desulfotalea spp. ✘ ✘
DSRHP185 S-*-Dsrhp-0185-a-A-18 sulfate-reducing microbes 16S Desulforhopalus spp. ✘ ✘
DSBB228 S-G-Dsbb-0228-a-A-18 sulfate-reducing microbes 16S Desulfobulbus spp. ✘ ✘
DSBB660 S-G-Dsbb-0660-a-A-18 sulfate-reducing microbes 16S Desulfobulbus spp. ✘ ✘
DSB986 S-*-Dsb-0986-a-A-18 sulfate-reducing microbes 16S Desulfobacter spp., Desulfobacula sp., Desulfobacterium sp., Desulfospira sp., Desulfotignum sp. ✘ ✘
DSB1030 S-*-Dsb-1030-a-A-18 sulfate-reducing microbes 16S Desulfobacter spp., Desulfobacula sp., Desulfobacterium sp., Desulfospira sp., Desulfotignum sp. ✘ ✘
DSB1240 S-*-Dsb-1240-a-A-18 sulfate-reducing microbes 16S Desulfobacter spp., Desulfotignum sp. ✘ ✘