List of probes and primers

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Entered target organism: Rhodocyclaceae.

21 probes found.

Hit type Probe name Full name (Alm et al.) Target rRNA Specificity FISH Primer
Exact Rhoc-1425 S-*-Rhoc-1425-a-A-18 16S some unclassified Rhodocyclaceae ✔ ✘
Exact Rhoc-0998 S-*-Rhoc-0998-a-A-18 16S some Rhodocyclaceae ✔ ✘
Exact RHC630 S-*-RHC-0630-a-A-18 16S Most Thauera, Zoogloea, and Rhodocyclus spp. ✘ ✘
Exact TH14 (RHC175b) S-*-RHC-0175-b-A-18 16S Some Thauera, Azoarcus, Zoogloea, Sterolibacterium, and Azovibrio spp. ✘ ✘
Exact ATD1459 S-*-ATD-1459-a-A-18 16S most Azoarcus spp. and Thauera spp., Denitromonas sp. ✘ ✘
Exact RHC175a S-*-RHC-0175-a-A-18 16S Most members of the Dechloromonas-Ferribacterium-Quadricoccus-Azonexus, the Azospira, and the Rhodocyclus-Propionivibrio-Accumulibacter lineages ✘ ✘
Exact TH3 (AZTHA222,RHC222) S-*-RHC-0222-a-A-18 16S Some members of the Azoarcus-Thauera-Denitromonas, Zoogloea, and Azovibrio lineages ✘ ✘
Exact RHC143 S-*-RHC-0143-a-A-18 16S Most members of the Dechloromonas-Ferribacterium-Quadricoccus-Azonexus, the Azospira, and the Rhodocyclus-Propionivibrio-Accumulibacter lineages, Zoogloea spp., and few members of the Azoarcus-Thauera-Denitromonas lineage ✘ ✘
Exact OTU2-132 (ATDe132) S-*-ATDe-0132-a-A-18 16S Activated sludge clones A33, H25, H30, H35, S3, S10, and S23 of the Azoarcus-Thauera-Denitromonas lineage ✔ ✘
Exact ATDe442 S-*-ATDe-0442-a-A-18 16S Activated sludge clones A33, H25, H30, H35, S3, S10, and S23 of the Azoarcus-Thauera-Denitromonas lineage ✘ ✘
Exact ATDe830 S-*-ATDe-0830-a-A-18 16S Activated sludge clones A33, H25, H30, H35, S3, S10, and S23 of the Azoarcus-Thauera-Denitromonas lineage ✘ ✘
Exact ATDe467 S-*-ATDe-0467-a-A-18 16S Activated sludge clones A33, H25, H30, H35, S3, S10, and S23 of the Azoarcus-Thauera-Denitromonas lineage ✘ ✘
Exact DAF1030 S-*-D.A.F-1030-a-A-18 16S Some bacteria of the Dechloromonas-Ferribacterium-Quadricoccus-Azonexus lineage ✘ ✘
Exact DEMFE455 S-*-Dem.Fe-0455-a-A-18 16S Ferribacterium limneticum, few Dechloromonas spp. ✘ ✘
Exact DEN220a — 16S Acetate-denitrifying cluster and some members of the Rhodocyclaceae family ✔ ✘
Exact DEN441 — 16S Acetate-denitrifying cluster and some members of the Rhodocyclaceae family ✔ ✘
Exact AT1458 — 16S Azoarcus-Thauera cluster ✔ ✘
Spec Rhoc-0998 S-*-Rhoc-0998-a-A-18 16S some Rhodocyclaceae ✔ ✘
Spec Rhoc-1425 S-*-Rhoc-1425-a-A-18 16S some unclassified Rhodocyclaceae ✔ ✘
Spec DEN220a — 16S Acetate-denitrifying cluster and some members of the Rhodocyclaceae family ✔ ✘
Spec DEN441 — 16S Acetate-denitrifying cluster and some members of the Rhodocyclaceae family ✔ ✘