List of probes and primers

2970 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
DFMI227b S-*-DfmI-0227-b-A-18 sulfate-reducing microbes 16S Desulfotomaculum aeronauticum, Dfm. nigrificans, Dfm. reducens, Dfm. ruminis, Dfm. sapomandens, Dfm. halophilum ✘ ✘
KO 214 S-*-Yenta-0443-a-A-19 - 16S Yersinia enterocolitica, Y. kristensenii ✘ ✘
Strepto1 — - 16S Streptococcus ✘ ✘
Azo5 — - 16S Azospirillum (excepted A. irakense and A. amazonense), some Roseomonas spp., some Rhodospirillum spp., some Rhodocista spp., some Skermanella spp. ✘ ✘
Corallc5 — - 16S Some Corallococcus ✘ ✘
Chlorb I 440 S-*-Chlorb I-0440-a-A-20 - 16S phylotype affiliated with the familiy Chlorobiaceae (DGGE band 21ws) ✘ ✘
A693r S-D-Arch-0693-a-A-15 primer 16S Archaea ✘ ✔
DFMI210 S-*-DfmI-0210-a-A-18 sulfate-reducing microbes 16S some Desulfotomaculum spp. of clusters Ic and Id ✘ ✘
KO 215 S-S-Yentb-0443-a-A-19 - 16S Yersinia enterocolitica ✘ ✘
Strepto10 — - 16S Streptococcus ✘ ✘
Ira1 — - 16S Azospirillum irakense and Rhodocista sp. AR2107 and AT2107 ✘ ✘
Corallc6 — - 16S Some Corallococcus ✘ ✘
Chlorb II 842 S-*-Chlorb II-0842-a-A-20 - 16S phylotype affiliated with the familiy Chlorobiaceae (DGGE band 24ws) ✘ ✘
Arch958R S-D-Arch-0958-a-A-19 primer 16S Archaea ✘ ✔
DFMI229 S-*-DfmI-0229-a-A-18 sulfate-reducing microbes 16S some Desulfotomaculum spp. of clusters Ib, Ic, and Id ✘ ✘
KO 216 S-S-Stpy-0174-a-A-21 - 16S Streptococcus pyogenes ✘ ✘
Strepto19 — - 16S Streptococcus ✘ ✘
Ira3 — - 16S Azospirillum irakense ✘ ✘
Corallc9 — - 16S Some Corallococcus ✘ ✘
Chlorb III 441 S-*-Chlorb III-0441-a-A-20 - 16S phylotype affiliated with the familiy Chlorobiaceae (DGGE bands 25s, 26s) ✘ ✘
805R S-D-Bact-0787-a-A-19 primer 16S Bacteria ✘ ✔
DFMIa641 S-*-DfmIa-0641-a-A-18 sulfate-reducing microbes 16S Desulfotomaculum spp. (cluster Ia) ✘ ✘
KO 218 S-S-Saur-0069-a-A-19 - 16S Staphylococcus aureus, S. haemolyticus ✘ ✘
Strepto27 — - 16S Streptococcus ✘ ✘
Ama2 — - 16S Azospirillum amazonense ✘ ✘