List of probes and primers

122 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
Lpar — animal and human associated microbiota, intestinal microbiota 23S Lactobacillus paracasei ✘ ✘
Lsak — animal and human associated microbiota, intestinal microbiota 23S Lactobacillus sakei ✘ ✘
Eubac576 S-St-xxxx-0576-a-A-18 animal and human associated microbiota, intestinal microbiota 16S Eubacterium sp. Trains L1-83 and A2-194 ✘ ✘
Copr60 S-St-xxxx-0060-a-A-18 animal and human associated microbiota, intestinal microbiota 16S Coprococcus sp. Strain L2-50 ✘ ✘
SER1410 L-G-Serp-1410-a-A-19 animal and human associated microbiota, intestinal microbiota 23S Brachyspira ✘ ✘
LasA3720_1281 S-*-LspA-1281-a-A-23 animal and human associated microbiota, intestinal microbiota 16S subgroup A of unclassified Lachnospiraceae OTU ✔ ✘
LasB3720_1281 S-*-LspB-1281-a-A-23 animal and human associated microbiota, intestinal microbiota 16S subgroup B of unclassified Lachnospiraceae OTU ✔ ✘
Bac16065_472 S-*-Bada-0472-a-A-24 animal and human associated microbiota, intestinal microbiota 16S unclassified Bacteroidales cluster S24-7 OTU ✔ ✘
Bac3732_846 S-*-Bada-0846-a-A-24 animal and human associated microbiota, intestinal microbiota 16S unclassified Bacteroidales cluster S24-7 OTU ✔ ✘
Bac11839_649 S-*-Bada-0649-a-A-23 animal and human associated microbiota, intestinal microbiota 16S unclassified Bacteroidales cluster S24-7 OTU ✔ ✘
Bac15326_476 S-*-Bada-0476-a-A-23 animal and human associated microbiota, intestinal microbiota 16S unclassified Bacteroidales cluster S24-7 OTU ✔ ✘
Bac13481_437 S-*-Bada-0437-a-A-22 animal and human associated microbiota, intestinal microbiota 16S unclassified Bacteroidales cluster S24-7 OTU ✔ ✘
All3256_484 S-*-Allb-0484-a-A-22 animal and human associated microbiota, intestinal microbiota 16S subgroup of genus Allobaculum ✔ ✘
Baci731A_87 S-*-Baci-0087-a-A-24 animal and human associated microbiota, intestinal microbiota 16S Bacteroides acidifaciens Group-2 ✔ ✘
Baci731B_87 S-*-Baci-0087-a-A-22 animal and human associated microbiota, intestinal microbiota 16S Bacteroides acidifaciens Group-1 ✔ ✘
Rum14644A_184 S-*-Ruco-0184-a-A-23 animal and human associated microbiota, intestinal microbiota 16S unclassified Oscillibacter OTU ✔ ✘
Rum14644B_64 S-*-Ruco-0064-a-A-24 animal and human associated microbiota, intestinal microbiota 16S unclassified Oscillibacter OTU ✔ ✘
Rum17903_443 S-*-Ruco-0443-a-A-20 animal and human associated microbiota, intestinal microbiota 16S unclassified Ruminococcaceae OTU ✔ ✘
LasA5944_580 S-*-LspA-0580-a-A-24 animal and human associated microbiota, intestinal microbiota 16S subgroup A of unclassified Lachnospiraceae OTU ✔ ✘
LasB5944_580 S-*-LspB-0580-a-A-24 animal and human associated microbiota, intestinal microbiota 16S subgroup B of unclassified Lachnospiraceae OTU ✔ ✘
Lab9057_570 S-S-Lbad-0570-a-A-23 animal and human associated microbiota, intestinal microbiota 16S Lactobacillus taiwanensis - L. johnsonii - L. gasseri group ✔ ✘
Lab2185_87 S-*-Lbre-0087-a-A-24 animal and human associated microbiota, intestinal microbiota 16S Lactobacillus reuteri ✔ ✘