List of probes and primers

198 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
Nsp436 — bacteria of relevance in wastewater treatment, ammonia-oxidizing bacteria 16S Nitrosospira spp. ✘ ✘
NspCL1_249 — bacteria of relevance in wastewater treatment, ammonia-oxidizing bacteria 16S Nitrosospira cluster 1 ✘ ✘
NspCL2_458 — bacteria of relevance in wastewater treatment, ammonia-oxidizing bacteria 16S Nitrosospira cluster 2 ✘ ✘
NspCL3_454 — bacteria of relevance in wastewater treatment, ammonia-oxidizing bacteria 16S Nitrosospira cluster 3 ✘ ✘
NspCL4_446 — bacteria of relevance in wastewater treatment, ammonia-oxidizing bacteria 16S Nitrosospira cluster 4 ✘ ✘
Nmo254 — bacteria of relevance in wastewater treatment, ammonia-oxidizing bacteria 16S Nitrosomonas ✘ ✘
Nmo254a — bacteria of relevance in wastewater treatment, ammonia-oxidizing bacteria 16S Nitrosomonas ✘ ✘
NmoCL6a_205 — bacteria of relevance in wastewater treatment, ammonia-oxidizing bacteria 16S Nitrosomonas cluster 6a ✘ ✘
NmoCL6b_376 — bacteria of relevance in wastewater treatment, ammonia-oxidizing bacteria 16S Nitrosomonas cluster 6b ✘ ✘
NmoCL7_439 — bacteria of relevance in wastewater treatment, ammonia-oxidizing bacteria 16S Nitrosomonas cluster 7 ✘ ✘
NLIMI 91 S-G-N.limI-0091-a-A-18 bacteria of relevance in wastewater treatment 16S Nostocoida limicola I ✔ ✘
NLIMII 175 S-S-N.limII-0175-a-A-18 bacteria of relevance in wastewater treatment 16S Nostocoida limicola II strains except strain Ben 70 ✔ ✘
NLIMII 192 S-S-N.limII-0192-a-A-18 bacteria of relevance in wastewater treatment 16S Nostocoida limicola II strain Ben 70 ✔ ✘
NLIMIII 301 S-S-N.limIII-0301-a-A-18 bacteria of relevance in wastewater treatment 16S Nostocoida limicola III strains ✔ ✘
NLIMIII 729 S-S-N.limIII-0729-a-A-18 bacteria of relevance in wastewater treatment 16S Nostocoida limicola III strain Ben 220 ✔ ✘
NLIMIII 830 S-S-N.limIII-0830-a-A-18 bacteria of relevance in wastewater treatment 16S Nostocoida limicola III strains except Ben 220 ✔ ✘
PAO651 (ACCBA651) S-G-Accba-0651-a-A-18 bacteria of relevance in wastewater treatment 16S Most members of the Candidatus Accumulibacter cluster ✔ ✘
GAOQ431 — bacteria of relevance in wastewater treatment 16S Candidatus Competibacter phosphatis ✔ ✘
GAOQ989 — bacteria of relevance in wastewater treatment 16S Candidatus Competibacter phosphatis ✔ ✘
AZA1006 S-*-Aza-1006-a-A-18 bacteria of relevance in wastewater treatment, dinitrogen-fixing bacteria, phototrophic bacteria 16S Most members of the Azoarcus cluster ✘ ✘
RHC630 S-*-RHC-0630-a-A-18 bacteria of relevance in wastewater treatment, dinitrogen-fixing bacteria 16S Most Thauera, Zoogloea, and Rhodocyclus spp. ✘ ✘
RHC143 S-*-RHC-0143-a-A-18 bacteria of relevance in wastewater treatment 16S Most members of the Dechloromonas-Ferribacterium-Quadricoccus-Azonexus, the Azospira, and the Rhodocyclus-Propionivibrio-Accumulibacter lineages, Zoogloea spp., and few members of the Azoarcus-Thauera-Denitromonas lineage ✘ ✘
ATDe442 S-*-ATDe-0442-a-A-18 bacteria of relevance in wastewater treatment 16S Activated sludge clones A33, H25, H30, H35, S3, S10, and S23 of the Azoarcus-Thauera-Denitromonas lineage ✘ ✘
ATDe830 S-*-ATDe-0830-a-A-18 bacteria of relevance in wastewater treatment 16S Activated sludge clones A33, H25, H30, H35, S3, S10, and S23 of the Azoarcus-Thauera-Denitromonas lineage ✘ ✘
S3-486 S-*-S3-0486-a-A-18 bacteria of relevance in wastewater treatment 16S activated sludge clone S3 ✘ ✘