List of probes and primers

103 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
ALF1B S-Sc-aProt-0019-a-A-17 higher taxonomic levels 16S Alphaproteobacteria, some Deltaproteobacteria, Spirochaetes ✔ ✘
ALF968 — higher taxonomic levels 16S Alphaproteobacteria, except of Rickettsiales ✔ ✘
ARC344 — higher taxonomic levels 16S Archaea ✘ ✘
ARCH915 (ARC915) S-D-Arch-0915-a-A-20 higher taxonomic levels 16S Archaea ✘ ✘
BAC303 S-*-Bacto-0303-a-A-17 higher taxonomic levels 16S most Bacteroidaceae and Prevotellaceae, some Porphyromonadaceae ✔ ✘
BET42a L-C-bProt-1027-a-A-17 higher taxonomic levels 23S Betaproteobacteria ✔ ✘
CF319a — higher taxonomic levels 16S most Flavobacteria, some Bacteroidetes, some Sphingobacteria ✔ ✘
CF319b — higher taxonomic levels 16S some Flavobacteria and Sphingobacteria ✔ ✘
CFB1082 — higher taxonomic levels 16S most members of the class Bacteroidetes ✘ ✘
CFB286 — higher taxonomic levels 16S most members of the genus Tannerella and the genus Prevotella of the class Bacteriodetes ✔ ✘
CFB563 — higher taxonomic levels 16S most Flavobacteria ✔ ✘
CFB719 — higher taxonomic levels 16S most members of the class Bacteriodetes, some Flavobacteria and Sphingobacteria ✔ ✘
CFB972 — higher taxonomic levels 16S some Flavobacteria ✔ ✘
Chls-0523 S-O-Chls-0523-a-A-18 higher taxonomic levels, bacteria of medical or hygienical relevance 16S Chlamydiales ✔ ✘
CIV/V1342 — higher taxonomic levels 16S heterocystous strains of cyanobacteria (sections IV and V) ✘ ✘
CYA361 — higher taxonomic levels 16S most Cyanobacteria ✘ ✘
CYA664 — higher taxonomic levels 16S most Cyanobacteria ✘ ✘
CYA762 — higher taxonomic levels 16S most Cyanobacteria ✘ ✘
EUB338 (Bact338) (bacterial) S-D-Bact-0338-a-A-18 higher taxonomic levels 16S most Bacteria ✔ ✘
EUB338 II (SBACT P 338) S-*-BactP-0338-a-A-18 higher taxonomic levels 16S Planctomycetales ✔ ✘
EUB338 III (SBACT V 338) S-*-BactV-0338-a-A-18 higher taxonomic levels 16S Verrucomicrobiales ✔ ✘
EUK516 — higher taxonomic levels 18S Eukarya ✔ ✘
EURY498 S-K-Eury-0498-a-A-14 higher taxonomic levels 16S most Euryarchaeota ✔ ✘
Fibro S-G-Fibr-0153-a-S-16 higher taxonomic levels 16S Fibrobacter ✘ ✘
GAM42a L-C-gProt-1027-a-A-17 higher taxonomic levels 23S Gammaproteobacteria ✔ ✘