List of probes and primers

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Entered target organism: Sar.

32 probes found.

Hit type Probe name Full name (Alm et al.) Target rRNA Specificity FISH Primer
Spec DCC868 S-*-Dsb-0868-a-A-18 16S Desulfosarcina sp., Desulfonema spp., Desulfococcus sp., Desulfobacterium spp., Desulfobotulus sp., Desulfostipes sp., Desulfomusa sp.
Spec DSC193 S-*-Dsb-0193-a-A-18 16S Desulfosarcina variabilis
Spec DSS225 16S Desulfosarcina and many other Desulfobacteraceae
Spec MB1 16S Methanosarcina frisius, Methanosarcina sp., Methanosarcina acidovorans, Methanosarcina thermophila, Methanosarcina barkeri
Spec MB3 16S Methanosarcina frisius, Methanosarcina acidovorans, Methanosarcina thermophila, Methanosarcina barkeri
Spec MB4 16S Methanosarcina thermophila, Methanosarcina barkeri
Spec MS1414 16S Methanosarcina spp., Methanococcoides spp., Methanolobus spp., Methanohalophilus spp.
Spec MS821 S-G-Msar-0821-a-A-24 16S Methanosarcina frisius, Methanosarcina spp., Methanosarcina acidovorans, Methanosarcina thermophila, Methanosarcina barkeri, Methanoholophilus mahii, Methanophilus sp.
Spec MSMX860 16S Methanosarcina spp., Methanococcoides spp., Methanolobus spp., Methanohalophilus spp., Methanosaeta spp.
Spec SARCI551 S-G-Sarci-0551-a-A-20 16S genus Methanosarcina
Spec SARCI645 S-G-Sarci-0645-a-A-19 16S genus Methanosarcina
Spec DSSDBM194 S-*-DssDbm-0194-a-A-18 16S Desulfosarcina variabilis, Desulfobacterium cetonicum
Spec DSSDBM217 S-*-DssDbm-0217-a-A-18 16S Desulfosarcina variabilis, Desulfobacterium cetonicum
Spec DSSDBM998 S-*-DssDbm-0998-a-A-18 16S Desulfosarcina variabilis, Desulfobacterium cetonicum
Spec DSSDBM1286 S-*-DssDbm-1286-a-A-18 16S Desulfosarcina variabilis, Desulfobacterium cetonicum
Spec SAR86-1249 16S SAR 86 cluster
Spec EURY499 16S Methanosarcina, Methanosaeta, Methanomicrobiales groups and VAL 47,VAL 1, VAL9, VAL78 clones
Spec Poly_862 S-G-Poly-0862-a-A-18 16S Polynucleobacter necessarius-cluster
Spec MS821 16S Methanosarcina
Spec MS1414 16S Methanosarcina, Methanococcoides, Methanolobus
Spec MSMX860 16S Methanosarcinales (all Methanosarcina and Methanosaeta)
Spec DSS449 16S Some Desulfosarcina
Spec SAR92_627 16S SAR92 clade
Spec Tess3 16S Tessaracoccus
Spec Metsar4 16S Methylosarcina cluster