List of probes and primers

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Entered target organism: Methanosarcina.

18 probes found.

Hit type Probe name Full name (Alm et al.) Target rRNA Specificity FISH Primer
Exact SARCI551 S-G-Sarci-0551-a-A-20 16S genus Methanosarcina ✔ ✘
Exact SARCI645 S-G-Sarci-0645-a-A-19 16S genus Methanosarcina ✔ ✘
Exact MB3 — 16S Methanosarcina frisius, Methanosarcina acidovorans, Methanosarcina thermophila, Methanosarcina barkeri ✘ ✘
Exact MB4 — 16S Methanosarcina thermophila, Methanosarcina barkeri ✘ ✘
Exact MB1 — 16S Methanosarcina frisius, Methanosarcina sp., Methanosarcina acidovorans, Methanosarcina thermophila, Methanosarcina barkeri ✘ ✘
Exact MS821 — 16S Methanosarcina ✔ ✘
Spec MB1 — 16S Methanosarcina frisius, Methanosarcina sp., Methanosarcina acidovorans, Methanosarcina thermophila, Methanosarcina barkeri ✘ ✘
Spec MB3 — 16S Methanosarcina frisius, Methanosarcina acidovorans, Methanosarcina thermophila, Methanosarcina barkeri ✘ ✘
Spec MB4 — 16S Methanosarcina thermophila, Methanosarcina barkeri ✘ ✘
Spec MS1414 — 16S Methanosarcina spp., Methanococcoides spp., Methanolobus spp., Methanohalophilus spp. ✔ ✘
Spec MS821 S-G-Msar-0821-a-A-24 16S Methanosarcina frisius, Methanosarcina spp., Methanosarcina acidovorans, Methanosarcina thermophila, Methanosarcina barkeri, Methanoholophilus mahii, Methanophilus sp. ✔ ✘
Spec MSMX860 — 16S Methanosarcina spp., Methanococcoides spp., Methanolobus spp., Methanohalophilus spp., Methanosaeta spp. ✔ ✘
Spec SARCI551 S-G-Sarci-0551-a-A-20 16S genus Methanosarcina ✔ ✘
Spec SARCI645 S-G-Sarci-0645-a-A-19 16S genus Methanosarcina ✔ ✘
Spec EURY499 — 16S Methanosarcina, Methanosaeta, Methanomicrobiales groups and VAL 47,VAL 1, VAL9, VAL78 clones ✔ ✘
Spec MS821 — 16S Methanosarcina ✔ ✘
Spec MS1414 — 16S Methanosarcina, Methanococcoides, Methanolobus ✔ ✘
Spec MSMX860 — 16S Methanosarcinales (all Methanosarcina and Methanosaeta) ✔ ✘