Details of the microarray

Array name Description Technique Reference
16S rRNA-based taxonomic microarray 16S rRNA-based taxonomic microarray for assessing bacterial community diversity. The prototype microarray is composed of 122 probes that target bacteria at various taxonomic levels from phyla to species (mostly Alphaproteobacteria). - Development and validation of a prototype 16S rRNA-based taxonomic microarray for Alphaproteobacteria. Sanguin H, Herrera A, Oger-Desfeux C, Dechesne A, Simonet P, Navarro E, Vogel TM, Moënne-Loccoz Y, Nesme X, Grundmann GL. Environmental microbiology. 2006. Pubmed: 16423016

The following probes are part of the array:

Aci1 (pB-2043), Aci2 (pB-2044), Liq1 (pB-2045), Inteur1 (pB-2046), Azo1 (pB-2047), Azo5 (pB-2048), Ira1 (pB-2049), Ira3 (pB-2050), Ama2 (pB-2051), Rhodo2 (pB-2052), Pha (pB-2053), Rho1 (pB-2054), Rho2 (pB-2055), Wol3 (pB-2056), Wol4 (pB-2057), Ehrli1 (pB-2058), Cow1 (pB-2059), Holo1 (pB-2060), Caedi1 (pB-2061), Rhodobact1B (pB-2062), Rhodovo1A (pB-2063), Sphingo5A (pB-2064), Sphingo5B (pB-2065), Rhi (pB-2066), Rhizo157 (pB-2067), Agro157 (pB-2068), B6-128 (pB-2069), C58-128 (pB-2070), TT111-128 (pB-2071), AF310-128 (pB-2072), Arub128 (pB-2073), Avit128 (pB-2074), B6-437 (pB-2075), B6-603 (pB-2076), C58-604 (pB-2077), Rhizo1-2 (pB-2078), Rgal128 (pB-2079), Rgal157 (pB-2080), Barto2 (pB-2081), Amino1 (pB-2082), Meso1 (pB-2083), Brady4 (pB-2084), Brady6A (pB-2085), Brady6B (pB-2086), Hypho1 (pB-2087), Hypho2 (pB-2088), Ancy1 (pB-2089), Blast1 (pB-2090), Xan (pB-2091), Methylo1 (pB-2092), Burkho4A (pB-2093), Burkho4B (pB-2094), Burkho4C (pB-2095), Mallei2 (pB-2096), Mallei3 (pB-2097), Dechlo2 (pB-2098), Arcus1 (pB-2099), Arcus2 (pB-2100), Nit1A (pB-2101), Nit1B (pB-2102), Nit1C (pB-2103), Herb1 (pB-2104), Oxa2 (pB-2105), Var1 (pB-2106), Pic1 (pB-2107), Achro1 (pB-2108), Pho1 (pB-2109), Pro1A (pB-2110), Pro1B (pB-2111), Verru3 (pB-2112), Actino3 (pB-2113), Fibrobacter (pB-2114), Acido-a (pB-2115), Acido-c (pB-2116), Plasmo (pB-2117)