Probe details

Rint623
Accession no. pB-735
Full name (Alm et al.) S-*-Rint-0623-a-A-18
Categories animal and human associated microbiota
intestinal microbiota
Specificity Roseburia cecicola, Roseburia intestinalis, human gut isolates L1-81, L1-83, L1-8151, L1-82, L1-952, L1-810, L1-93, A2-194, and A1-86, bacterium clones adhufec8, adhufec225, adhufec150, and adhufec75.25 rumen clones 4C28d-8, 4C3d-14, and 3C3d-8
Taxonomy Roseburia; Lachnospiraceae; Lachnospirales; Clostridia; Bacillota; Bacillati; Bacteria; cellular organisms
Sequence 5'-TTC CAA TGC AGT ACC GGG-3'
Length [nt] 18
G+C content [%] 56
Target rRNA 16S
Position 623-640
Formamide -
Check specificity/coverage SILVA TestProbe
References Oligonucleotide probes that detect quantitatively significant groups of butyrate-producing bacteria in human feces. Hold GL, Schwiertz A, Aminov RI, Blaut M, Flint HJ. Applied and environmental microbiology. 2003. Pubmed: 12839823
Molecular diversity, cultivation, and improved detection by fluorescent in situ hybridization of a dominant group of human gut bacteria related to Roseburia spp. or Eubacterium rectale. Aminov RI, Walker AW, Duncan SH, Harmsen HJ, Welling GW, Flint HJ. Applied and environmental microbiology. 2006. Pubmed: 16957265
Remarks No formamide used hybridization temperature: 54° C. Helper probe available: GTTGAGCCCCGGGCTTT.