Probe details

ECO-3

Accession no. pB-714
Full name (Alm et al.) -
Categories
Specificity Escherichia coli ATCC 25922 GenBank no. (GI) 7110561
Taxonomy Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacterales; Gammaproteobacteria; Pseudomonadota; Pseudomonadati; Bacteria; cellular organisms
Sequence 5'-CAT CCA CGG AAG TTT TCA GAG ATG AGA ATG TGC CTT CGG-3'
Length [nt] 39
G+C content [%] 49
Target rRNA 16S
Position 1-38
Formamide -
Check specificity/coverage SILVA TestProbe
References Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples. Wang RF, Beggs ML, Robertson LH, Cerniglia CE. FEMS microbiology letters. 2002. Pubmed: 12167534
Remarks See Table 1 in reference for orientation (5apos to 3apos or 3apos to 5apos) of the probe sequence