Probe details

RCA-1

Accession no. pB-688
Full name (Alm et al.) -
Categories
Specificity Ruminococcus callidus ATCC 27760 GenBank no. (GI) 854410
Taxonomy Ruminococcus callidus; Ruminococcus; Oscillospiraceae; Eubacteriales; Clostridia; Bacillota; Bacillati; Bacteria; cellular organisms
Sequence 5'-CAT GGA TTC GCA TGT TTC TGT GAT CAA AGA TTT ATC GCT TAG A-3'
Length [nt] 43
G+C content [%] 37
Target rRNA 16S
Position 1-42
Formamide -
Check specificity/coverage SILVA TestProbe
References Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples. Wang RF, Beggs ML, Robertson LH, Cerniglia CE. FEMS microbiology letters. 2002. Pubmed: 12167534
Remarks See Table 1 in reference for orientation (5apos to 3apos or 3apos to 5apos) of the probe sequence