Tested for in situ hybridization.
| Accession no. | pB-636 |
| Full name (Alm et al.) | S-S-E.con-1122-a-A-20 |
| Categories |
animal and human associated microbiota intestinal microbiota |
| Specificity | Eubacterium contortum |
| Taxonomy | Faecalicatena contorta; Faecalicatena; Lachnospiraceae; Lachnospirales; Clostridia; Bacillota; Bacillati; Bacteria; cellular organisms |
| Sequence | 5'-GGC CTA AAC CGC TGG CTA CT-3' |
| Length [nt] | 20 |
| G+C content [%] | 60 |
| Target rRNA | 16S |
| Position | 1122-1141 |
| Formamide | - |
| Check specificity/coverage |
SILVA TestProbe |
| References |
Quantification of different Eubacterium spp. in human fecal samples with species-specific 16S rRNA-targeted oligonucleotide probes. Schwiertz A, Le Blay G, Blaut M. Applied and environmental microbiology. 2000. Pubmed: 10618251 |
| Remarks | Probe sequence in reference are reversly oriented. Dispecies-specific probe because of cross-hybridization: also specific for Eubacterium fissicartena. Hybridization temperature 55° C. |