Probe details
DELTA495b
Tested for in situ hybridization.
|
| Accession no. |
pB-433 |
| Full name (Alm et al.) |
S-*-dProt-0495-b-A-18 |
| Categories |
higher taxonomic levels
sulfate-reducing microbes
|
| Specificity |
some Deltaproteobacteria |
| Taxonomy |
Deltaproteobacteria;
delta/epsilon subdivisions;
Bacteria;
cellular organisms
|
| Sequence |
5'-AGT TAG CCG GCG CTT CCT-3' |
| Length [nt] |
18 |
| G+C content [%] |
61 |
| Target rRNA |
16S |
| Position |
495-512 |
| Formamide |
35 |
| Check specificity/coverage |
SILVA TestProbe
|
| References |
Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment. Loy A, Lehner A, Lee N, Adamczyk J, Meier H, Ernst J, Schleifer KH, Wagner M. Applied and environmental microbiology. 2002. Pubmed: 12324358
Improved 16S rRNA-targeted probe set for analysis of sulfate-reducing bacteria by fluorescence in situ hybridization. Lücker S, Steger D, Kjeldsen KU, MacGregor BJ, Wagner M, Loy A. Journal of microbiological methods. 2007. Pubmed: 17408790
|
| Remarks |
Use probes DELTA495a, DELTA495b, and DELTA495c in equimolar mixture to detect most Deltaproteobacteria |