Probe details

Hal180

Tested for in situ hybridization.

Accession no. pB-3976
Full name (Alm et al.) S-S-Hal-180-a-A-22
Categories
Specificity Some Halomonas populations
Taxonomy Halomonas; Halomonadaceae; Oceanospirillales; Gammaproteobacteria; Pseudomonadota; Pseudomonadati; Bacteria; cellular organisms
Sequence 5'-CCT GCT TTC TTC CTC AGA ACG T-3'
Length [nt] 22
G+C content [%] 50
Target rRNA 16S
Position 180-201
Formamide 0
Check specificity/coverage SILVA TestProbe
References 'Candidatus Halomonas phosphatis', a novel polyphosphate-accumulating organism in full-scale enhanced biological phosphorus removal plants. Nguyen HT, Nielsen JL, Nielsen PH. Environmental microbiology. 2012. Pubmed: 22827168
Remarks Two helper probes were used in the original publication: H180-1 (ATGCGGTATTAGCGCCCC) H180-2 (CACAAGGCCTTGCGGTCC)