Probe details

DEF988

Tested for in situ hybridization.

Accession no. pB-1203
Full name (Alm et al.) S-S-Bact-1020-a-A-22
Categories
Specificity Defluvicoccus vanus-related organisms, cluster 2
Taxonomy Defluviicoccus vanus; Defluviicoccus; Rhodospirillaceae; Rhodospirillales; Alphaproteobacteria; Pseudomonadota; Pseudomonadati; Bacteria; cellular organisms
Sequence 5'-GAT ACG ACG CCC ATG TCA AGG G-3'
Length [nt] 22
G+C content [%] 59
Target rRNA 16S
Position 988-1009
Formamide 35
Check specificity/coverage SILVA TestProbe
References Putative glycogen-accumulating organisms belonging to the Alphaproteobacteria identified through rRNA-based stable isotope probing. Meyer RL, Saunders AM, Blackall LL. Microbiology (Reading, England). 2006. Pubmed: 16436430
Remarks helper probes: pos966-987 CTGGTAAGGTTCTGCGCGTTG, pos1038-1064 AGCGCCATGCAGCACCTGTGTGGCGT