Probe details

GAM42a_T1038

Tested for in situ hybridization.

Accession no. pB-1169
Full name (Alm et al.) -
Categories higher taxonomic levels
Specificity Representatives of the Xanthomonas group
Taxonomy Lysobacteraceae; Lysobacterales; Gammaproteobacteria; Pseudomonadota; Pseudomonadati; Bacteria; cellular organisms
Sequence 5'-GCC TTT CCA CAT CGT TT-3'
Length [nt] 17
G+C content [%] 47
Target rRNA 23S
Position 1027-1043
Formamide 35
Check specificity/coverage SILVA TestProbe
References Discrepancies in the widely applied GAM42a fluorescence in situ hybridisation probe for Gammaproteobacteria. Siyambalapitiya N, Blackall LL. FEMS microbiology letters. 2005. Pubmed: 15621461
Remarks -