Tested for in situ hybridization.
| Accession no. | pB-1146 |
| Full name (Alm et al.) | - |
| Categories |
methanogenic archaea |
| Specificity | Methanosarcina, Methanococcoides, Methanolobus |
| Taxonomy | Methanosarcinales; Methanomicrobia; Stenosarchaea group; Methanobacteriota; Methanobacteriati; Archaea; cellular organisms |
| Sequence | 5'-CTC ACC CAT ACC TCA CTC GGG-3' |
| Length [nt] | 21 |
| G+C content [%] | 62 |
| Target rRNA | 16S |
| Position | 1414-1434 |
| Formamide | 50 |
| Check specificity/coverage |
SILVA TestProbe |
| References |
Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens. Raskin L, Stromley JM, Rittmann BE, Stahl DA. Applied and environmental microbiology. 1994. Pubmed: 7517128 An update and optimisation of oligonucleotide probes targeting methanogenic Archaea for use in fluorescence in situ hybridisation (FISH). Crocetti G, Murto M, Björnsson L. Journal of microbiological methods. 2006. Pubmed: 16126291 |
| Remarks | helper nucleotide hMS1395: ggtttgacgggcggtgtg helper nucleotide hMS1480: cgacttaaccccccttgc |