Probes/primers found for taxon: Bacteria
| Hit type | Short name | Name (Alm et al.) | Specificity |
|---|---|---|---|
| Exact | 1027R | S-D-Bact-1046-a-A-19 | Bacteria |
| Exact | 1046R | S-D-Bact-1028-b-A-19 | Bacteria |
| Exact | 1050R | S-D-Bact-1050-a-A-16 | Bacteria |
| Exact | 1061R | S-D-Bact-1061-a-A-17 | Bacteria |
| Exact | 1061Rv | S-D-Bact-1061-a-A-20 | Bacteria |
| Exact | 1099F | S-D-Bact-1099-a-S-16 | Bacteria |
| Exact | 1100R | S-D-Bact-1100-a-A-15 | Bacteria |
| Exact | 1114R | S-D-Bact-1091-a-A-16 | Bacteria |
| Exact | 1391R | S-D-Bact-1391-b-A-17 | Bacteria |
| Exact | 1401R | S-D-Bact-1385-a-A-17 | Bacteria |
| Exact | 1407R | S-D-Bact-1392-a-A-16 | Bacteria |
| Exact | 1492R | S-D-Bact-1492-a-A-22 | Bacteria |
| Exact | 1492Rc | S-D-Bact-1494-a-A-20 | Bacteria |
| Exact | 27F | S-D-Bact-0008-c-S-20 | Bacteria |
| Exact | 338 | S-D-Bact-0338-a-A-19 | Bacteria |
| Exact | 343F | S-D-Bact-0343-a-S-15 | Bacteria |
| Exact | 347F | S-D-Bact-0347-a-S-19 | Bacteria |
| Exact | 39F | S-D-Bact-0019-a-S-20 | Bacteria |
| Exact | 41F | S-D-Bact-0021-a-S-20 | Bacteria |
| Exact | 5 | Bacteria | |
| Exact | 517F | S-D-Bact-0517-a-S-17 | Bacteria |
| Exact | 518F | S-D-Bact-0518-a-S-17 | Bacteria |
| Exact | 518R | S-D-Bact-0518-a-A-17 | Bacteria |
| Exact | 520F | S-D-Bact-0564-a-S-15 | Bacteria |
| Exact | 527f | S-D-Bact-0517-a-S-16 | Bacteria |
| Exact | 530F | S-D-Bact-0515-a-S-16 | Bacteria |
| Exact | 533F | S-D-Bact-0516-a-S-18 | Bacteria |
| Exact | 533R | S-D-Bact-0515-a-A-19 | Bacteria |
| Exact | 534R | S-D-Bact-0517-a-A-18 | Bacteria |
| Exact | 536r | S-D-Bact-0519-a-A-18 | Bacteria |
| Exact | 6 | Bacteria | |
| Exact | 630R | S-D-Bact-1529-a-A-17 | Bacteria |
| Exact | 63F | S-D-Bact-0043-s-S-21 | Bacteria |
| Exact | 64F | S-D-Bact-0044-a-S-21 | Bacteria |
| Exact | 68F | S-D-Bact-0049-a-S-21 | Bacteria |
| Exact | 6F | S-D-Bact-0006-a-S-20 | Bacteria |
| Exact | 7 | Bacteria | |
| Exact | 784F | S-D-Bact-0784-a-S-15 | Bacteria |
| Exact | 798R | S-D-Bact-0784-a-A-15 | Bacteria |
| Exact | 8 | Bacteria | |
| Exact | 802R | S-D-Bact-0785-b-A-18 | Bacteria |
| Exact | 803R | S-D-Bact-0785-a-A-19 | Bacteria |
| Exact | 805R | S-D-Bact-0787-a-A-19 | Bacteria |
| Exact | 806R | S-D-Bact-0787-b-A-20 | Bacteria |
| Exact | 8F | S-D-Bact-0002-a-S-26 | Bacteria |
| Exact | 8f, 616V | S-D-Bact-0008-b-S-20 | Bacteria |
| Exact | 8F, pA | S-D-Bact-0008-a-S-20 | Bacteria |
| Exact | 9 | Bacteria | |
| Exact | 907R | S-D-Bact-0907-a-A-20 | Bacteria |
| Exact | 908R | S-D-Bact-0908-a-A-18 | Bacteria |
| Exact | 909F | S-D-Bact-0909-a-S-18 | Bacteria |
| Exact | 917F | S-D-Bact-0917-a-S-16 | Bacteria |
| Exact | 917Fw | S-D-Bact-0917-a-S-19 | Bacteria |
| Exact | 926r | S-D-Bact-0907-a-A-19 | Bacteria |
| Exact | 967F | S-D-Bact-0967-a-S-19 | Bacteria |
| Exact | 967R | S-D-Bact-0967-a-A-19 | Bacteria |
| Exact | 968F | S-D-Bact-0968-a-S-17 | Bacteria |
| Exact | 970F | S-D-Bact-0970-a-S-16 | Bacteria |
| Exact | 986F | S-D-Bact-0967-c-S-19 | Bacteria |
| Exact | 9bF | S-D-Bact-0009-a-S-19 | Bacteria |
| Exact | B-V3.ASR | S-D-Bact-1028-a-A-20 | Bacteria |
| Exact | B1055f (Bergen) | S-D-Bact.1055-a-S-16 | Bacteria |
| Exact | b341F | S-D-Bact-0341-a-S-17 | Bacteria |
| Exact | b785 | S-D-Bact-0785-a-A-19 | Bacteria |
| Exact | Bac1046Rb | S-D-Bact-1028-c-A-19 | Bacteria |
| Exact | Bac1046Rc | S-D-Bact-1028-d-A-19 | Bacteria |
| Exact | Bac1046Rd | S-D-Bact-1028-e-A-19 | Bacteria |
| Exact | Bac927R | S-D-Bact-0927-a-A-17 | Bacteria |
| Exact | Bac967Fb | S-D-Bact-0967-d-S-19 | Bacteria |
| Exact | Bac967Fc | S-D-Bact-0967-e-S-19 | Bacteria |
| Exact | Bac967Fd | S-D-Bact-0967-f-S-19 | Bacteria |
| Exact | Bac967Fe | S-D-Bact-0967-g-S-19 | Bacteria |
| Exact | Bact1492 | S-D-Bact-1492-b-A-16 | most Bacteria |
| Exact | Bact340F | S-D-Bact-0340-a-S-19 | Bacteria |
| Exact | bact363F | S-D-Bact-0371-a-S-20 | Bacteria |
| Exact | Bact531R | S-D-Bact-0521-a-A-20 | Bacteria |
| Exact | Bact806R | S-D-Bact-0781-a-A-26 | Bacteria |
| Exact | Bakt_341F | S-D-Bact-0341-b-S-17 | Bacteria |
| Exact | Bakt_805R | S-D-Bact-0785-a-A-21 | Bacteria |
| Exact | bio-pBR5apos.SEF | S-D-Bact-0006-a-S-22 | Bacteria |
| Exact | bio-pJBS-V3.SEF | S-D-Bact-0947-a-S-20 | Bacteria |
| Exact | bio-pJBS-V3.SER | S-D-Bact-0947-a-A-20 | Bacteria |
| Exact | E11 | Eubacteria | |
| Exact | E806R | S-D-Bact-0787-a-A-20 | Bacteria |
| Exact | EUB338 (Bact338) (bacterial) | S-D-Bact-0338-a-A-18 | most Bacteria |
| Exact | EUB342 | Most Bacteria | |
| Exact | Eub927 | S-D-Eub-0927-a-A-18 | most Bacteria |
| Exact | GM12R | S-D-Bact-1175-a-A-19 | Bacteria |
| Exact | GM3F | S-D-Bact-0008-a-S-16 | Bacteria |
| Exact | GM4R | S-D-Bact-1492-a-A-16 | Bacteria |
| Exact | P338f | S-D-Bact-0337-a-S-20 | Bacteria |
| Exact | P518r | S-D-Bact-0518-a-A-17 | Bacteria |
| Exact | P609D | S-D-Bact-0785-a-S-18 | Bacteria |
| Exact | P609R | S-D-Bact-0785-a-A-18 | Bacteria |
| Exact | P63F | S-D-Bact-0042-a-S-21 | Bacteria |
| Exact | pBR-V1.ASF | S-D-Bact-0101-a-S-20 | Bacteria |
| Exact | pBR-V1.ASR | S-D-Bact-0101-a-A-20 | Bacteria |
| Exact | pH | S-D-Bact-1522-a-A-20 | Bacteria |
| Exact | Primer 2 | S-D-Bact-0340-a-A-18 | Bacteria |
| Exact | Primer 3 | S-D-Bact-0518-c-A-17 | Bacteria |
| Exact | R357 | S-D-Bact-0343-a-A-15 | Bacteria |
| Exact | UNIV1389a | S-D-Univ-1389-a-A-18 | Bacteria, not Epsilonproteobacteria |
| Exact | UNIVER | all Bacteria | |
| Spec | 1046R | S-D-Bact-1046-b-A-19 | Bacteria |
| Spec | Ab789F | S-*-Univ-0789-a-S-18 | Bacteria, Archaea, Eukarya |
| Spec | Ab906F | S-*-Univ-0906-a-S-17 | Bacteria, Archaea, Eukarya |
| Spec | ABl0199 | some acidophilic Acidobacteriaceae and an acid mine drainage clone | |
| Spec | ABl1002 | some acidophilic Acidobacteriaceae | |
| Spec | ACCBA651 | S-*-Accba-0651-a-A-18 | most bacteria of the Candidatus Accumulibacter phosphatis cluster |
| Spec | AcI-1214 | acI lineage of limnic Actinobacteria | |
| Spec | AcI-840-1 (AC840a) | Subgroup of acI lineage (Actinobacteria) | |
| Spec | AcI-840-2 (AC840b) | Subgroup of acI lineage (Actinobacteria) | |
| Spec | Acido-a | Uncultured Acidobacteria (Acidobacteria_6 cluster) | |
| Spec | Acido-c | Uncultured Acidobacteria (Acidobacteria_4 cluster) | |
| Spec | ACIDO228 | Acidobacteria subdivision 1 | |
| Spec | AcidoUnc3 | Uncultured Acidobacteria (Acidobacteria_4 cluster) | |
| Spec | AcidUnc | Uncultured Acidobacteria (Acidobacteria_6 cluster) | |
| Spec | actino-1011 | S-S-HGC-1011-a-A-19 | Tetrasphaera japonica, enhanced biological phosphorus removal clone Ebpr19, Ebpr20 (Actinobacteria) |
| Spec | Actino-221 | S-S-Actino-221-a-A-18 | Actinobacterial PAO |
| Spec | Actino-658 | S-S-Actino-658-a-A-18 | Actinobacterial PAO |
| Spec | Actino837 | specific for phylotype Rs-Q42/RsW01-017 in Propionibacteriaceae | |
| Spec | ALF1B | S-Sc-aProt-0019-a-A-17 | Alphaproteobacteria, some Deltaproteobacteria, Spirochaetes |
| Spec | ALF4-1322 | alpha4-subgroup of Proteobacteria | |
| Spec | ALF682 | S-Sc-aProt-0682-a-A-18 | Alphaproteobacteria from sludge anaerobic digesters |
| Spec | ALF73a | some Alphaproteobacteria | |
| Spec | ALF968 | Alphaproteobacteria, except of Rickettsiales | |
| Spec | Alvi2 | Unidentified Epsilonproteobacteria affiliated to Alvinella | |
| Spec | Alvi3 | Unidentified Epsilonproteobacteria affiliated to Alvinella | |
| Spec | Alvi4 | Unidentified Epsilonproteobacteria affiliated to Alvinella | |
| Spec | Alvi5 | Unidentified Epsilonproteobacteria affiliated to Alvinella | |
| Spec | Amx1900 | L-*-Amx-1900-a-A-21 | anaerobic ammonium-oxidizing bacteria, Candidatus `Brocadia anammoxidansapos and Candidatus `Kuenenia stuttgartiensisapos |
| Spec | Amx368 | S-*-Amx-0368-a-A-18 | all ANAMMOX bacteria |
| Spec | Amx820 | S-*-Amx-0820-a-A-22 | anaerobic ammonium-oxidizing bacteria, Candidatus `Brocadia anammoxidansapos and Candidatus `Kuenenia stuttgartiensisapos |
| Spec | AQI338 | Phylum Aquificae (except Desulfurobacteriaceae) | |
| Spec | Arco2 | Unidentified Epsilonproteobacteria affiliated to Arcobacter | |
| Spec | b-AO233 | Betaproteobacterial ammonia-oxidizing bacteria | |
| Spec | b1273 | mealybug betaproteobacterial endosymbionts | |
| Spec | b162 | mealybug betaproteobacterial endosymbionts | |
| Spec | b886 | mealybug betaproteobacterial endosymbionts | |
| Spec | b91 | mealybug betaproteobacterial endosymbionts | |
| Spec | BET42a | L-C-bProt-1027-a-A-17 | Betaproteobacteria |
| Spec | BET940 | Betaproteobacteria (excepted Comamonadaceae, Nitrosomonadaceae and Methylophilaceae) | |
| Spec | Beta1 | Betaproteobacteria | |
| Spec | Beta2 | Betaproteobacteria | |
| Spec | Beta3 | Betaproteobacteria | |
| Spec | Beta4 | Betaproteobacteria | |
| Spec | Betthio1001 | L-G-bThiob-1001-a-A-21 | Betaproteobacterial Thiobacilli |
| Spec | Bif228 | S-G-Bif-228-a-A-18 | Bifidobacteria |
| Spec | BONE23A | beta1-group of Betaproteobacteria | |
| Spec | BSC0459 | acid mine drainage beta-proteobacterial clones | |
| Spec | CF319a | most Flavobacteria, some Bacteroidetes, some Sphingobacteria | |
| Spec | CF319b | some Flavobacteria and Sphingobacteria | |
| Spec | CFB563 | most Flavobacteria | |
| Spec | CFB719 | most members of the class Bacteriodetes, some Flavobacteria and Sphingobacteria | |
| Spec | CFB972 | some Flavobacteria | |
| Spec | CFX1223 | phylum Chloroflexi (green nonsulfur bacteria) | |
| Spec | CIV/V1342 | heterocystous strains of cyanobacteria (sections IV and V) | |
| Spec | CYA361 | most Cyanobacteria | |
| Spec | CYA664 | most Cyanobacteria | |
| Spec | CYA762 | most Cyanobacteria | |
| Spec | DAF1030 | S-*-D.A.F-1030-a-A-18 | Some bacteria of the Dechloromonas-Ferribacterium-Quadricoccus-Azonexus lineage |
| Spec | DELTA495a | S-C-dProt-0495-a-A-18 | Most Deltaproteobacteria and most Gemmatimonadetes |
| Spec | DELTA495b | S-*-dProt-0495-b-A-18 | some Deltaproteobacteria |
| Spec | DELTA495c | S-*-dProt-0495-c-A-18 | some Deltaproteobacteria |
| Spec | DSBO224 | Desulfobotulus sapovorans, Desulfovibrio fairfieldensis, and other Deltaproteobacteria | |
| Spec | DSMON1283 | S-*-Dsmon-1283-a-A-18 | Uncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon2, 3, 4, 5, and 8) |
| Spec | DSMON446 | S-*-Dsmon-0446-a-A-18 | Uncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon2 and 4) |
| Spec | DSMON447 | S-*-Dsmon-0447-a-A-18 | Uncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon3, 5, and 8) |
| Spec | DSMON468a | S-*-Dsmon-0468-a-A-18 | Uncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon3, 5, and 8) |
| Spec | DSMON468b | S-*-Dsmon-0468-b-A-18 | Uncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon2 and 4) |
| Spec | DSMON999 | S-*-Dsmon-0999-a-A-18 | Uncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon2, 3, 4, 5, and 8 Cadagno Lake clones 618, 624, 626, 650, and 651) |
| Spec | DSS658 | S-*-Dsb-0658-a-A-18 | Desulfobacteraceae and other Bacteria |
| Spec | DSV (DSV321) | Some Desulfovibrionaceae, Desulfomicrobiaceae, Desulfohalobiaceae, and other Bacteria | |
| Spec | E1e3 1150 | S-*-Ualp-1150-a-A-18 | some unclassified Alphaproteobacteria |
| Spec | EBAC1790 | S-*-EBAC-1790-a-A-18 | Enterobacteriaceae |
| Spec | Ent | Enterobacteriaceae except Proteus spp. | |
| Spec | ENT183 | Enterobacteriaceae | |
| Spec | Enter1432 | S-G-Enter-1432-a-A-15 | enteric group (Enterobacteriales) |
| Spec | enter5 | Enterobacteriaceae | |
| Spec | Enterbact B | some members of the Enterobacteriaceae and Vibrionaceae | |
| Spec | Enterbact D | some members of the Enterobacteriaceae | |
| Spec | Ep1 | Uncultured Epsilonproteobacteria affiliated to Nautiliaceae | |
| Spec | Epsi1 | Uncultured Epsilonproteobacteria affiliated to Sulfirimonas/Thiomicrospira | |
| Spec | Epsi3 | Uncultured Epsilonproteobacteria affiliated to Sulfirimonas/Thiomicrospira | |
| Spec | EPSY1384 | S-C-eProt-1384-a-A-18 | Epsilonproteobacteria |
| Spec | EPSY549 | S-C-eProt-0549-a-A-18 | Epsilonproteobacteria |
| Spec | EPSY914 | S-C-eProt-0914-a-A-18 | Epsilonproteobacteria |
| Spec | EUB338_V | S-D-Bact-0338-a-A-18 | Candidatus Cyrtobacter comes some Chloroflexi some Firmicutes some Proteobacteria |
| Spec | FL197 | marine uncultured Flavobacteria clade VIS4 | |
| Spec | FL845 | marine uncultured Flavobacteria clade VIS2 | |
| Spec | FMR0732 | some iron-oxidising acidophilic Actinobacteria and some acid mine drainage clones | |
| Spec | Fuso1 | Fusobacteriales | |
| Spec | gam1-1246 | “Candidatus Gilliamella apicola” or Gamma-1 (symbiotic Gammaproteobacteria phylotype in honey bee) | |
| Spec | Gam1019 | S-S-g-Prot-1019-a-A-18 | phosphate accumulating bacteria (Gammaproteobacteria) |
| Spec | Gam1278 | S-S-g-Prot-1278-a-A-20 | phosphate accumulating bacteria (Gammaproteobacteria) |
| Spec | GAM42a | L-C-gProt-1027-a-A-17 | Gammaproteobacteria |
| Spec | GAM42a_A1041_A1040 | Representatives of the Xanthomonas group and the Alphaproteobacteria, Brevundimonas diminuta | |
| Spec | GB | novel gammaproteobacterial group | |
| Spec | GB_1 and 2 | novel gammaproteobacterial group | |
| Spec | GB_2 | novel gammaproteobacterial group | |
| Spec | GB_3 | novel gammaproteobacterial group | |
| Spec | GB_4 | novel gammaproteobacterial group | |
| Spec | GB_5 | novel gammaproteobacterial group | |
| Spec | GB_6 (Gam1019) | novel gammaproteobacterial group | |
| Spec | GB_7 | novel gammaproteobacterial group | |
| Spec | GB_G1 (GAOQ989) | novel gammaproteobacterial group | |
| Spec | GB_G2 | novel gammaproteobacterial group | |
| Spec | GeoHolo2 | Geothrix and Holophaga (Acidobacteria_8 cluster) | |
| Spec | GNSB-941 | phylum Chloroflexi (green nonsulfur bacteria) | |
| Spec | GSB-532 | S-F-GSB-532-a-A-15 | green sulfur bacteria, Chlorobiaceae |
| Spec | GSB-822 | S-F-GSB-822-a-A-19 | green sulfur bacteria, Chlorobiaceae |
| Spec | HGC236 | Actinobacteria | |
| Spec | HGC69A (HGC) | L-P-Grps-1901-a-A-18 | Actinobacteria (high G+C Gram-positive bacteria) |
| Spec | HoAc1402 | S-*-HoAc-1402-a-A-18 | Acidobacteria, activated sludge clones A22, A34, H3, H44, S6 |
| Spec | I. leu. (IleuSYM581) | Gammaproteobacterial symbiont of Inanidrilus leukodermatus | |
| Spec | IRog1 | phylum Acidobacteria group a | |
| Spec | IRog2 | phylum Acidobacteria group a | |
| Spec | Leifs5 | Microbacteriaceae | |
| Spec | Leifs6 | Microbacteriaceae | |
| Spec | LGC0355 | Firmicutes (Low G+C gram-positive bacteria) | |
| Spec | LGC354A | Firmicutes (Gram-positive bacteria with low G+C content) | |
| Spec | LGC354B | Firmicutes (Gram-positive bacteria with low G+C content) | |
| Spec | LGC354C | Firmicutes (Gram-positive bacteria with low G+C content) | |
| Spec | LKC1006 | S-*-eProt-1006-a-A-18 | Epsilonproteobacterial group II from Lower Kane Cave |
| Spec | LKC59 | S-*-eProt-0059-a-A-18 | Epsilonproteobacterial group I from Lower Kane Cave |
| Spec | LS_ALP761 | L-*-Sub7–0761-a-A-18 | Parts of Acidobacterial subgroup 7 (including LS_LKC21_kan1, DON29, DON30, DON31) |
| Spec | LS_HOL189 | L-P-Acido-0189-a-A-18 | Acidobacteria |
| Spec | LS_subd8_SGB1223 | L-*-Sub8–1223-a-A-18 | Acidobacterial subgroup 8 LS_LKC11_kan2, LS_LKC22_kan3, LS_LKC11_kan4, LS_LKC21_kan5 (LS_LKC11_kan6), clone ZC6, G. fermentans, H. foetida |
| Spec | LS_subd8_SGB1420 | L-*-Sub8-1420-a-A-18 | Acidobacterial subgroup 8 LS_LKC11_kan2, LS_LKC22_kan3, LS_LKC11_kan4, LS_LKC21_kan5, LS_LKC11_kan6, clone ZC6, G. fermentans, H. foetida, |
| Spec | MB1174 | Methanobacteriales (minus Methanothermus) | |
| Spec | MB311 | Methanobacteriales | |
| Spec | MIB661 | S-S-Bacm-0661-a-A-18 | mouse intestinal bacteria |
| Spec | MIB724 | S-S-Bacm-0724-a-A-18 | mouse intestinal bacteria |
| Spec | NITROSO4E | Betaproteobacterial ammonia-oxidizing bacteria | |
| Spec | NOR1-56 | NOR1 lineage (Gammaproteobacteria) | |
| Spec | NOR2-1453 | NOR2 cluster group A (Gammaproteobacteria) | |
| Spec | NOR5-130 | NOR5 isolate KT71 (Gammaproteobacteria) | |
| Spec | NOR5-730 | NOR5 cluster (Gammaproteobacteria) | |
| Spec | Nost993 | S-*-Nost-993-a-A-18 | Filamentous Alphaproteobacteria |
| Spec | Nsc825 | S-*-Nsc-0825-a-A-18 | betaproteobacterial AOB |
| Spec | Nscoc128 | S-*-Nscoc-128-a-A-18 | Nitrosococcus oceani, N. halophilus (Gammaproteobacteria) |
| Spec | NSMR34 | Nitrosospira tenius-like ammonia-oxidizing bacteria | |
| Spec | NSMR76 | Nitrosomonas marina-like ammonia-oxidizing bacteria | |
| Spec | Nso1225 | S-F-bAOB-1224-a-A-20 | Betaproteobacterial ammonia-oxidizing bacteria |
| Spec | Nso190 | S-F-bAOB-0189-a-A-19 | Betaproteobacterial ammonia-oxidizing bacteria |
| Spec | O. tan. (OtanSYM581) | Gammaproteobacterial symbiont of Olavius tantalus | |
| Spec | OalgDEL136 | Deltaproteobacterial symbiont of Olavius algarvensis | |
| Spec | OalgGAM445 | Gammaproteobacterial, sulfur-oxidizing symbiont of Olavius algarvensis | |
| Spec | OcraDEL1 | Deltaproteobacterial symbiont 1 of Olavius crassitunicatus | |
| Spec | OcraDEL2 | Deltaproteobacterial symbiont 2 of Olavius crassitunicatus | |
| Spec | OcraDEL3 | Deltaproteobacterial symbiont 3 of Olavius crassitunicatus | |
| Spec | OP11-2 | Uncultured eubacteria WCHB1 (OP11 division) | |
| Spec | OP11-3 | Uncultured eubacteria (OP11 division) | |
| Spec | OP11-4 | Uncultured eubacteria (OP11 division) | |
| Spec | OP11-5 | Uncultured eubacteria WCHB1 (OP11 division) | |
| Spec | OTU43/44-360 | S-*-OTU43/44-0360-a-A-18 | Acidobacteria group a, activated sludge clones A22, A34, H3 |
| Spec | P1425 | S-*-Univ-1525-a-A-17 | Bacteria, Archaea, Eukarya |
| Spec | P699D | S-*-Univ-1100-a-S-15 | Bacteria, Archaea, Eukarya |
| Spec | P699R | S-*-Univ-1100-a-A-15 | Bacteria, Archaea, Eukarya |
| Spec | Plancto13 | Uncultured anoxic bacteria affiliated to candidatus Kuenenia | |
| Spec | Plancto14 | Uncultured anoxic bacteria affiliated to candidatus Kuenenia | |
| Spec | Plancto15 | Uncultured anoxic bacteria affiliated to candidatus Kuenenia | |
| Spec | POR1130 | Candidate phylum “Poribacteria” | |
| Spec | POR389 | Candidate phylum “Poribacteria” | |
| Spec | POR600 | Candidate phylum “Poribacteria” | |
| Spec | PPx1002 | S-*-PPx-1002-a-A-18 | Filamentous Alphaproteobacteria |
| Spec | Psc-523 | Piscichlamydia salmonis (and few other unrelated bacteria) | |
| Spec | PTB-all/646 | Alphaproteobacterial clade (all PTB) | |
| Spec | R-BT065 | subgroup of Betaproteobacteria | |
| Spec | Rc988 | Rhodocyclus spp., Candidatus Accumulibacter phosphatis, and related bacteria | |
| Spec | RhizoLCSA2 | Maize rhizosphere clones affiliated to Acidobacteria (Acidobacteria_7 cluster) | |
| Spec | RhizoLCSA3 | Maize rhizosphere clones affiliated to Acidobacteria (Acidobacteria_7 cluster) | |
| Spec | RhizoLCSA4 | Maize rhizosphere clones affiliated to Acidobacteria (Acidobacteria_7 cluster) | |
| Spec | RhizoLCSA6 | Maize rhizosphere clones affiliated to Acidobacteria (Acidobacteria_6 cluster) | |
| Spec | Rzbc1247 | Rhizobiaceae, Brucellaceae, Bartonella, Phyllobacteriaceae, Blastochloris, Azospirillum irakense and A. amazonense | |
| Spec | S-*-GNS-0667-a-A-18 | S-*-GNS-0667-a-A-18 | OTU 11 and 12 of GNSB (green nonsulfur bacteria) |
| Spec | S448 | S-*-Tcs-0448-a-A-21 | Thiocystis gelatinosa-related bacteria (clone 130 and strain 448.10, Lake Cadagno) |
| Spec | S453D | S-*-Lpc-0453-a-A-26 | Lamprocystis-related bacteria (strain D21 and clone 261, Lake Cadagno) |
| Spec | S453F | S-*-Lpc-0453-b-A-26 | Lamprocystis - related bacteria (clones 335, 371 and strain cad16, Lake Cadagno) |
| Spec | S453H | S-*-Tcs-0453-a-A-26 | Thiocystis minor-related bacteria (clones 222, 13 and strain H1.1, Lake Cadagno) |
| Spec | SBR9-1a | S-D-s91a-0578-b-A-20 | Alphaproteobacterial SBR9 clone 1 (AY254694) |
| Spec | SBR9-1b | S-D-s91a-0778-b-A-18 | Alphaproteobacterial SBR9 clone 1 (AY254694) |
| Spec | SPA649 | Uncultured humic and acidic lake Spartobacteria | |
| Spec | SPA714 | Most Spartobacteria and uncultured relatives | |
| Spec | SRB385 (SRB) | S-*-Srb-0385-a-A-18 | Most Desulfovibrionales and other Bacteria |
| Spec | SRB385Db | Desulfobacterales, Desulfuromonales, Syntrophobacterales, Myxococcales, and other Bacteria | |
| Spec | SS_HOL1400 | S-P-Acido-1400-a-A-17 | Acidobacteria |
| Spec | SUL90 | S-*-Sul-0090-a-A-18 | Subgroup of Epsilonproteobacteria (Uncultured Helicobacteraceae, Clone GD17b, Clone GD17a) |
| Spec | SYBAC587a | S-*-Sybac-0587-a-A-18 | Uncultured Syntrophobacter-related bacteria (Schlöppnerbrunnen I soil clones SbISybac13, 15, and 19 Schlöppnerbrunnen II soil clones SbIISybac12-1, 1-2, 3-2, and 13-2) |
| Spec | SYBAC587b | S-*-Sybac-0587-b-A-18 | Uncultured Syntrophobacter-related bacteria (Schlöppnerbrunnen I soil clones SbISybac16 Schlöppnerbrunnen II soil clones SbIISybac25-1, 6-2, and 8-2) |
| Spec | T25-1028 | clone T25 and T19 of a subgroup within the Betaproteobacteria | |
| Spec | T25-220 | clone T25 and other clones of a subgroup within the Betaproteobacteria, not clone T19 | |
| Spec | T28-1435 | clone T28 and T29 of a subgroup within the Alphaproteobacteria | |
| Spec | T28-649 | clone T28 and T29 of a subgroup within the Alphaproteobacteria, Sphingomonas capsulata | |
| Spec | Thio-1032 | S-*-Thio-1032-a-A-18 | some Thiobacillus and some unclassified Betaproteobacteria |
| Spec | U1053F | S-*-Univ-1053-a-S-16 | Bacteria, Archaea, Eukarya |
| Spec | U1053R | S-*-Univ-1053-a-A-16 | Bacteria, Archaea, Eukarya |
| Spec | U1510R | S-*-Univ-1492-a-A-21 | Bacteria, Archaea, Eukarya |
| Spec | U1517R | S-*-Univ-1492-a-A-19 | Bacteria, Archaea, Eukarya |
| Spec | U341F | S-*-Univ-0341-b-S-17 | Bacteria, Archaea, Eukarya |
| Spec | U515F | S-*-Univ-0515-a-S-19 | Bacteria, Archaea, Eukarya |
| Spec | U519F | S-*-Univ-0519-a-S-18 | Bacteria, Archaea, Eukarya |
| Spec | U529R | S-*-Univ-0522-a-A-18 | Bacteria, Archaea, Eukarya |
| Spec | U751F | S-*-Univ-0750-a-S-18 | Bacteria, Archaea, Eukarya |
| Spec | U779F | S-*-Univ-0779-a-S-20 | Bacteria, Archaea, Eukarya |
| Spec | U906R | S-*-Univ-0906-a-A-17 | Bacteria, Archaea, Eukarya |
| Spec | UA1406R | S-*-Univ-1390-a-A-17 | Bacteria, Archaea, Eukarya |
| Spec | Ualp-1109 | S-*-Ualp-1109-a-A-18 | some unclassified Alphaproteobacteria |
| Spec | Ubac-1241 | S-*-Ubac-1241-a-A-18 | some unclassified Bacteria |
| Spec | Ubac-1430 | S-*-Ubac-1430-a-A-18 | some unclassified Bacteria |
| Spec | Ubet-0834 | S-*-Ubet-0834-a-A-18 | some unclassified Betaproteobacteria |
| Spec | uBet-0984 | S-*-uBet-0984-a-A-18 | some unclassified Betaproteobacteria |
| Spec | Ubet-0990 | S-*-Ubet-0990-a-A-21 | some unclassified Betaproteobacteria |
| Spec | unCyst1 | Unculcured Cystobacteriaceae | |
| Spec | unCyst2 | Unculcured Cystobacteriaceae | |
| Spec | unCyst3 | Unculcured Cystobacteriaceae | |
| Spec | Uni1390R | S-*-Univ-1390-a-A-18 | Bacteria, Archaea, Eukarya |
| Spec | Uni1392R | S-*-Univ-1392-a-A-15 | Bacteria, Archaea, Eukarya |
| Spec | Uni522R | S-*-Univ-0517-a-A-15 | Bacteria, Archaea, Eukarya |
| Spec | Urobe63a | S-*-Urobe-0063-a-A-20 | uncultured Ruminococcus obeum-like bacteria |
| Spec | Urobe63b | S-*-Urobe-0063-b-A-20 | uncultured Ruminococcus obeum-like bacteria |
| Spec | VIS1-575 | marine uncultured Flavobacteria clade VIS1 | |
| Spec | VIS3-183 | marine uncultured Flavobacteria clade VIS3 | |
| Spec | VIS5-586 | marine uncultured Flavobacteria clade VIS5 | |
| Spec | VIS6-814 | marine uncultured Flavobacteria clade VIS6 | |
| Spec | VSO673 | Unattached, vacuolate, sulfur-oxidizing bacteria | |
| Spec | WJ20646 | acidophilic gamma-Proteobacteria WJ2 and PK51 and some acid mine drainage clones | |
| Spec | XenoGam441 | Xenoturbella bocki gammaproteobacterial endosymbiont and relatives | |
| Spec | XenoGam666 | Xenoturbella bocki gammaproteobacterial endosymbiont and relatives | |
| Spec | XenoGam727 | Xenoturbella bocki gammaproteobacterial endosymbiont and relatives |
