| Aqua828 | S-*-Aqua-0828-a-A-18 | 16S rRNA | Aquabacterium spp. |
| Pomo828 | S-*-Pomo-0828-a-A-18 | 16S rRNA | Polaromonas vacuolata |
| Gor596 | S-G-Gor-0596-a-A-22 | 16S rRNA | Gordonia (Gordona) |
| Fibr225 | S-G-Fibr-0225-a-A-21 | 16S rRNA | Fibrobacter |
| ACA652 (ACA23A) | S-G-Acin-0652-a-A-18 | 16S rRNA | Acinetobacter |
| Ade441 | | 16S rRNA | Alcaligenes defragans |
| ALBO34a | | 23S rRNA | Bordetella spp., Alcaligenes spp. (sensu stricto) |
| ALF1B | S-Sc-aProt-0019-a-A-17 | 16S rRNA | Alphaproteobacteria, some Deltaproteobacteria, Spirochaetes |
| ALF4-1322 | | 16S rRNA | alpha4-subgroup of Proteobacteria |
| ALF921 | | 16S rRNA | Nevskia ramosa clone NO22 |
| ALF968 | | 16S rRNA | Alphaproteobacteria, except of Rickettsiales |
| AT1458 | | 16S rRNA | Azoarcus-Thauera cluster |
| Azo1251 | | 16S rRNA | Azoarcus tolulyticus strains Tol-4, Td-1, Td-15, Td-17, Td-19, Td-21, A. evansii KB740, Azoarcus sp. strain pF6 |
| AZA483 | S-*-Aza-0645-a-A-18 | 16S rRNA | Azoarcus cluster |
| BAC303 | S-*-Bacto-0303-a-A-17 | 16S rRNA | most Bacteroidaceae and Prevotellaceae, some Porphyromonadaceae |
| Bcv13b | | 23S rRNA | Burkholderia vietnamensis, B. cepacia |
| BET42a | L-C-bProt-1027-a-A-17 | 23S rRNA | Betaproteobacteria |
| LSPotu11021-1127 | S-*-Lsp-1127-a-A-20 | 16S rRNA | Lachnospiraceae OTU_11021 |
| BONE23A | | 16S rRNA | beta1-group of Betaproteobacteria |
| BTWO23A | | 16S rRNA | competitor for BONE23A |
| CF319a | | 16S rRNA | most Flavobacteria, some Bacteroidetes, some Sphingobacteria |
| CF319b | | 16S rRNA | some Flavobacteria and Sphingobacteria |
| CFB286 | | 16S rRNA | most members of the genus Tannerella and the genus Prevotella of the class Bacteriodetes |
| CFB563 | | 16S rRNA | most Flavobacteria |
| CFB719 | | 16S rRNA | most members of the class Bacteriodetes, some Flavobacteria and Sphingobacteria |
| CFB972 | | 16S rRNA | some Flavobacteria |
| Chls-0523 | S-O-Chls-0523-a-A-18 | 16S rRNA | Chlamydiales |
| cl81-644 | | 16S rRNA | Few Desulfobacteraceae |
| CREN499 | S-K-Cren-0499-a-A-18 | 16S rRNA | most Crenarchaeota |
| 660(DBB660) | S-G-Dsbb-0660-a-A-20 | 16S rRNA | some Desulfobulbus |
| 221(DBM221) | S-G-Dsbm-0221-a-A-20 | 16S rRNA | Desulfobacterium vacuolatum, D. niacini, D. autotrophicum |
| DCC209 | S-S-Dcc.mv-0209-a-A-18 | 16S rRNA | Desulfococcus multivorans |
| DEM1164r | | 16S rRNA | Desulfotomaculum cluster I and other Firmicutes |
| DNMA657 | | 16S rRNA | some Desulfonema |
| DRM432 | | 16S rRNA | Desulfuromonas spp., Pelobacter spp. |
| 129(DSB129) | S-G-Dsb-0129-a-A-18 | 16S rRNA | most Desulfobacter |
| DSB985 | | 16S rRNA | Desulfobacter, Desulfobacula, Desulfospira, and Desulfotignum |
| DSBAC355 | | 16S rRNA | most Desulfobacterales and Syntrophobacterales |
| DSBO224 | | 16S rRNA | Desulfobotulus sapovorans, Desulfovibrio fairfieldensis, and other Deltaproteobacteria |
| DSC193 | S-*-Dsb-0193-a-A-18 | 16S rRNA | Desulfosarcina variabilis |
| DSD131 (DSVAE131) | S-S-Dsv.ae-0131-a-A-18 | 16S rRNA | Desulfovibrio aestuarii |
| DSF672 | | 16S rRNA | Desulfofrigus, Desulfofaba gelida, Desulfomusa hansenii |
| DSMA488 | | 16S rRNA | Desulfarculus baarsii, Desulfomonile tiedjei, and Syntrophus |
| DSR651 | S-*-Dsb-0651-a-A-18 | 16S rRNA | Some Desulfobulbaceae |
| DSS225 | | 16S rRNA | Desulfosarcina and many other Desulfobacteraceae |
| DSS658 | S-*-Dsb-0658-a-A-18 | 16S rRNA | Desulfobacteraceae and other Bacteria |
| DSV1292 | S-*-Dsv-1292-a-A-18 | 16S rRNA | Some Desulfovibrio and Bilophila wadsworthia |
| DSV214 | | 16S rRNA | Most Desulfomicrobium |
| DSV407 | | 16S rRNA | Few Desulfovibrionaceae, Desulfohalobiaceae, and Desulfonatronumaceae |
| 687(DSV687) | S-F-Dsv-0687-a-A-16 | 16S rRNA | Most Desulfovibrionales (excluding Lawsonia) and many Desulfuromonales |
| DSV698 | | 16S rRNA | Some Desulfovibrio, Bilophila wadsworthia, and Lawsonia intracellularis |
| Dtm(bcd)230 | S-*-Dtm(bcd)-0230-a-A-18 | 16S rRNA | Many Desulfotomaculum cluster I and other Firmicutes |
| Dtm229 | S-G-Dtm-0229-a-A-18 | 16S rRNA | Desulfotomaculum cluster I and other Firmicutes |
| ECO1167 (ECO 45A) | | 23S rRNA | Escherichia coli |
| EUB338 (Bact338) (bacterial) | S-D-Bact-0338-a-A-18 | 16S rRNA | most Bacteria |
| EUB338 II (SBACT P 338) | S-*-BactP-0338-a-A-18 | 16S rRNA | Planctomycetales |
| EUB338 III (SBACT V 338) | S-*-BactV-0338-a-A-18 | 16S rRNA | Verrucomicrobiales |
| EUK516 | | 18S rRNA | Eukarya |
| EURY498 | S-K-Eury-0498-a-A-14 | 16S rRNA | most Euryarchaeota |
| FFE8b | | 16S rRNA | Flavobacterium ferrugineum |
| gam1-1246 | | 16S rRNA | “Candidatus Gilliamella apicola” or Gamma-1 (symbiotic Gammaproteobacteria phylotype in honey bee) |
| G123T | S-G-Thioth-697-a-A-18 | 16S rRNA | Thiothrix eikelboomii, T. nivea, T. unzii, T. fructosivorans, T. defluvii, Eikelboom type 021N group I, II, III |
| G1B | S-*-021Ng1-1029-a-A-18 | 16S rRNA | Eikelboom type 021N group I |
| G2M | S-*-021Ng2-842-a-A-18 | 16S rRNA | Eikelboom type 021N group II |
| G3M | S-*-021Ng3-996-a-A-18 | 16S rRNA | Eikelboom type 021N group III |
| GAM42a | L-C-gProt-1027-a-A-17 | 23S rRNA | Gammaproteobacteria |
| Goam192 | S-S-G.am-0192-a-A-18 | 16S rRNA | Gordona amarae |
| H7-1014 | S-*-H7-1014-a-A-18 | 16S rRNA | activated sludge clone H7 |
| HGC69A (HGC) | L-P-Grps-1901-a-A-18 | 23S rRNA | Actinobacteria (high G+C Gram-positive bacteria) |
| HoAc1402 | S-*-HoAc-1402-a-A-18 | 16S rRNA | Acidobacteria, activated sludge clones A22, A34, H3, H44, S6 |
| Hvu1034 | | 16S rRNA | Hyphomicrobium vulgare |
| HYD208 | | 16S rRNA | Hydrogenophaga spp. |
| HYD56B | | 23S rRNA | Hydrogenophaga spp. |
| Hydr540 | S-O-Hydr-0540-a-A-19 | 16S rRNA | Aquificales |
| LEG226 | | 16S rRNA | Legionellaceae |
| LEG705 | | 16S rRNA | Legionella |
| LEGPNE1 | | 16S rRNA | Legionella pneumophila |
| LGC354A | | 16S rRNA | Firmicutes (Gram-positive bacteria with low G+C content) |
| LGC354B | | 16S rRNA | Firmicutes (Gram-positive bacteria with low G+C content) |
| LGC354C | | 16S rRNA | Firmicutes (Gram-positive bacteria with low G+C content) |
| MB1174 | | 16S rRNA | Methanobacterium spp., Methanobrevibacter spp., Methanosphaera spp. |
| MC1109 | | 16S rRNA | Methanococcus spp. |
| MS1414 | | 16S rRNA | Methanosarcina spp., Methanococcoides spp., Methanolobus spp., Methanohalophilus spp. |
| MS821 | S-G-Msar-0821-a-A-24 | 16S rRNA | Methanosarcina frisius, Methanosarcina spp., Methanosarcina acidovorans, Methanosarcina thermophila, Methanosarcina barkeri, Methanoholophilus mahii, Methanophilus sp. |
| MSMX860 | | 16S rRNA | Methanosarcina spp., Methanococcoides spp., Methanolobus spp., Methanohalophilus spp., Methanosaeta spp. |
| MX825 | | 16S rRNA | Methanosaeta spp. |
| Myb736a | S-*-Myb-0736-a-A-22 | 16S rRNA | Mycobacterium complex |
| Myb736b | S-*-Myb-0736-b-A-22 | 16S rRNA | Mycobacterium complex |
| NAL1208 | | 16S rRNA | Nevskia clones NO2 and NO11, Mycoplana bullata, Brevundimonas diminuta |
| NAL657 | | 16S rRNA | Nevskia clones NO2 and NO11 |
| NIT3 | S-G-Nbac-1035-a-A-18 | 16S rRNA | Nitrobacter spp. |
| NmV (Ncmob) | S-S-Nmob-0174-a-A-18 | 16S rRNA | Nitrosococcus mobilis (Nitrosomonas) lineage |
| NONEUB (NON338) (non-Bact338) | | 16S rRNA | control probe complementary to EUB338 |
| Nse1472 | S-*-Nse-1472-a-A-18 | 16S rRNA | Nitrosomonas europea, N. halophila, N. eutropha, Kraftisried-Isolat Nm103 |
| Nsm156 | S-G-Nsm-0155-a-A-19 | 16S rRNA | Nitrosomonas spp., Nitrosococcus mobilis |
| Nso1225 | S-F-bAOB-1224-a-A-20 | 16S rRNA | Betaproteobacterial ammonia-oxidizing bacteria |
| Nso190 | S-F-bAOB-0189-a-A-19 | 16S rRNA | Betaproteobacterial ammonia-oxidizing bacteria |
| Nsv443 | | 16S rRNA | Nitrosospira spp. |
| Ntcoc84 | S-*-Ntcoc-84-a-A-18 | 16S rRNA | Nitrococcus mobilis |
| Ntspa1026 | S-*-Ntspa-1026-a-A-18 | 16S rRNA | Nitrospira moscoviensis, activated sludge clones A4 and A11 |
| Ntspa662 | S-G-Ntspa-662-a-A-18 | 16S rRNA | genus Nitrospira |
| Ntspa712 | S-*-Ntspa-712-a-A-21 | 16S rRNA | most members of the phylum Nitrospirae |
| Ntspn693 | S-*-Ntspn-693-a-A-20 | 16S rRNA | Nitrospina gracilis |
| OTU1-1415 | S-*-OTU1-1415-a-A-20 | 16S rRNA | Zoogloea ramigera, activated sludge clones A16, H7, H10, H11, H13, H22, H27. H40, S21 |
| OTU14-129 | S-*-OTU14-0129-a-A-20 | 16S rRNA | Hyphomicrobium spp., activated sludge clones A7b, A39 |
| OTU16-1027 | S-*-OTU16-1027-a-A-18 | 16S rRNA | activated sludge clones H4, H6, H29, S7 |
| OTU16-1350 | S-*-OTU16-1350-a-A-18 | 16S rRNA | activated sludge clones H4, H6, H29, S7 |
| OTU17-66 | S-*-OTU17-0066-a-A-20 | 16S rRNA | activated sludge clones H46, S43 |
| OTU2-132 (ATDe132) | S-*-ATDe-0132-a-A-18 | 16S rRNA | Activated sludge clones A33, H25, H30, H35, S3, S10, and S23 of the Azoarcus-Thauera-Denitromonas lineage |
| OTU2-467 | S-*-OTU2-0467-a-A-20 | 16S rRNA | activated sludge clones A33, H25, H30, H35, S3, S10, S23 |
| OTU25to31-1406 | S-*-OTU25to31-1406-a-A-18 | 16S rRNA | some Anaerolineae |
| OTU26-650 | S-*-OTU26-0650-a-A-18 | 16S rRNA | activated sludge clones A11b, A30, H1, H19 |
| OTU28-1346 | S-*-OTU28-1346-a-A-18 | 16S rRNA | activated sludge clones H39, S41 |
| STEBA1426 | S-*-Steba-1426-a-A-18 | 16S rRNA | Some members of the Sterolibacterium lineage |
| OTU31-656 | S-*-OTU31-0656-a-A-18 | 16S rRNA | activated sludge clones H8, S9 |
| OTU32-208 | S-*-OTU32-0208-a-A-18 | 16S rRNA | activated sludge clones A31, S47 |
| OTU32-630 | S-*-OTU32-0630-a-A-18 | 16S rRNA | activated sludge clones A31, S47 |
| OTU3-445 | S-*-OTU3-0445-a-A-20 | 16S rRNA | activated sludge clones A13, H12, H20, H23, S28, S40 |
| OTU43/44-360 | S-*-OTU43/44-0360-a-A-18 | 16S rRNA | Acidobacteria group a, activated sludge clones A22, A34, H3 |
| OTU45-720 | S-*-OTU45-0720-a-A-20 | 16S rRNA | activated sludge clones H44 and S6, soil clone C105, soil clone 11-25, Antarctic lake ice clone LB3-30 |
| OTU4-645 | S-*-OTU4-0645-a-A-18 | 16S rRNA | Alcaligenes latus, activated sludge clones A2, A26b |
| OTU6-178 | S-*-OTU6-0178-a-A-18 | 16S rRNA | Brachymonas denitrificans, activated sludge clone A6b |
| PAR1244 | S-G-Parc-1244-a-A-19 | 16S rRNA | genus Paracoccus |
| PAR1457 | S-G-Parc-1457-a-A-18 | 16S rRNA | genus Paracoccus |
| PAR651 | S-G-Parc-0651-a-A-18 | 16S rRNA | genus Paracoccus |
| Pdv1031 | | 16S rRNA | Paracoccus denitrificans, P. versutus |
| Pdv198 | | 16S rRNA | Paracoccus denitrificans, P. versutus |
| PLA46 | S-P-Planc-0046-a-A-18 | 16S rRNA | Planctomycetales |
| PLA886 | S-P-Planc-0886-a-A-19 | 16S rRNA | Planctomycetes |
| Ppu56a | | 23S rRNA | Pseudomonas putida, P. mendocina |
| PS56a | | 23S rRNA | most true Pseudomonas spp. |
| Ps-Ag1 | | 23S rRNA | Pseudomonas fluorescens Ag1 |
| SARCI551 | S-G-Sarci-0551-a-A-20 | 16S rRNA | genus Methanosarcina |
| SARCI645 | S-G-Sarci-0645-a-A-19 | 16S rRNA | genus Methanosarcina |
| SRB385 (SRB) | S-*-Srb-0385-a-A-18 | 16S rRNA | Most Desulfovibrionales and other Bacteria |
| SRB385Db | | 16S rRNA | Desulfobacterales, Desulfuromonales, Syntrophobacterales, Myxococcales, and other Bacteria |
| SUBU1237 | | 16S rRNA | Burkholderia spp., Sutterella spp. |
| Sval428 | | 16S rRNA | Some Desulfobulbaceae (excluding most Desulfobulbus |
| Tbcil832 | S-*-Tbcil-0832-a-A-18 | 16S rRNA | thermophilic Bacillus spp. |
| Thus438 | S-G-Thus-0438-a-A-18 | 16S rRNA | Thermus spp. |
| Ttoga660 | S-*-Ttoga-0660-a-A-18 | 16S rRNA | Thermotogales |
| UNIV1390 | S-*-Univ-1390-a-A-18 | 16S rRNA | all Organisms |
| XAN818 | | 16S rRNA | Xanthomonas branch |
| ZAL | | 16S rRNA | Zoogloea ramigera ATCC 19623 |
| ZBE | | 16S rRNA | Zoogloea ramigera ATCC 25935 |
| ZRA23a (ZRA,ZOGLO647) | S-*-Zoglo-0647-a-A-18 | 16S rRNA | Most members of the Zoogloea lineage, not Z. resiniphila |
| PcaeC9 | S-S-PcaeC9-217-a-A-18 | 16S rRNA | Candidatus Paracaedibacter acanthamoebae (endosymbiont of Acanthamoeba sp. UWC9) |
| PcaeE39 | S-S-PcaeE339-217-a-A-18 | 16S rRNA | Candidatus Paracaedibacter symbiosus (endosymbiont of Acanthamoeba sp. UWE39) |
| CaeAc998 | S-S-CaeAc-998-a-A-18 | 16S rRNA | Candidatus Caedibacter acanthamoebae (endosymbiont of Acanthamoeba polyphaga HN-3) |
| Mg705 | | 16S rRNA | type I methanotrophs |
| Mg84 | | 16S rRNA | type I methanotrophs |
| Ma450 | | 16S rRNA | type II methanotrophs (Methylosinus/Methylocystis spp.) |
| Ma464 | | 16S rRNA | type II methanotrophs |
| Mg669 | | 16S rRNA | Methylobacter spp., Methylomonas spp. |
| Mg1004 | | 16S rRNA | Methylomicrobium |
| Stemal | | 16S rRNA | Stenotrophomonas maltophilia |
| Burcep | | 16S rRNA | Burkholderia cepacia |
| Burkho | | 16S rRNA | Burkholderia spp. |
| Haeinf | | 16S rRNA | Haemophilus influenzae |
| Sau | | 16S rRNA | Staphylococcus aureus |
| Spn | | 16S rRNA | Streptococcus pneumoniae |
| Ent | | 16S rRNA | Enterobacteriaceae except Proteus spp. |
| Kpn | | 23S rRNA | Klebsiella pneumoniae |
| Caal | | 18S rRNA | Candida albicans |
| Cagl | | 18S rRNA | Candida (Torulopsis) glabrata |
| Ckrus | | 18S rRNA | Candida krusei |
| Cpara651 (Cpara) | | 18S rRNA | Candida parapsilosis |
| PF2 | | 18S rRNA | all yeasts |
| Str | | 16S rRNA | Streptococcus spp. |
| Spy | | 16S rRNA | Streptococcus pyogenes |
| Saga | | 16S rRNA | Streptococcus agalactiae |
| Hpy-1 | | 16S rRNA | Helicobacter pylori |
| ClaR1 | | 23S rRNA | clarithromycin resistant Helicobacter pylori |
| ClaR2 | | 23S rRNA | clarithromycin resistant Helicobacter pylori |
| ClaR3 | | 23S rRNA | clarithromycin resistant Helicobacter pylori |
| ClaWT | | 23S rRNA | Helicobacter pylori (clarithromycin sensitve) |
| ATE | | 23S rRNA | Aureobacterium testaceum |
| BKE | | 23S rRNA | Brevibacterium sp. (B. ketoglutamicum) |
| CGL | | 23S rRNA | Corynebacterium glutamicum |
| Pst67 | | 16S rRNA | Pseudomonas stutzeri, P. mendocina |
| Pst997 | | 16S rRNA | Pseudomonas stutzeri |
| Pae997 | | 16S rRNA | Pseudomonas spp. |
| ACI208 | | 16S rRNA | Acidovorax spp. |
| COM1424 | | 16S rRNA | Comamonas spp. |
| Ps | | 23S rRNA | Pseudomonas spp. |
| Ppu | | 23S rRNA | Pseudomonas spp. |
| Pce | | 23S rRNA | Burkholderia spp. |
| Pdi | | 16S rRNA | Brevundimonas (Pseudomonas) diminuta, Caulobacter spp., Mycoplana bullata |
| Cte | | 16S rRNA | Comamonas spp., Acidovorax spp., Hydrogenophaga spp., Aquaspirillum spp. |
| NEU | S-*-Nsm-0651-a-A-18 | 16S rRNA | Most halophilic and halotolerant Nitrosomonas spp. |
| PseaerA | | 16S rRNA | Pseudomonas aeruginosa |
| PseaerA | | 23S rRNA | Pseudomonas aeruginosa |
| Amx1900 | L-*-Amx-1900-a-A-21 | 23S rRNA | anaerobic ammonium-oxidizing bacteria, Candidatus `Brocadia anammoxidansapos and Candidatus `Kuenenia stuttgartiensisapos |
| Kst157 | S-S-Kst-0157-a-A-18 | 16S rRNA | Candidatus Kuenenia stuttgartiensis |
| Ban162 (B. anam.) | S-S-Ban-0162(B. anam.)-a-A-18 | 16S rRNA | Candidatus Brocadia anammoxidans |
| Amx820 | S-*-Amx-0820-a-A-22 | 16S rRNA | anaerobic ammonium-oxidizing bacteria, Candidatus `Brocadia anammoxidansapos and Candidatus `Kuenenia stuttgartiensisapos |
| Syb701 | S-*-MUG28-0701-a-A-20 | 16S rRNA | clone MUG28 |
| GNSB633 | S-*-GNSB-0633-a-A-20 | 16S rRNA | green nonsulfur clones MUG9, TUG8, TUG9, TUG10 |
| DELTA495a | S-C-dProt-0495-a-A-18 | 16S rRNA | Most Deltaproteobacteria and most Gemmatimonadetes |
| DELTA495b | S-*-dProt-0495-b-A-18 | 16S rRNA | some Deltaproteobacteria |
| DELTA495c | S-*-dProt-0495-c-A-18 | 16S rRNA | some Deltaproteobacteria |
| DSB706 | S-*-Dsb-0706-a-A-18 | 16S rRNA | Most Desulfobulbaceae and Thermodesulforhabdus |
| DSM213 | S-G-Dsm-0213-a-A-18 | 16S rRNA | Desulfomicrobium |
| Tdsulfo848 (TDSV849) | S-*-Tdsulfo-0848-a-A-18 (S-*-Tdsv-0849-a-A-18) | 16S rRNA | Most Thermodesulfovibrio and some Magnetobacterium |
| Phasco741 | | 16S rRNA | Phascolarctobacterium faecium, Acidaminococcus fermentans, Succiniclasticum ruminis |
| Veil223 | | 16S rRNA | Veillonella dispar, Veillonella parvula, Veillonella atypica |
| Ehal1469 | | 16S rRNA | Eubacterium hallii, Clostridium herbivorans, Clostridium polysaccharolyticum |
| Lach571 | | 16S rRNA | Lachnospira multipara, Eubacterium eligens, Lachnospira pectinoschiza |
| Ecyl387 | | 16S rRNA | Eubacterium cylindroides, Clostridium innocuum, Eubacterium biforme, Eubacterium tortuosum, Eubacterium dolichum, Streptococcus pleomorphus |
| Rfla729 | S-*-Rfla-0729-a-A-18 | 16S rRNA | Ruminococcus albus, R. flavefaciens |
| Rbro730 | S-*-Rbro-0730-a-A-18 | 16S rRNA | Clostridium sporosphaeroides, Ruminococcus bromii, Clostridium leptum |
| RHC439 | S-*-RHC-0439-a-A-18 | 16S rRNA | Rhodocyclus spp., most member of the Candidatus Accumulibacter cluster, Azospira lineage |
| RHW456 | S-G-Rhw-0456-a-A-18 | 16S rRNA | Bio-P enrichment culture clone R1 |
| RHW991 | S-G-Rhw-0991-a-A-18 | 16S rRNA | Bio-P enrichment culture clone R1 |
| RHX456 | S-G-Rhx-0456-a-A-17 | 16S rRNA | Candidatus Accumulibacter phosphatis (clone R6) |
| RHX991 | S-G-Rhx-0991-a-A-18 | 16S rRNA | Candidatus Accumulibacter phosphatis (clone R6) |
| MG-64 | | 16S rRNA | type I methanotrophs including Methylomonas spp., Methylomicrobium spp., Methylobacter spp., Methylococcus |
| MA-621 | | 16S rRNA | type II methanotrophs including Methylocystis spp., Methylosinus spp. |
| MA-221 | | 16S rRNA | type II methanotrophs including Methylocystis spp., Methylosinus spp. |
| Mc1029 | | 16S rRNA | Methylococcus spp. |
| Chlae-574 | S-F-Chlae-0574-a-A-18 | 16S rRNA | Chlamydiaceae |
| Chla-0232 | S-G-Chla-0232-A-18 | 16S rRNA | Chlamydia |
| Chlph-0583 | S-G-Chlph-0583-a-A-18 | 16S rRNA | Chlamydophila |
| Ct-0623 | S-S-Ct-0623-a-A-18 | 16S rRNA | Chlamydia trachomatis |
| Cpn-0214 | S-S-Cpn-0214-a-A-18 | 16S rRNA | Chlamydophila pneumoniae |
| Cpn-0974 | S-S-Cpn-0974-a-A-18 | 16S rRNA | Chlamydophila pneumoniae |
| Cps-1414 | S-S-Cps-1414-a-A-18 | 16S rRNA | “Chlamydophila psittaci” group including C. felis, C. abortus, and C. caviae |
| Cps-1353 | S-S-Cps-1353-a-A-18 | 16S rRNA | “Chlamydophila psittaci” group including C. felis, C. abortus, and C. caviae |
| Bn9-658 | | 16S rRNA | subgroup of the Parachlamydiaceae including Parachlamydia acanthamoebae (Hallaposs coccus),
endosymbionts of Acanthamoebae sp. UWE25 and UWE1 |
| ParaC-0658 | S-*-ParaC-0658-a-A-18 | 16S rRNA | subgroup of the Parachlamydiaceae including Neochlamydia hartmannellae, endosymbiont of Acanthamoeba sp. UWC22 |
| Ctaenio-998 | S-S-Ctaenio-998-a-A-18 | 16S rRNA | Caedibacter taeniospiralis |
| TM7305 | | 16S rRNA | subdivision 1 of candidate division TM7 |
| TM7905 | | 16S rRNA | candidate division TM7 |
| TM7522 | | 16S rRNA | candidate division TM7 |
| TM7567 | | 16S rRNA | candidate division TM7 |
| CHL 1851 | S-F-t1851-0592-a-A-20 | 16S rRNA | filamentous bacterium Eikelboom Type 1851 |
| Enterbact D | | 16S rRNA | some members of the Enterobacteriaceae |
| Enterbact B | | 16S rRNA | some members of the Enterobacteriaceae and Vibrionaceae |
| ALT1413 | | 16S rRNA | Alteromonas, Colwellia |
| G Rb | | 16S rRNA | Rhodobacter, Roseobacter |
| G V | | 16S rRNA | Vibrio |
| NOR1-56 | | 16S rRNA | NOR1 lineage (Gammaproteobacteria) |
| NOR2-1453 | | 16S rRNA | NOR2 cluster group A (Gammaproteobacteria) |
| OCE232 | | 16S rRNA | Oceanospirillum |
| PSA184 | | 16S rRNA | Pseudoalteromonas, Colwellia |
| SAR86-1249 | | 16S rRNA | SAR 86 cluster |
| SPH120 | | 16S rRNA | Sphingomonas |
| Hypho-1241 | S-G-Hypho-1241-a-A-19 | 16S rRNA | Hyphomicrobium |
| Gam1019 | S-S-g-Prot-1019-a-A-18 | 16S rRNA | phosphate accumulating bacteria (Gammaproteobacteria) |
| Gam1278 | S-S-g-Prot-1278-a-A-20 | 16S rRNA | phosphate accumulating bacteria (Gammaproteobacteria) |
| PAO846 | S-S-Rhodo-0846-a-A-18 | 16S rRNA | Candidatus Accumulibacter phosphatis |
| actino-1011 | S-S-HGC-1011-a-A-19 | 16S rRNA | Tetrasphaera japonica, enhanced biological phosphorus removal clone Ebpr19, Ebpr20 (Actinobacteria) |
| NSR826 | | 16S rRNA | Nitrospira moscoviensis, freshwater Nitrospira spp. |
| NSR1156 | | 16S rRNA | Nitrospira moscoviensis, freshwater Nitrospira spp. |
| NSR447 | | 16S rRNA | Nitrospira spp. |
| MNP1 | | 16S rRNA | nocardioform actinomycetes |
| MLP | | 16S rRNA | Mycobacterium sp. SMKN23, Mycobacterium sp. SMKN22, (nocardioform actinomycetes) |
| DLP | | 16S rRNA | nocardioform actinomycete sp. |
| GLP1 | | 16S rRNA | Gordona sp. SMKN27, Gordona sp. SMKN12, Gordona sp. SMKN17, Gordona sp. SMKN14, (nocardioform actinomycetes) |
| GLP2 | | 16S rRNA | Gordona sp. SMKN29, Gordona sp. SMKN15, (nocardioform actinomycetes) |
| GLP3 | | 16S rRNA | nocardioform actinomycete sp. |
| E.bar1237 | S-S-E.bar-1237-a-A-18 | 16S rRNA | Eubacterium barkeri |
| E.bif462 | S-S-E.bif-0462-a-A-18 | 16S rRNA | Eubacterium biforme |
| E.con1122 | S-S-E.con-1122-a-A-20 | 16S rRNA | Eubacterium contortum |
| E.cyl461 | S-St-E.cyl-0461-a-A-18 | 16S rRNA | Eubacterium cylindroides |
| E.cyl466 | S-St-E.cyl-0466-a-A-18- | 16S rRNA | Eubacterium cylindroides |
| E.dol183 | S-S-E.dol-0183-a-A-18 | 16S rRNA | Eubacterium dolichum |
| E.had579 | S-S-E.had-0579-a-A-20 | 16S rRNA | Eubacterium hadrum (Anaerostipes hadrus) |
| E.len194 | S-S-E.len-0194-a-A-18 | 16S rRNA | Eubacterium lentum |
| E.lim1433 | S-S-E.lim-1433-a-A-18 | 16S rRNA | Eubacterium limosum E. callanderi |
| E.mon84 | S-S-E.mon-0084-a-A-18 | 16S rRNA | Eubacterium moniliforme |
| E.ven66 | S-S-E.ven-0066-a-A-18 | 16S rRNA | Eubacterium ventriosum |
| GSB-532 | S-F-GSB-532-a-A-15 | 16S rRNA | green sulfur bacteria, Chlorobiaceae |
| GSB-822 | S-F-GSB-822-a-A-19 | 16S rRNA | green sulfur bacteria, Chlorobiaceae |
| GNSB-941 | | 16S rRNA | phylum Chloroflexi (green nonsulfur bacteria) |
| CFX1223 | | 16S rRNA | phylum Chloroflexi (green nonsulfur bacteria) |
| CFX109 | | 16S rRNA | some members of the class Chloroflexi |
| CFX784 | | 16S rRNA | some members of the class Anaerolineae |
| EUK1195 | | 18S rRNA | Eukarya |
| Glsc407 | | 18S rRNA | Glaucoma scintillans |
| Glsc413 | | 18S rRNA | Glaucoma scintillans |
| Glsc651 | | 18S rRNA | Glaucoma scintillans |
| Glsc1129 | | 18S rRNA | Glaucoma scintillans |
| R-BT065 | | 16S rRNA | subgroup of Betaproteobacteria |
| R-FL615 | | 16S rRNA | subgroup of Bacteriodetes |
| TGP690 | | 16S rRNA | Pelotomaculum thermopropionicum |
| Pchl454 | | 16S rRNA | Pseudomonas chlororaphis |
| muD1 | | 18S rRNA | Pseudo-Nitzschia multiseries (Bacilliarophyceae) |
| auD1 | | 18S rRNA | Pseudo-Nitzschia australis (Bacilliarophyceae) |
| puD1 | | 18S rRNA | Pseudo-Nitzschia pungens (Bacilliarophyceae) |
| CHLO02 | | 18S rRNA | Chlorophyta |
| CHLO01 | | 18S rRNA | Most Chlorophyta, some Non-Chlorophyta |
| NCHLO01 | | 18S rRNA | Most Non-Chlorophyta, some Chlorophyta (Chromista) |
| PI1 | | 18S rRNA | Paraphysomonas imperforata (Chrysophyceae) |
| PI2 | | 18S rRNA | Paraphysomonas imperforata (Chrysophyceae) |
| PIMP1683 | | 18S rRNA | Paraphysomonas imperforata (Chrysophyceae) |
| PIMP635 | | 18S rRNA | Paraphysomonas imperforata (Chrysophyceae) |
| PIMP635 | | 18S rRNA | Paraphysomonas imperforata (Chrysophyceae) |
| PV1 | | 18S rRNA | Paraphysomonas vestita (Chrysophyceae) |
| PV2 | | 18S rRNA | Paraphysomonas vestita (Chrysophyceae) |
| PV3 | | 18S rRNA | Paraphysomonas vestita (Chrysophyceae) |
| PV4 | | 18S rRNA | Paraphysomonas vestita (Chrysophyceae) |
| PV5 | | 18S rRNA | Paraphysomonas vestita (Chrysophyceae) |
| 405_Pro | | 16S rRNA | Prochlorococcus (Cyanophyceae) |
| 181_ProHLI | | 16S rRNA | Prochlorococcus HLI (Cyanophyceae) |
| 645_ProHLI | | 16S rRNA | Prochlorococcus HLI (Cyanophyceae) |
| 645_ProHLII | | 16S rRNA | Prochlorococcus HLII (Cyanophyceae) |
| 1445_ProNATL | | 16S rRNA | Prochlorococcus LL (Cyanophyceae) |
| 181_ProLL | | 16S rRNA | Prochlorococcus LL (Cyanophyceae) |
| 645_ProLL | | 16S rRNA | Prochlorococcus LL (Cyanophyceae) |
| 405_Syn | | 16S rRNA | Synechococcus (Cyanophyceae) |
| NA1 | | 18S rRNA | Alexandrium tamarense (North America) |
| P.pisc | | 18S rRNA | Pfiesteria piscicida |
| EUK1209 | | 18S rRNA | Eukarya |
| PAO651 (ACCBA651) | S-G-Accba-0651-a-A-18 | 16S rRNA | Most members of the Candidatus Accumulibacter cluster |
| GAOQ431 | | 16S rRNA | Candidatus Competibacter phosphatis |
| GAOQ989 | | 16S rRNA | Candidatus Competibacter phosphatis |
| ACAC | | 16S rRNA | Actinobacillus actinomycetemcomitans |
| B(T)AFO | | 16S rRNA | Tannerella forsythensis (Bacteroides forsythus) |
| POGI | | 16S rRNA | Porphyromonas gingivalis |
| PRIN | | 16S rRNA | Prevotella intermedia |
| FUSO | | 16S rRNA | Fusobacterium spp. |
| VEPA | | 16S rRNA | Veillonella parvula |
| CREN512 | | 16S rRNA | most Crenarchaeota |
| CREN569 | | 16S rRNA | most environmental Crenarchaeota |
| EURY496 | | 16S rRNA | Methanomicrobiales group and VAL 47, VAL 1, VAL9, VAL78 clones |
| EURY499 | | 16S rRNA | Methanosarcina, Methanosaeta, Methanomicrobiales groups and VAL 47,VAL 1, VAL9, VAL78 clones |
| EURY514 | | 16S rRNA | most Euryarchaeota |
| Cap1428 | | 16S rRNA | Candidatus capitivii acidiprotistae |
| EUKb1193 | | 18S rRNA | nearly all Eukarya |
| EUKb503 | | 18S rRNA | nearly all Eukarya |
| EUKb310 | | 18S rRNA | nearly all Eukarya |
| LKC59 | S-*-eProt-0059-a-A-18 | 16S rRNA | Epsilonproteobacterial group I from Lower Kane Cave |
| LKC1006 | S-*-eProt-1006-a-A-18 | 16S rRNA | Epsilonproteobacterial group II from Lower Kane Cave |
| HHY | | 16S rRNA | Haliscomenobacter hydrossis |
| TNI | | 16S rRNA | Thiothrix nivea |
| LMU | | 16S rRNA | Leucothrix mucor |
| 21N | | 16S rRNA | Eikelboom type 021N strain II-26 |
| LDI | | 16S rRNA | Leptothrix discophora |
| SNA | | 16S rRNA | Sphaerotilus natans |
| Hp16S-1 | | 16S rRNA | Helicobacter pylori |
| beta-572 | | 16S rRNA | Candidatus Snodgrassella alvi or Beta (symbiotic Neisseriaceae phylotype in honey bee) |
| OalgGAM445 | | 16S rRNA | Gammaproteobacterial, sulfur-oxidizing symbiont of Olavius algarvensis |
| OalgDEL136 | | 16S rRNA | Deltaproteobacterial symbiont of Olavius algarvensis |
| I. leu. (IleuSYM581) | | 16S rRNA | Gammaproteobacterial symbiont of Inanidrilus leukodermatus |
| O. tan. (OtanSYM581) | | 16S rRNA | Gammaproteobacterial symbiont of Olavius tantalus |
| PRYM02 | | 18S rRNA | Prymnesiophyceae |
| PTB-6-7/1030 | | 16S rRNA | PTB 6/7 cluster |
| PTB-6-7/997 | | 16S rRNA | PTB 6/7 cluster |
| PTB-1/482 | | 16S rRNA | PTB 1 cluster, Stappia stellulata, bacterium (AB010864) |
| PTB-1/1014 | | 16S rRNA | PTB 1 cluster, Stappia stellulata |
| PTB-all/646 | | 16S rRNA | Alphaproteobacterial clade (all PTB) |
| PELA02 | | 18S rRNA | Pelagophyceae clade containing Aureococcus, Pelagomonas, Pulvinaria, CCMP 1395 |
| PELA01 | | 18S rRNA | Pelagophyceae |
| PAO462 | | 16S rRNA | Candidatus Accumulibacter phosphatis |
| ALBO577 | | 16S rRNA | Alcaligenes, Bordetella and close relatives |
| DEV677 | | 16S rRNA | Devosia riboflavina and relatives |
| ENT183 | | 16S rRNA | Enterobacteriaceae |
| FLX101 | | 16S rRNA | Flavobacterium ferrugineum, Flexibacter elegans, F. sancti |
| MET1217 | | 16S rRNA | Methylophilus |
| NEV817 | | 16S rRNA | Nevskia ramosa and relatives |
| PED672 | | 16S rRNA | Pedobacter heparinus and relatives |
| SPH492 | | 16S rRNA | Sphingomonas, Erythrobacter |
| Ecras651 | | 18S rRNA | Euplotes crassus |
| Ecras1246 | | 18S rRNA | Euplotes crassus |
| Evan651 | | 18S rRNA | Euplotes vannus |
| Emin619 | | 18S rRNA | Euplotes minuta |
| Emin651 | | 18S rRNA | Euplotes minuta |
| PNA | | 18S rRNA | Macrorhabdus ornithogaster |
| Mcaps-1032 | | 16S rRNA | Methylocapsa acidiphila |
| Msint-1268 | | 16S rRNA | Methylosinus trichosporium |
| Msins-647 | | 16S rRNA | Methylosinus sporium |
| Mcyst-1432 | | 16S rRNA | Methylocystis |
| Mcyst-1261 | | 16S rRNA | peat-inhabiting subgroup of Methylocystis spp. |
| Cluster6a192 (6a192) | S-*-Nsm6a-0192-a-A-20 | 16S rRNA | Nitrosomonas oligotropha lineage (Cluster 6a) |
| PBR2 | S-S-Pbr2-0182-a-A-19 | 16S rRNA | Bifidobacterium breve |
| EBAC1790 | S-*-EBAC-1790-a-A-18 | 23S rRNA | Enterobacteriaceae |
| Ntspa685 | S-G-Ntspa-0685-a-A-22 | 16S rRNA | Nitrospira moscoviensis, Nitrospira marina and 710-9 clone |
| Myc657 | S-*-Myc-0657-a-A-16 | 16S rRNA | Mycobacterium subdivision (mycolic acid-containing actinomycetes) |
| Hpy16S | | 16S rRNA | Helicobacter pylori |
| COR653 | S-*-Cor-0653-a-A-18 | 16S rRNA | Coriobacterium group (Coriobacterium and Collinsella) |
| ATO291 | S-*-Ato-0291-a-A-17 | 16S rRNA | Atopobium cluster |
| Nscry1004 | S-*-Nscry-1004-a-A-19 | 16S rRNA | Nitrosomonas cryotolerans |
| Nscoc65 | S-*-Nscoc-65-a-A-18 | 16S rRNA | Nitrosococcus oceani, Nitrosococcus halophilus |
| Nscoc1248 | S-*-Nscoc-1248-a-A-18 | 16S rRNA | Nitrosococcus oceani, Nitrosococcus halophilus |
| Dhe1259t | | 16S rRNA | some Dehalococcoides spp. |
| Dhe1259c | | 16S rRNA | some Dehalococcoides spp. |
| Sca1309 | S-G-Sca-1309-a-A-21 | 16S rRNA | genus Candidatus Scalindua |
| Scabr1114 | S-*-Scabr-1114-a-A-22 | 16S rRNA | Candidatus Scalidua brodae |
| Amx368 | S-*-Amx-0368-a-A-18 | 16S rRNA | all ANAMMOX bacteria |
| BS820 | S-*-BS-820-a-A-22 | 16S rRNA | Candidatus Scalidua wagneri, Candidatus Scalidua sorokinii |
| NSMR76 | | 16S rRNA | Nitrosomonas marina-like ammonia-oxidizing bacteria |
| NSMR34 | | 16S rRNA | Nitrosospira tenius-like ammonia-oxidizing bacteria |
| Nmo218 | | 16S rRNA | Nitrosomonas oligotropha-lineage |
| Bfra602 | S-*-Bfra-0602-a-A-19 | 16S rRNA | Bacteroides fragilis group |
| Bdis656 | S-*-Bdis-0656-a-A-18 | 16S rRNA | Bacteroides distasonis |
| Clit135 | S-*-Clit-0135-a-A-19 | 16S rRNA | some of the Clostridium lituseburense group (Clostridium cluster XI) |
| Chis150 | S-*-Chis-0150-a-A-23 | 16S rRNA | most of the Clostridium histolyticum group (Clostridium cluster I and II) |
| Erec482 | S-*-Erec-0482-a-A-19 | 16S rRNA | most of the Clostridium coccoides-Eubacterium rectale group (Clostridium cluster XIVa and XIVb) |
| Strc493 | S-*-Strc-0493-a-A-19 | 16S rRNA | most Streptococcus spp. and some Lactococcus spp. |
| GB | | 16S rRNA | novel gammaproteobacterial group |
| GB_G1 (GAOQ989) | | 16S rRNA | novel gammaproteobacterial group |
| GB_G2 | | 16S rRNA | novel gammaproteobacterial group |
| GB_4 | | 16S rRNA | novel gammaproteobacterial group |
| GB_6 (Gam1019) | | 16S rRNA | novel gammaproteobacterial group |
| GB_7 | | 16S rRNA | novel gammaproteobacterial group |
| CFB560 | | 16S rRNA | subgroup of Bacteroidetes |
| CFB562 | | 16S rRNA | subgroup of Bacteroidetes |
| CFB376 | | 16S rRNA | subgroup of Bacteroidetes |
| Lis-637 | | 16S rRNA | Listeria spp., except L. grayi |
| Mka220 | | 16S rRNA | subgroup of Bacteroidetes |
| Mkb221 | | 16S rRNA | subgroup of Bacteroidetes |
| Mkc219 | | 16S rRNA | subgroup of Bacteroidetes |
| Mkd1111 | | 16S rRNA | subgroup of Bacteroidetes |
| SGR220 | | 16S rRNA | Saprospira grandis |
| SGR1200 | | 16S rRNA | Saprospira grandis and relatives |
| SGR1425 | | 16S rRNA | Saprospira grandis and relatives |
| Bak655 | | 16S rRNA | Candidatus Magnospira bakii |
| Bak1408 | | 16S rRNA | Candidatus Magnospira bakii |
| ARC94 | | 16S rRNA | Arcobacter |
| ARC1430 | | 16S rRNA | Arcobacter |
| ACA652b | | 16S rRNA | some unknown Acinetobacter-like species |
| T25-1028 | | 16S rRNA | clone T25 and T19 of a subgroup within the Betaproteobacteria |
| T25-220 | | 16S rRNA | clone T25 and other clones of a subgroup within the Betaproteobacteria, not clone T19 |
| T28-649 | | 16S rRNA | clone T28 and T29 of a subgroup within the Alphaproteobacteria, Sphingomonas capsulata |
| T28-1435 | | 16S rRNA | clone T28 and T29 of a subgroup within the Alphaproteobacteria |
| GAM42_C1033 | | 23S rRNA | currently unknown |
| Lbrev | | 16S rRNA | Lactobacillus brevis |
| Lcoll | | 16S rRNA | Lactobacillus collinoides |
| Lcory | | 16S rRNA | Lactobacillus coryniformis |
| Lfarc | | 16S rRNA | Lactobacillus farciminis |
| Lhilg | | 16S rRNA | Lactobacillus hilgardii |
| Lmali | | 16S rRNA | Lactobacillus mali |
| Lpara | | 16S rRNA | Lactobacillus casei, Lactobacillus paracasei |
| Lzeae | | 16S rRNA | Lactobacillus zeae, Lactobacillus casei |
| Ooeni | | 16S rRNA | Oenococcus oeni |
| Pdamn | | 16S rRNA | Pediococcus damnosus |
| Pparv | | 16S rRNA | Pediococcus parvulus |
| Urobe63a | S-*-Urobe-0063-a-A-20 | 16S rRNA | uncultured Ruminococcus obeum-like bacteria |
| Urobe63b | S-*-Urobe-0063-b-A-20 | 16S rRNA | uncultured Ruminococcus obeum-like bacteria |
| CFX1238 | | 16S rRNA | Chloroflexus |
| RFX1238 | | 16S rRNA | Roseiflexus assemblage |
| Pchl454 | | 16S rRNA | Pseudomonas chlororaphis |
| b91 | | 16S rRNA | mealybug betaproteobacterial endosymbionts |
| b162 | | 16S rRNA | mealybug betaproteobacterial endosymbionts |
| b886 | | 16S rRNA | mealybug betaproteobacterial endosymbionts |
| b1273 | | 16S rRNA | mealybug betaproteobacterial endosymbionts |
| g80 | | 16S rRNA | secondary endosymbiont of Planococcus citri |
| g458 | | 16S rRNA | secondary endosymbiont of Planococcus citri |
| g630 | | 16S rRNA | secondary endosymbiont of Planococcus citri |
| g1273 | | 16S rRNA | secondary endosymbiont of Planococcus citri |
| NLIMI 91 | S-G-N.limI-0091-a-A-18 | 16S rRNA | Nostocoida limicola I |
| NLIMII 175 | S-S-N.limII-0175-a-A-18 | 16S rRNA | Nostocoida limicola II strains except strain Ben 70 |
| NLIMII 192 | S-S-N.limII-0192-a-A-18 | 16S rRNA | Nostocoida limicola II strain Ben 70 |
| NLIMIII 301 | S-S-N.limIII-0301-a-A-18 | 16S rRNA | Nostocoida limicola III strains |
| NLIMIII 729 | S-S-N.limIII-0729-a-A-18 | 16S rRNA | Nostocoida limicola III strain Ben 220 |
| NLIMIII 830 | S-S-N.limIII-0830-a-A-18 | 16S rRNA | Nostocoida limicola III strains except Ben 220 |
| Bmy843 | S-*-Bmy-0843-a-A-18 | 16S rRNA | Bacillus |
| Ver620 | S-*-Ver-0620-a-A-18 | 16S rRNA | Verrucomicrobium |
| MIB661 | S-S-Bacm-0661-a-A-18 | 16S rRNA | mouse intestinal bacteria |
| MIB724 | S-S-Bacm-0724-a-A-18 | 16S rRNA | mouse intestinal bacteria |
| LGC | | 16S rRNA | Firmicutes (low G+C Gram-positives) |
| Clost I | | 16S rRNA | subgroup of Clostridia cluster I and II |
| AW | | 16S rRNA | some Acetobacterium species, E. limosum |
| DSV (DSV321) | | 16S rRNA | Some Desulfovibrionaceae, Desulfomicrobiaceae, Desulfohalobiaceae, and other Bacteria |
| AMAR 839 | S-G-AMAR-0839-a-A-22 | 16S rRNA | Amaricoccus spp. |
| RSOLA | | 23S rRNA | Ralstonia solanacearum, Ralstonia syzygii, blood disease bacterium (BLDB) |
| RSOLB | | 23S rRNA | Ralstonia solanacearum, Ralstonia syzygii, blood disease bacterium (BLDB) |
| TTI-732 | | 16S rRNA | Treponema cluster I |
| Dev1-486 | | 16S rRNA | ectosymbiotic spirochetes on Devescovina sp. and Stephanonympha sp. |
| Dev14-486 | | 16S rRNA | ectosymbiotic spirochetes on Devescovina sp. and Stephanonympha sp. |
| Dev14-Tp652 | | 16S rRNA | ectosymbiotic spirochetes on Devescovina sp. and Stephanonympha sp. |
| Oxy8-Tp444 | | 16S rRNA | ectosymbiotic spirochetes on Oxymonas sp. and Stephanonympha sp. |
| Oxy26-Tp1281 | | 16S rRNA | ectosymbiotic spirochetes on Oxymonas sp. and Stephanonympha sp. |
| Doh299 | | 18S rRNA | AMD Dothideomycete fungi |
| Eur1108 | | 18S rRNA | Eurotiomycetes, including AMD fungi |
| Oil845 | | 18S rRNA | AMD Dothideomycete fungi |
| AcRic90 | S-*-AcEnd-0090-a-A-18 | 16S rRNA | Rickettsia-related endosymbionts of Acanthamoeba strains UWC8 and UWC36 |
| AcRic1196 | S-*-AcEnd-1196-a-A-18 | 16S rRNA | Rickettsia-related endosymbionts of Acanthamoeba strains UWC8 and UWC36 |
| MPH-730 | | 16S rRNA | Methylophaga |
| MPHm-994 | | 16S rRNA | Methylophaga marina |
| REX72 | | 16S rRNA | Bacillus |
| LGC353b | | 16S rRNA | Bacillus |
| Aph1180 | S-G-Aph-1180-a-A-18 | 16S rRNA | Candidatus Amoebophilus asiaticus |
| Rhabdo | S-S-RhaC-0992-a-A | 16S rRNA | Candidatus Rhabdochlamydia porcellionis |
| SBR9-1a | S-D-s91a-0578-b-A-20 | 16S rRNA | Alphaproteobacterial SBR9 clone 1 (AY254694) |
| SBR9-1b | S-D-s91a-0778-b-A-18 | 16S rRNA | Alphaproteobacterial SBR9 clone 1 (AY254694) |
| PAG59 | S-G-Pan-0059-a-A-18 | 16S rRNA | Pantoea spp. |
| Apur453 | S-S-Lpcpur-0453-a-A-26 | 16S rRNA | Lamprocystis purpurea (DSM4197), strain A12 3 and clone 345, Lake Cadagno. |
| Cmok453 | S-S-Chrok-0453-a-A-26 | 16S rRNA | Chromatium okenii (DSM169) and clone 359, Lake Cadagno. |
| Laro453 | S-S-Lpcro-0453-a-A-26 | 16S rRNA | Lamprocystis roseopersicina (DSM229) and clone 136, Lake Cadagno |
| S453D | S-*-Lpc-0453-a-A-26 | 16S rRNA | Lamprocystis-related bacteria (strain D21 and clone 261, Lake Cadagno) |
| S453F | S-*-Lpc-0453-b-A-26 | 16S rRNA | Lamprocystis - related bacteria (clones 335, 371 and strain cad16, Lake Cadagno) |
| DSC213 | S-S-Dscthz-0213-a-A-18 | 16S rRNA | Desulfocapsa thiozymogenes |
| DSC441 | S-*-Dsc-0441-a-A-19 | 16S rRNA | Few Desulfocapsa |
| S453H | S-*-Tcs-0453-a-A-26 | 16S rRNA | Thiocystis minor-related bacteria (clones 222, 13 and strain H1.1, Lake Cadagno) |
| S448 | S-*-Tcs-0448-a-A-21 | 16S rRNA | Thiocystis gelatinosa-related bacteria (clone 130 and strain 448.10, Lake Cadagno) |
| SRB441 | | 16S rRNA | Few Desulfobulbaceae |
| DsmA455 | S-*-Dmn-0455-a-A-26 | 16S rRNA | Desulfomonile-related Lake Cadagno clones 618, 624, 626, and 651 |
| DsmB455 | S-*-Dmn-0455-b-A-26 | 16S rRNA | Desulfomonile-related Lake Cadagno clone 650 |
| Chlp441 | S-S-Chlphb-0441-a-A-23 | 16S rRNA | Chlorobium phaeobacteroides (DSM 266), strain 1VIID7 and clone 366 Lake Cadagno. |
| Chlc190 | S-S-Chlctf-0190-a-A-22 | 16S rRNA | Chlorobium clathratiforme (DSM 5477), strain 4DE and clones 810, 827, 849 Lake Cadagno. |
| UV7-763 | S-St-UV7-763-a-A-18 | 16S rRNA | Parachlamydia sp. UV-7 |
| TG1-Ta-Rsa | S-S-E.tri-1023-a-A-20 | 16S rRNA | Candidatus Endomicrobium trichonymphae |
| TG1-Pv-Rsa | S-S-E.pyr-1023-a-A-20 | 16S rRNA | Candidatus Endomicrobium pyrsonymphae |
| Arglo32 | S-O-Arglo-0032-a-A-20 | 16S rRNA | Archaeoglobales |
| Aqui1197 | S-O-Aqui-1197-a-A-20 | 16S rRNA | Aquificales |
| Tcoc164 | S-O-Tcoc-0164-a-A-20 | 16S rRNA | Thermococcales |
| APL637 | | 16S rRNA | Aplasma, acid mine drainage Thermoplasmatales |
| GPL642 | | 16S rRNA | Gplasma, acid mine drainage Thermoplasmatales |
| TPL759 | | 16S rRNA | Tplasma, Thermoplasma spp. |
| BPL830 | | 16S rRNA | Bplasma, acid mine drainage Thermoplasmatales |
| Meiot836 | | 16S rRNA | Meiothermus sp. |
| Proca438 | S-G-Proca-0438-a-A-18 | 16S rRNA | Candidatus Procabacter sp. |
| MB311 | | 16S rRNA | Methanobacteriales |
| MB1174 | | 16S rRNA | Methanobacteriales (minus Methanothermus) |
| MC504 | | 16S rRNA | Methanocaldococcaceae(+some Methanococcaceae) |
| MC1109 | | 16S rRNA | Methanococcaceae |
| MG1200b | | 16S rRNA | most Methanomicrobiales |
| MS821 | | 16S rRNA | Methanosarcina |
| MS1414 | | 16S rRNA | Methanosarcina, Methanococcoides, Methanolobus |
| MSMX860 | | 16S rRNA | Methanosarcinales (all Methanosarcina and Methanosaeta) |
| MX825 | | 16S rRNA | some Methanosaetaceae |
| MX825b | | 16S rRNA | Methanosaetaceae subgroup |
| MX825c | | 16S rRNA | Methanosaetaceae subgroup |
| MX1361 | | 16S rRNA | Methanosaetaceae |
| HEL274 | | 16S rRNA | Helicobacter sp., Wolinella sp. |
| HEL717 | | 16S rRNA | Helicobacter sp., Wolinella sp. |
| HEP642 | | 16S rRNA | Helicobacter hepaticus |
| GAN1237 | | 16S rRNA | Helicobacter ganmani |
| CTE998-1015 | | 16S rRNA | Collimonas sp. |
| ZNS1439 | S-*-Znsym-1439-a-A-20 | 16S rRNA | Zoothamnium niveum ectosymbiont |
| ZNS196 | S-*-Znsym-0196-a-A-19 | 16S rRNA | Zoothamnium niveum ectosymbiont |
| MPA | | 16S rRNA | Candidatus Microthrix |
| PPx3-1428 | | 16S rRNA | Candidatus Alysiomicrobium bavaricum |
| Noli-644 | | 16S rRNA | Candidatus Alysiosphaera europaea |
| Sita-649 | | 16S rRNA | Candidatus Sphaeronema italicum |
| Combo-1031 | | 16S rRNA | Candidatus Combothrix italica |
| Cate-1013 | | 16S rRNA | Candidatus Catenimonas italica |
| MZ1 | | 16S rRNA | Thauera spp. mzt1t |
| GAM42a_T1038_G1031 | | 23S rRNA | Representatives of the Xanthomonas group |
| GAM42a_T1038 | | 23S rRNA | Representatives of the Xanthomonas group |
| GAM42a_A1041_A1040 | | 23S rRNA | Representatives of the Xanthomonas group and the Alphaproteobacteria, Brevundimonas diminuta |
| Cren537 | | 16S rRNA | Crenarchaea |
| Eury806 | | 16S rRNA | Euryarchaea |
| PnecABCD-445 | | 16S rRNA | Polynucleobacter cluster |
| Actino-221 | S-S-Actino-221-a-A-18 | 16S rRNA | Actinobacterial PAO |
| Actino-658 | S-S-Actino-658-a-A-18 | 16S rRNA | Actinobacterial PAO |
| Ih820 | S-*-Ih820-0820-a-A-18 | 16S rRNA | Desulfotomaculum subcluster Ih (Pelotomaculum and Cryptanaerobacter) |
| ProCo1264 | S-*-ProCo-1264-a-A-23 | 16S rRNA | Ruminococcus productus and relatives |
| Csac67 | S-S-Csac-67-a-A-20 | 16S rRNA | Clostridium saccharogumia |
| Betthio1001 | L-G-bThiob-1001-a-A-21 | 23S rRNA | Betaproteobacterial Thiobacilli |
| Creno445 | S-S-Cpoly-445-a-A-18 | 16S rRNA | Crenothrix polyspora |
| Cp653-A | | 16S rRNA | Crenothrix polyspora sequence cluster I |
| Cp653-B | | 16S rRNA | Crenothrix polyspora sequence cluster II-IV |
| Cp1130-A | | 16S rRNA | Crenothrix polyspora sequence cluster I-II |
| Cp1130-B | | 16S rRNA | Crenothrix polyspora sequence cluster III-IV |
| VIB572a | | 16S rRNA | Genus Vibrio |
| PSU730 | | 16S rRNA | Genus Pseudoalteromonas |
| SHEW227 | | 16S rRNA | Genus Shewanella |
| MX825b | | 16S rRNA | Methanosaetaceae subgroup |
| MX825c | | 16S rRNA | Methanosaetaceae subgroup |
| MX1361 | | 16S rRNA | Methanosaetaceae |
| MG1200b | | 16S rRNA | most Methanomicrobiales |
| MB311 | | 16S rRNA | Methanobacteriales |
| MC504 | | 16S rRNA | Methanocaldococcaceae |
| CST440 | | 16S rRNA | Group 1 clones (AC044 and AC051), closely related to Clostridium stercorarium |
| CTH1258 | | 16S rRNA | Group 2 clones (AC020 and AC033), closely related to Clostridium thermocellum |
| CUE1240 | | 16S rRNA | Group 3 clones (AC014 and AC036), closely related to Clostridium sp. strain XB90 |
| CUE647 | | 16S rRNA | Group 4 clones (AC007 and AC039) |
| BCE182 | | 16S rRNA | Group 5 clones (AC065 and MC049), closely related to Bacteroides
cellulosolvens |
| DEF988 | S-S-Bact-1020-a-A-22 | 16S rRNA | Defluvicoccus vanus-related organisms, cluster 2 |
| FMR0732 | | 16S rRNA | some iron-oxidising acidophilic Actinobacteria and some
acid mine drainage clones |
| ABl0199 | | 16S rRNA | some acidophilic Acidobacteriaceae and an acid mine
drainage clone |
| ABl1002 | | 16S rRNA | some acidophilic Acidobacteriaceae |
| TM1G0138 | | 16S rRNA | Group 1 Thiomonas species |
| TM2G0138 | | 16S rRNA | Group 2 Thiomonas species |
| WJ20646 | | 16S rRNA | acidophilic gamma-Proteobacteria WJ2 and PK51 and some acid mine drainage clones |
| GALTS0084 | | 16S rRNA | acid mine drainage clones related to Gallionella ferruginea |
| BSC0459 | | 16S rRNA | acid mine drainage beta-proteobacterial clones |
| LGC0355 | | 16S rRNA | Firmicutes (Low G+C gram-positive bacteria) |
| ATT0223 | | 16S rRNA | Acidithiobacillus thiooxidans |
| Ntspa1431 | S-*-Ntspa-1431-a-A-18 | 16S rRNA | Sublineage I of the genus Nitrospira |
| Ntspa1151 | S-*-Ntspa-1151-a-A-20 | 16S rRNA | Sublineage II of the genus Nitrospira |
| Apr820 | S-*-Apr-0820-a-A-21 | 16S rRNA | Cand. “Anammoxoglobus propionicus” |
| E2d21002 | S-*-Rhob-1002-a-A-18 | 16S rRNA | some Rhodobacteraceae |
| E1e3 1150 | S-*-Ualp-1150-a-A-18 | 16S rRNA | some unclassified Alphaproteobacteria |
| Ualp-1109 | S-*-Ualp-1109-a-A-18 | 16S rRNA | some unclassified Alphaproteobacteria |
| Sphm-0742 | S-*-Sphm-0742-a-A-18 | 16S rRNA | some Sphingomonadales |
| Bete-1250 | S-*-Bete-1250-a-A-18 | 16S rRNA | some unclassified Bacteroidetes |
| Bete-1419 | S-*-Bete-1419-a-A-18 | 16S rRNA | some unclassified Bacteroidetes |
| Chro-1137 | S-*-Chro-1137-a-A-18 | 16S rRNA | some Chromatiales |
| Caul-1262 | S-*-Caul-1262-a-A-18 | 16S rRNA | some Caulobacterales |
| Ubac-1430 | S-*-Ubac-1430-a-A-18 | 16S rRNA | some unclassified Bacteria |
| Ubac-1241 | S-*-Ubac-1241-a-A-18 | 16S rRNA | some unclassified Bacteria |
| uBet-0984 | S-*-uBet-0984-a-A-18 | 16S rRNA | some unclassified Betaproteobacteria |
| Ubet-0834 | S-*-Ubet-0834-a-A-18 | 16S rRNA | some unclassified Betaproteobacteria |
| Ubet-0990 | S-*-Ubet-0990-a-A-21 | 16S rRNA | some unclassified Betaproteobacteria |
| Rhoc-0998 | S-*-Rhoc-0998-a-A-18 | 16S rRNA | some Rhodocyclaceae |
| Rhoc-1425 | S-*-Rhoc-1425-a-A-18 | 16S rRNA | some unclassified Rhodocyclaceae |
| Thio-1032 | S-*-Thio-1032-a-A-18 | 16S rRNA | some Thiobacillus and some unclassified Betaproteobacteria |
| Ach-221 | | 16S rRNA | Achromobacter xylosoxidans |
| Alc-476 | | 16S rRNA | Alcaligenes faecalis |
| Flavo1004 | S-St-Iso8-1004-a-A-18 | 16S rRNA | Flavobacterium isolate 8 |
| CLOBU1022 | S-S-Cl.bu.-1022-a-A-18 | 16S rRNA | Clostridium butyricum, Elbe `river snowapos isolates 9.1, 9.2, 9.4 |
| AERO1244 | S-G-Aero-1244-a-A-21 | 16S rRNA | Aeromonadaceae |
| Ppu646 | S-G-Ppu-0646-a-A-18 | 16S rRNA | Pseudomonas spp. |
| AcI-840-1 (AC840a) | | 16S rRNA | Subgroup of acI lineage (Actinobacteria) |
| AcI-840-2 (AC840b) | | 16S rRNA | Subgroup of acI lineage (Actinobacteria) |
| AcI-1214 | | 16S rRNA | acI lineage of limnic Actinobacteria |
| DEN67 | | 16S rRNA | Methanol-utilizing denitrifying cluster |
| DEN124 | | 16S rRNA | Acetate-denitrifying cluster |
| DEN581 | | 16S rRNA | Acetate-denitrifying cluster |
| CteA | S-S-Cte-0462-a-A-20 | 16S rRNA | Comamonas testosteroni |
| Nm143-446-1 | | 16S rRNA | Nitrosomonas sp. Nm143-related clones |
| Nm143-446-2 | | 16S rRNA | Nitrosomonas sp. Nm143-related clones |
| Nspmar62 | | 16S rRNA | Nitrospira marina-related clones |
| Nmar831 | | 16S rRNA | Nitrosomonas marina-related clones |
| DSS449 | | 16S rRNA | Some Desulfosarcina |
| DSS138 | | 16S rRNA | Few Desulfobacteraceae |
| DSR1256 | | 16S rRNA | Few Desulfobulbaceae |
| Dblb1243 | | 16S rRNA | Desulfobacterium catecholicum-related strains LacK1, LacK4 and LacK9 |
| Dcap1031 | | 16S rRNA | Few Desulfocapsa including strain LacK10 |
| Dblb1032 | | 16S rRNA | Desulfobacterium catecholicum and related strains LacK1 and LacK9 |
| Dsr186 | | 16S rRNA | Desulfobacterium catecholicum and related strains LacK1 and LacK9 |
| DSV185 | | 16S rRNA | Desulfovibrio acrylicus |
| DSV445 | | 16S rRNA | Desulfovibrio strain EtOHK3 |
| DSV64 | | 16S rRNA | Desulfovibrio strain EtOHK2 |
| OcraDEL1 | | 16S rRNA | Deltaproteobacterial symbiont 1 of Olavius crassitunicatus |
| OcraDEL2 | | 16S rRNA | Deltaproteobacterial symbiont 2 of Olavius crassitunicatus |
| OcraDEL3 | | 16S rRNA | Deltaproteobacterial symbiont 3 of Olavius crassitunicatus |
| DSBAC357 | | 16S rRNA | Most Desulfobacteraceae and Syntrophobacteraceae |
| EPSY549 | S-C-eProt-0549-a-A-18 | 16S rRNA | Epsilonproteobacteria |
| MB | | 16S rRNA | Methylobacterium |
| PS5 | | 16S rRNA | Pseudomonas synxantha and related species of the Pseudomonas fluorescens subgroup |
| E11 | | 16S rRNA | Eubacteria |
| Nost993 | S-*-Nost-993-a-A-18 | 16S rRNA | Filamentous Alphaproteobacteria |
| PPx1002 | S-*-PPx-1002-a-A-18 | 16S rRNA | Filamentous Alphaproteobacteria |
| EU25-1238 | S-*-EU25-1238-a-A-20 | 16S rRNA | Filamentous Chloroflexi |
| Cribseq | S-S-Crib-0064-a-A-20 | 16S rRNA | Criblamydia sequanensis |
| DSV827 | | 16S rRNA | members of the genus Desulfovibrio |
| DSBA1017 | | 16S rRNA | Desulfobacca acetoxidans |
| Pint649 | S-S-P.int-0649-a-A-19 | 16S rRNA | Prevotella intermedia |
| Pnig657 | S-S-P.nig-0657-a-A-19 | 16S rRNA | Prevotella nigrescens |
| Pden654 | S-S-P.den-0654-a-A-19 | 16S rRNA | Prevotella denticola |
| FUS664 | S-G-Fuso-0664-a-A-19 | 16S rRNA | most Fusobacterium sp. |
| SAR92_627 | | 16S rRNA | SAR92 clade |
| TBD1419 | S-S-Tb.den-1419-a-A-18 | 16S rRNA | Thiobacillus denitrificans |
| TBD121 | S-*-Tbdt-0121-a-A-18 | 16S rRNA | Thiobacillus denitrificans and Thiobacillus thioparus |
| TMD131 | S-S-Tm.den-0131-a-A-18 | 16S rRNA | Thiomicrospira denitrificans |
| RHGA702 | S-S-Nsgar-702-a-A-18 | 16S rRNA | “Candidatus Nitrososphaera gargensis” |
| Tbm1282 | S-G-Tbm-1282-a-A-18 | 16S rRNA | most of Thermoanaerobacterium sp. |
| Tbmthsacc184 | S-S-Tbmthsacc-0184-a-A-18 | 16S rRNA | Thermoanaerobacterium thermosaccharolyticum |
| Ccs432 | S-G-Ccs-0432-a-A-18 | 16S rRNA | most of Caldicellulosiruptor sp. |
| TG1End1023T1 | | 16S rRNA | Endomicrobia phylotypes ZnTc-1, HsTc-1, RsTG1 |
| TG1-TriG1-Hsj | | 16S rRNA | Endomicrobia HsTc-1 |
| TG1-Joe-Kf | | 16S rRNA | Endomicrobia phylotype KfJe-1 |
| TG1-Dev-Nca | | 16S rRNA | Endomicrobia phylotype NcDv-1 |
| Flg-Dine-Hsj | | 18S rRNA | Dinenympha sp. HsDnA |
| Flg-Tricho1-Hsj | | 18S rRNA | Trichonympha sp. HsTcA |
| Flg-Joe-Kfl | | 18S rRNA | Joenia sp. KfJeA of K. flavicollis |
| ACIDO228 | | 16S rRNA | Acidobacteria subdivision 1 |
| Bfu613 | | 16S rRNA | Candidatus “Brocadia fulgida” |
| Oilv/OcraGAM1 | | 16S rRNA | Olavius ilvae / O. crassitunicatus Gamma 1 symbiont |
| Oalg/OilvGAM3 | | 16S rRNA | Olavius algarvensis / O. ilvae Gamma 3 symbionts |
| OilvDEL1 | | 16S rRNA | Olavius ilvae Delta 1 symbiont |
| Oalg/OilvDEL3 | | 16S rRNA | Olavius algarvensis/ O. ilvae Delta 3 symbiont |
| OalgDEL4 | | 16S rRNA | Olavius algarvensis Delta 4 symbiont |
| SPIRO | | 16S rRNA | Olavius algarvensis / O. crassitunicatus /O. loisae spirochete symbionts |
| tios_434 | S-G-Tios-0434-a-A-20 | 16S rRNA | cluster TIOS44 |
| HHY-T5 | S-*-Hhy-T5-654-a-A-18 | 16S rRNA | Clone T5, micromanipulated from sludge |
| HHY-654 | S-*-Hhy-654-a-A-18 | 16S rRNA | several Haliscomenobacter species among others the type strain and an isolate named Plant1 Iso10B |
| hspec925 | | 16S rRNA | Candidatus Paraholospora nucleivisitans |
| GNS934 | | 16S rRNA | Chloroflexi sponge cluster I |
| POR1130 | | 16S rRNA | Candidate phylum “Poribacteria” |
| POR389 | | 16S rRNA | Candidate phylum “Poribacteria” |
| POR600 | | 16S rRNA | Candidate phylum “Poribacteria” |
| DSV119 | | 16S rRNA | Desulfovibrio strain L3 |
| DSV139 | | 16S rRNA | Desulfovibrio strain L7 |
| APC987 | | 18S rRNA | novel eukaryotic phyla, APC |
| HLB1074 | | 18S rRNA | Heterolobosea |
| VAH1044 | | 18S rRNA | Vahlkampfiidae |
| NAE1041 | | 18S rRNA | Naegleria spp. |
| Ccat | | 26S rRNA | Candida catenulata |
| Cint | | 26S rRNA | Candida intermedia |
| Geo | | 26S rRNA | Geotrichum sp. |
| Ylip | | 26S rRNA | Yarrowia lipolytica |
| DF198 | S-*Bact-0198-a-A-20 | 16S rRNA | Defluviicoccus related organisms, cluster III |
| DF1004 | S-*-Bact-1004-a-A-18 | 16S rRNA | Defluviicoccus related organisms, some cluster III |
| DF1013 | S-*Bact-0198-a-A-20 | 16S rRNA | Defluviicoccus related organisms. some cluster III |
| DF181A | S-*-Bact-0181-a-A-20 | 16S rRNA | Defluviicoccus vanus related organisms, some cluster IV |
| DF181B | S-*-Bact-0181-b-A-18 | 16S rRNA | Defluviicoccus related organisms, some cluster IV |
| LS_HOL189 | L-P-Acido-0189-a-A-18 | 23S rRNA | Acidobacteria |
| SS_HOL1400 | S-P-Acido-1400-a-A-17 | 16S rRNA | Acidobacteria |
| LS_ALP544 | L-*-kan1–0544-a-A-18 | 23S rRNA | LS_LKC21_kan1 |
| LS_ALP761 | L-*-Sub7–0761-a-A-18 | 23S rRNA | Parts of Acidobacterial subgroup 7 (including LS_LKC21_kan1, DON29, DON30, DON31) |
| SS_subd7_UB55–585 | S-*-Sub7–0585-a-A-18 | 16S rRNA | Clone SS_LKC22_UB55, subgroup 7 SS_LKC22_UA71, SS_LKC21_kan1 |
| SS_subd7_UB55–632 | S-*-Sub7–0632-a-A-18 | 16S rRNA | Clone SS_LKC22_UB55, subgroup 7 SS_LKC22_UA71, SS_LKC21_kan1 |
| LS_subd8_SGB1223 | L-*-Sub8–1223-a-A-18 | 23S rRNA | Acidobacterial subgroup 8 LS_LKC11_kan2, LS_LKC22_kan3, LS_LKC11_kan4, LS_LKC21_kan5 (LS_LKC11_kan6), clone ZC6, G. fermentans, H. foetida |
| LS_subd8_SGB1420 | L-*-Sub8-1420-a-A-18 | 23S rRNA | Acidobacterial subgroup 8 LS_LKC11_kan2, LS_LKC22_kan3, LS_LKC11_kan4, LS_LKC21_kan5, LS_LKC11_kan6, clone ZC6, G. fermentans, H. foetida, |
| LS_GFER2787 | L-*-Gfer-2787-a-A-18 | 23S rRNA | G. fermentans and relatives (no LKC clones) |
| S-S-T.int-0442-a-A-18 | | 16S rRNA | Thiomonas intermedia |
| S-S-T.plum-450-a-A-18 | | 16S rRNA | Thiobacillus plumbophilus |
| S-S-H.neap-635-a-A-19 | | 16S rRNA | Halothiobacillus neapolitanus |
| RB454 | | 16S rRNA | Pirellula sp. strain SH1 |
| PIR1223 | | 16S rRNA | Genus Pirellula |
| YDC69 | | 16S rRNA | uncultivated magnetotactic cocci (Candidatus Magnetococcus yuandaducum) |
| L2CG353 | | 23S rRNA | Leptospirillum ferriphilum 5-way CG |
| L2UBA353 | | 23S rRNA | Leptospirillum rubarum UBA |
| BDE525 | | 16S rRNA | Genus Bdellovibrio |
| OilvGAM1 | S-S-OicG1-0643 | 16S rRNA | Olavius ilvae and Olavius crassitunicatus Gamma 1 symbionts |
| Oalg/OilvGAM3 | S-G-OaiG3-0665-a-A-18 | 16S rRNA | Olavius algarvensis / Olavius ilvae Gamma 3 symbionts, some env. Clones |
| OalgDEL1 | S-S-OaD1-0136-a-A-18 | 16S rRNA | Olavius algarvensis Delta 1 symbiont |
| OilvDEL1 | S-S-OiD1-0136-a-A-18 | 16S rRNA | Olavius ilvae Delta 1 symbiont, unc. bacterium AY907763 |
| Oalg/OilvDEL3 | S-G-OaiD3-1449-a-A-18 | 16S rRNA | Olavius algarvensis/ Olavius ilvae Delta 3 symbiont |
| OalgDEL4 | S-S-OaD4-1427-a-A-18 | 16S rRNA | Olavius algarvensis Delta 4 symbiont |
| SPIRO | S-G-OISpi-0136-a-A-18 | 16S rRNA | spirochete symbiont group of gutless oligochaetes |
| XenoGam441 | | 16S rRNA | Xenoturbella bocki gammaproteobacterial endosymbiont and relatives |
| XenoGam666 | | 16S rRNA | Xenoturbella bocki gammaproteobacterial endosymbiont and relatives |
| XenoGam727 | | 16S rRNA | Xenoturbella bocki gammaproteobacterial endosymbiont and relatives |
| SymLl1251 | | 16S rRNA | L. lacteus symbiont |
| SymAf576 | | 16S rRNA | A. fragilis symbiont |
| SymAf1272 | | 16S rRNA | A. fragilis symbiont |
| Symco2 | | 16S rRNA | C. orbicularis symbiont |
| Rhodano 227 | S-*-Rno-0227-a-A-21 | 16S rRNA | Uncultured Rhodanobacter species closely related to Rhodanobacter thiooxydans |
| LEE82 | | 16S rRNA | Some members of the genus Leeuwenhoenkiella |
| DOK827 | | 16S rRNA | Some members of the genus Dokdonia |
| FL197 | | 16S rRNA | marine uncultured Flavobacteria clade VIS4 |
| VIS6-814 | | 16S rRNA | marine uncultured Flavobacteria clade VIS6 |
| VIS5-586 | | 16S rRNA | marine uncultured Flavobacteria clade VIS5 |
| FL845 | | 16S rRNA | marine uncultured Flavobacteria clade VIS2 |
| VIS3-183 | | 16S rRNA | marine uncultured Flavobacteria clade VIS3 |
| VIS1-575 | | 16S rRNA | marine uncultured Flavobacteria clade VIS1 |
| PSE227 | | 16S rRNA | Pseudomonas spp. |
| PSE1284 | | 16S rRNA | Pseudomonas spp. |
| TOL1028 | S-S-TOL-1028-a-A-18 | 16S rRNA | Strain TOL (from oleate enrichment) |
| TSP436 | S-*-0436-a-A-18 | 16S rRNA | Clones TPA, TST, and JA2 (from Palmitate, Stearate, and Oleate enrichments, respectively) |
| MPA1446 | S-*-1446-a-A-18 | 16S rRNA | Strain MPA (from Palmitate enrichment) |
| MST445 | S-*-0445-a-A-18 | 16S rRNA | Clone MST (from Stearate enrichment) |
| MSP1445 | S-*-1445-a-A-18 | 16S rRNA | Clones MOL and MLI (from Oleate and Linoleate enrichment, respectively) |
| DEN220 | | 16S rRNA | Acetate-denitrifying cluster and some members of the
Comamonadaceae family |
| DEN220a | | 16S rRNA | Acetate-denitrifying cluster and some members of the Rhodocyclaceae family |
| DEN441 | | 16S rRNA | Acetate-denitrifying cluster and some members of the Rhodocyclaceae family |
| DEN444 | | 16S rRNA | Acetate-denitrifying cluster |
| DEN1454 | | 16S rRNA | Acetate-denitrifying cluster |
| FB648 | | 16S rRNA | Thioturbo danicus and strain DK4 |
| FB741 | | 16S rRNA | Thioturbo danicus and strain DK4 |
| FB842 | | 16S rRNA | Strain DK4 |
| Rotcl1 | | 16S rRNA | Cluster related to Methanosaeta concilii |
| Rotcl2 | | 16S rRNA | Cluster related to endosymbiont of P. nasuta |
| WPF464 | | 16S rRNA | filaments from hydrothermal vents near White Point |
| VSO673 | | 16S rRNA | Unattached, vacuolate, sulfur-oxidizing bacteria |
| DEN67 | | 16S rRNA | Methanol-utilizing denitrifying cluster group A closely related to the obligate methylotrophs Methylobacillus and Methylophilus in the order Methylophilales |
| SAP553 | | 16S rRNA | Mostly Saprospiraceae family |
| Geo/Blasto | | 16S rRNA | Geodermatophilus/Blastococcus group |
| Modesto | | 16S rRNA | Modestobacter genus |
| UP23b | | 16S rRNA | Urothoe poseidonis clone UP23b |
| Curvi997 | | 16S rRNA | Genus Curvibacter |
| CYT1448 | | 16S rRNA | Cytophaga spp. |
| CYT1438 | | 16S rRNA | Cytophaga spp. |
| NOR5-730 | | 16S rRNA | NOR5 cluster (Gammaproteobacteria) |
| NOR5-130 | | 16S rRNA | NOR5 isolate KT71 (Gammaproteobacteria) |
| ROS537 | | 16S rRNA | Marine alpha cluster |
| KT13-231 | | 16S rRNA | KT1117 (Roseobacter lineage isolate) |
| KT09b | | 16S rRNA | KT0917 (Roseobacter lineage isolate) |
| KT09c | | 16S rRNA | KT0917 (Roseobacter lineage isolate) |
| RC1031 | | 16S rRNA | KT0202a (Roseobacter lineage isolate) |
| RC1239 | | 16S rRNA | KT0202a (Roseobacter lineage isolate) |
| Ros7-1029 | | 16S rRNA | JP7.1 group (marine alpha cluster) |
| Erythro69 | | 16S rRNA | JP13.1 group (Erythrobacter) |
| Rhizo218 | | 16S rRNA | JP66.1 group (Phyllobacterium) |
| Lis-1255 | | 16S rRNA | Genus Listeria, Bacillus thermosphacta, Bacillus campestris |
| Salm-63 | | 23S rRNA | Salmonella spp., Plesiomonas shigelloides |
| BEG811 | | 16S rRNA | Frasassi Beggiatoa clade |
| 18Alf-0218 | S-*-18ALF-0218-a-A-18 | 16S rRNA | Methanotrophic symbiont of Sphagnum mosses |
| 18Alf-1437 | S-*-18ALF-1437-a-A-18 | 16S rRNA | Methanotrophic symbiont of Sphagnum mosses |
| SEEP1a-473 | S-*-SP1a-0473-a-A-23 | 16S rRNA | Desulfosarcina/Desulfococcus subgroup SEEP-SRB1a (ANME-2 partner) |
| SEEP1a-1441 | S-*-SP1a-1441-a-A-18 | 16S rRNA | Desulfosarcina/Desulfococcus subgroup SEEP-SRB1a (ANME-2 partner) |
| SEEP1f-153 | S-*-SP1f-0153-a-A-18 | 16S rRNA | Desulfosarcina/Desulfococcus subgroup SEEP-SRB1f |
| Pedo_1250 | | 16S rRNA | Pedomicrobium strains |
| Cboid198 | S-S-C.boid-0198-a-A-18 | 18S rRNA | Candida boidinii |
| S-*-CFB-0655-a-A-18 | S-*-CFB-0655-a-A-18 | 16S rRNA | OTU 8 of CFB (Cytophaga-Flavobacterium-Bacteroides) |
| S-*-CFB-0730-a-A-18 | S-*-CFB-0730-a-A-18 | 16S rRNA | OTU 9 of CFB (Cytophaga-Flavobacterium-Bacteroides) |
| S-*-GNS-0667-a-A-18 | S-*-GNS-0667-a-A-18 | 16S rRNA | OTU 11 and 12 of GNSB (green nonsulfur bacteria) |
| S-*-Opitu-0744-a-A-18 | S-*-Opitu-0744-a-A-18 | 16S rRNA | OTU 13 of Verrucomicrobia |
| ANA103 | | 16S rRNA | Actinomyces naeslundii |
| FUS664 | | 16S rRNA | Fusobacterium nucleatum, |
| MIT588 | | 16S rRNA | Streptococcus oralis |
| ODB1021 | | 16S rRNA | Octadecabacter spp. |
| RSHP995 | | 16S rRNA | Roseobacter sp. strain Shippagan group |
| GPU622 | | 16S rRNA | Glaciecola punicea |
| GVstr214 | | 16S rRNA | Glaciecola sp. strain GVstr214.6 |
| SF825 | | 16S rRNA | Shewanella frigidimarina |
| PSYB476 | | 16S rRNA | Psychrobacter spp. |
| MB-IC022 | | 16S rRNA | Marinobacter sp. strain IC022 group |
| PB223 | | 16S rRNA | Polaribacter spp. |
| GAN850 | | 16S rRNA | Gallibacterium |
| VP403 | | 16S rRNA | Verrucomicrobium, most Prosthecobacter, and uncultured relatives |
| SPA714 | | 16S rRNA | Most Spartobacteria and uncultured relatives |
| SPA649 | | 16S rRNA | Uncultured humic and acidic lake Spartobacteria |
| OPT1169 | | 16S rRNA | Opitutus spp. and uncultured relatives |
| Blsv1030 | | 16S rRNA | Blastochloris viridis |
| Rbla1372 | | 16S rRNA | Rhodobacter blasticus |
| Rbmr151 | | 16S rRNA | Rhodobium marinum, Rhodopseudomonas julia |
| Rvsl139 | | 16S rRNA | Rhodovulum sulfidophilum |
| Cboid198 | S-S-C.boid-0198-a-A-18 | 18S rRNA | Candida boidinii |
| KIN516 | | 18S rRNA | Kinetoplastida |
| CFX197 | S-*-Bact-0197-a-A-18 | 16S rRNA | Eikelboom type 0092 Chloroflexi |
| CFX223 | S-*-Bact-0223-a-A-18 | 16S rRNA | Eikelboom type 0092 Chloroflexi |
| CFX67a | S-*-Bact-0067-a-A-18 | 16S rRNA | Eikelboom type 0914 Chloroflexi |
| CFX67b | S-*-Bact-0067-b-A-18 | 16S rRNA | Eikelboom type 0914 Chloroflexi |
| ERY174 | | 16S rRNA | Some Novosphingomonas, Erythrobacter and Porphyrobacter |
| PARA739 | | 16S rRNA | Order Rhodobacterales |
| RHIZ1244 | | 16S rRNA | Order Rhizobiales |
| Lepto175 | | 16S rRNA | Leptothrix ochracea |
| Dbact653 | S-F-Dsb-0653-a-A-18 | 16S rRNA | Desulfococcus/Desulfosarcina/Desulfonema |
| DSU655 | | 16S rRNA | Genus Desulfurella |
| ATAM01 | S-S-A.tam-0775(A. Tamarense)-a-A-18 | 18S rRNA | Alexandrium tamarense species complex |
| ATNA02 | L-St-At.NA-373(A. tamarense)-a-A-18 | 28S rRNA | Alexandrium tamarense /North American clade/Orkney strains |
| ATWE03 | | 28S rRNA | Alexandrium tamarense /Western European clade |
| ATME04 | | 28S rRNA | Alexandrium tamarense / Mediterranean clade |
| DINO01 | S-C-DINO-1404(A. tamarense)-a-A-20 | 18S rRNA | Dinoflagellates / Dinophyceae |
| AOST01 | L-S-A.ost-484(A. ostenfeldii)-a-A-18 | 28S rRNA | Alexandrium ostenfeldii |
| AOST02 | S-S-A.ost-0232(A. ostenfeldii)-a-A-18 | 18S rRNA | Alexandrium ostenfeldii |
| Bfi826 | S-S-But-0826-a-18 | 16S rRNA | Butyrivibrio fibrisolvens-related clones, phylum Firmicutes |
| Rum831 | S-S-Rum-0831-a-16 | 16S rRNA | Rumen clones in family Ruminococcaceae, phylum Firmicutes |
| Lac435 | S-S-Lac-0435-a-16 | 16S rRNA | Clones in family Lachnospiraceae, phylum Firmicutes |
| Ral1436 | S-S-Rum-1436-15 | 16S rRNA | Ruminococcus albus-related clones, phylum Firmicutes |
| Rfl155 | S-S-Rum-0155-a-15 | 16S rRNA | Ruminococcus flavefaciens-related clones, phylum Firmicutes |
| Bac1080 | S-S-Bac-1080-a-18 | 16S rRNA | Clones in order Bacteroidales, phylum Bacteroidetes |
| fir5-575 | | 16S rRNA | Firm-5 (symbiotic Firmicutes phylotype in honey bee) |
| But1243 | S-S-But-1243-a-18 | 16S rRNA | rumen Butyrivibrio clones |
| Clo549 | S-S-Clo-0549-a-18 | 16S rRNA | unclassified Rumen Clostridia clones |
| Inc852 | S-S-Inc-0852-a-18 | 16S rRNA | Rumen Inceatae Sedis XIII clones |
| Pse1257 | S-S-Pse-1257-18 | 16S rRNA | Rumen Pseudobutyrivibrio clones |
| Ace731 | S-S-0731-a-18 | 16S rRNA | Rumen Acetivibrio clones |
| Vei732 | S-S-0732-a-18 | 16S rRNA | Rumen Veillonellaceae clones |
| Pseudo120 | | 16S rRNA | rRNA group I pseudomonads |
| SUB 196 | | 16S rRNA | Streptococcus uberis |
| APYO 183 | | 16S rRNA | Arcanobacterium pyogenes |
| Syner195 | | 16S rRNA | Synergistes group 4 (Synergistetes PD-UASB-13) |
| Lmon | | 16S rRNA | Listeria monocytogenes |
| CLOSs146 | S-S-CLOS-0146-a-18 | 16S rRNA | Incertae Sedis XI |
| CLOSs654 | S-S-CLOS-0654-a-18 | 16S rRNA | Grocilibacteraceae |
| RUMs278 | S-S-Rum-0278-a-18 | 16S rRNA | Ruminococcaceae |
| FIMs1029 | S-S-FIM-1029-1-18 | 16S rRNA | Clostridiaceae 2 |
| Cboid198 | | 18S rRNA | Candida boidinii |
| CJ2 | | 16S rRNA | Polaromonas naphthalenivorans strain CJ2 |
| NebProb203 | S-S-Neby-0203-a-A-18 | 16S rRNA | Candidatus Nebulobacter yamunensis |
| FNFProb759 | S-*-Bact-0759-a-A-17 | 16S rRNA | Bacteroidetes, Francisellaceae, other prokaryotes |
| Ng02 | | 16S rRNA | Nosema / Vairimorpha genus (microsporidia) |
| Dd04 | | 16S rRNA | Dictyocoela (microsporidia) |
| AQI338 | | 16S rRNA | Phylum Aquificae (except Desulfurobacteriaceae) |
| SFH646 | | 16S rRNA | Sulfurihydrogenibium spp. (except S. Yellowstonense) including Nakabusa microbial mat sequences |
| Deflu_197 | S-S-Deflu-0197-a-A-20 | 16S rRNA | Candidatus Defluviella procrastinata |
| CyrIn_142 | S-S-Cyrz-0142-a-A-23 | 16S rRNA | Candidatus Cyrtobacter zanobii |
| Faecali698 | | 16S rRNA | Faecalibacterium and relatives |
| Clep866 | S-*-Clep-0866-a-A-18 | 16S rRNA | members of the Clostridium leptum subgroup |
| Rcal733 | S-*-Rcal-0733-a-A-20 | 16S rRNA | members of the Ruminococcus callidus species |
| Cvir1414 | S-*-Cvir-1414-a-A-18 | 16S rRNA | Clostridium viride cluster |
| Edes635 | S-*-Edes-0635-a-A-18 | 16S rRNA | Eubacterium desmolans species |
| Bfrag 998 | S-S-Bfrag-0998-a-A-20 | 16S rRNA | Bacteroides fragilis |
| Bvulg 1017 | S-S-Bvulg-1017-a-A-21 | 16S rRNA | Bacteroides vulgatus |
| Fprau0645 | S-*-Fprau-0645-a-A-23 | 16S rRNA | Feacalibacterium (Fusobacterium) prausnitzii and relatives |
| Mcs487 | S-S-Mcs-0487-a-A-21 | 16S rRNA | Mucispirillum spp. |
| Mcs547 | S-S-Mcs-0547-a-A-20 | 16S rRNA | Mucispirillum spp. |
| MUC-1437 | S-G-Akk-1437-a-A-20 | 16S rRNA | Akkermansia muciniphila |
| Bacid1 | | 16S rRNA | B. acidifaciens Group 1 |
| Bacid3 | | 16S rRNA | B. acidifaciens Group 3 |
| Bot | | 16S rRNA | B. ovatus and B. thetaiotaomicron |
| Bova | | 16S rRNA | Bacteroides ovatus |
| Bthe | | 16S rRNA | Bacteroides thethaiotaomicron |
| Buni | | 16S rRNA | Bacteroides uniformis |
| Bcac | | 16S rRNA | Bacteroides caccae |
| P(T)AFO | | 16S rRNA | Tannerella forsythensis (Bacteroides forsythus) |
| POGI | | 16S rRNA | Porphyromonas gingivalis and uncultured Porphyromonas |
| PRIN | | 16S rRNA | Prevotella intermedia, Prevotella falsenii and uncultured Prevotella |
| Bovat 1028 | S-S-Bovat-1028-a-A-19 | 16S rRNA | Bacteroides ovatus |
| Bdist 1025 | S-S-Bdist-1025-a-A-19 | 16S rRNA | Bacteroides distasonis (Parabacteroides distasonis) |
| Bputre 698 | S-S-Bputre-698-a-A-20 | 16S rRNA | Bacteroides putredinis (Alistipes putredinis) |
| Efs | | 23S rRNA | Enterococcus faecalis FAIR E 92 |
| LPLANG | | 16S rRNA | Lactobacillus plantarum 423 |
| LSAL | | 16S rRNA | Lactobacillus salvirius 241 |
| Lba | | 23S rRNA | Lactobacillus acidophilus (cluster A1) |
| Lbg | | 23S rRNA | Lactobacillus gasseri (cluster B1) |
| Lbj | | 23S rRNA | Lactobacillus johnsonii (cluster B2) |
| LSPotu9468-999 | S-*-Lsp-999-a-A-20 | 16S rRNA | Lachnospiraceae OTU_9468 |
| LSPotu9468-1259 | S-*-Lsp-1259-a-A-20 | 16S rRNA | Lachnospiraceae OTU_9468 |
| Chis150 | S-*-Chis-0150-a-A-23 | 16S rRNA | most of the Clostridium histolyticum group (Clostridium cluster I and II) |
| LSPotu11021-1448 | S-*-Lsp-1448-a-A-18 | 16S rRNA | Lachnospiraceae OTU_11021 |
| Law1 | | 16S rRNA | Lawsonia intracellularis |
| Lab158 | S-G-Lab-0158-a-A20 | 0S rRNA | Lactobacilli Enterococci |
| Rrec584 | | 16S rRNA | Roseburia |
| Prop853 | | 16S rRNA | Clostridial cluster IX |
| Bx183 | S-S-B.x-0183-a-A-18 | 16S rRNA | Brachyspira aalborgi clusters 2 and 3 |
| Aalborgi183 | S-S-B.aalborgi-0183-a-A | 16S rRNA | Brachyspira aalborgi cluster 1 |
| Erec834 | S-S-Erec-0834-a-A-18 | 16S rRNA | Eubacterium rectale |
| Erec838 | S-S-Erec-0838-b-A-20 | 16S rRNA | Eubacterium rectale |
| Etor727 | S-S-Etor-0727-a-A-18 | 16S rRNA | Eubacterium tortuosum |
| Etor129 | S-S-Etor-0129-b-A-18 | 16S rRNA | Eubacterium tortuosum |
| Lbd | | 23S rRNA | Lactobacillus delbrueckii subsp. |
| EC 1531 | L-S-Eco-1531-a-A-21 | 23S rRNA | Escherichia coli BJ4 |
| Sym_Stau_303 | | 16S rRNA | Bacteroidales clone Candidatus Vestibaculum illigatum |
| Ntlc439 | S-G-Ntlc-439-a-A-18 | 16S rRNA | Nitrolancetus hollandicus |
| Bif228 | S-G-Bif-228-a-A-18 | 16S rRNA | Bifidobacteria |
| Ntlc804 | S-G-Ntlc-804-a-A-18 | 16S rRNA | Nitrolancetus hollandicus |
| Alsym16S | S-G-Burk-0642-a-A-19 | 16S rRNA | Burkholderia (Alydidae gut symbionts) |
| MCP52 | | 16S rRNA | Mollicutes |
| CPla-1 | | 16S rRNA | „Termite planctomycete cluster 1“ |
| CPla-2 | | 16S rRNA | „Termite planctomycete cluster 2“ |
| CPla-3 | | 16S rRNA | „Termite planctomycete cluster 2“ |
| LytiProb_433 | S-G-Lyti-0433-a-A-21 | 16S rRNA | genus Lyticum |
| Lflag_268 | S-S-Lfla-0268-a-A-23 | 16S rRNA | Lyticum flagellatum |
| Lsinu_268 | S-S-Lsin-0268-a-A-23 | 16S rRNA | Lyticum sinuosum |
| Pse136 | S-S-Pse-136-a-A-20 | 16S rRNA | Some Pseudomonas populations |
| Pse136b | S-S-Pse-136b-a-A-20 | 16S rRNA | Some Pseudomonas populations |
| Pse910 | S-S-Pse-910-a-A-18 | 16S rRNA | Some Pseudomonas populations |
| Hal180 | S-S-Hal-180-a-A-22 | 16S rRNA | Some Halomonas populations |
| Elo1-1250 | S-S-Elo1-1250-a-A-18 | 16S rRNA | Tetrasphaera elongata and related clones |
| Tet1-823 | S-S-Tet1-823-a-A-18 | 16S rRNA | Tetrasphaera elongata-related clones |
| Tet1-266 | S-S-Tet1-266-a-A-18 | 16S rRNA | Tetrasphaera Clone ASM31 |
| Tet2-842 | S-S-Tet2-842-a-A-18 | 16S rRNA | Clones related to Tetrasphaera jenkinsii, Tetrasphaera australiensis, and Tetrasphaera veronensis |
| Tet2-831 | S-S-Tet2-831-a-A-18 | 16S rRNA | Tetrasphaera australiensis, Tetrasphaera veronensis, and uncultured Tetrasphaera |
| Tet2-892 | S-S-Tet2-892-a-A-18 | 16S rRNA | Tetrasphaera Clone ASM47 |
| Tet2-87 | S-S-Tet2-87-a-A-18 | 16S rRNA | Uncultured Tetrasphaera |
| Tet2-174 | S-S-Tet2-174-a-A-18 | 16S rRNA | Tetrasphaera jenkinsii, Tetrasphaera australiensis, Tetrasphaera veronensis, and Candidatus Nostocoida limicola |
| Tet3-654 | S-S-Tet3-654-a-A-18 | 16S rRNA | 3 Uncultured Tetrasphaera |
| Tet3-19 | S-S-Tet3-19-a-A-18 | 16S rRNA | Tetrasphaera Clone ASM57 |
| Str56 | S-S-Str-56-a-A-18 | 16S rRNA | Streptococcus spp. |
| Lac93 | S-S-Lac-93-a-A-18 | 16S rRNA | Lactococcus spp. |
| Pro60 | S-S-Pro-60-a-A-18 | 16S rRNA | Propionicimonas spp. |
| LasA3720_1281 | S-*-LspA-1281-a-A-23 | 16S rRNA | subgroup A of unclassified Lachnospiraceae OTU |
| LasB3720_1281 | S-*-LspB-1281-a-A-23 | 16S rRNA | subgroup B of unclassified Lachnospiraceae OTU |
| Bac16065_472 | S-*-Bada-0472-a-A-24 | 16S rRNA | unclassified Bacteroidales cluster S24-7 OTU |
| Bac3732_846 | S-*-Bada-0846-a-A-24 | 16S rRNA | unclassified Bacteroidales cluster S24-7 OTU |
| Bac11839_649 | S-*-Bada-0649-a-A-23 | 16S rRNA | unclassified Bacteroidales cluster S24-7 OTU |
| Bac15326_476 | S-*-Bada-0476-a-A-23 | 16S rRNA | unclassified Bacteroidales cluster S24-7 OTU |
| Bac13481_437 | S-*-Bada-0437-a-A-22 | 16S rRNA | unclassified Bacteroidales cluster S24-7 OTU |
| All3256_484 | S-*-Allb-0484-a-A-22 | 16S rRNA | subgroup of genus Allobaculum |
| Baci731A_87 | S-*-Baci-0087-a-A-24 | 16S rRNA | Bacteroides acidifaciens Group-2 |
| Baci731B_87 | S-*-Baci-0087-a-A-22 | 16S rRNA | Bacteroides acidifaciens Group-1 |
| Rum14644A_184 | S-*-Ruco-0184-a-A-23 | 16S rRNA | unclassified Oscillibacter OTU |
| Rum14644B_64 | S-*-Ruco-0064-a-A-24 | 16S rRNA | unclassified Oscillibacter OTU |
| Rum17903_443 | S-*-Ruco-0443-a-A-20 | 16S rRNA | unclassified Ruminococcaceae OTU |
| LasA5944_580 | S-*-LspA-0580-a-A-24 | 16S rRNA | subgroup A of unclassified Lachnospiraceae OTU |
| LasB5944_580 | S-*-LspB-0580-a-A-24 | 16S rRNA | subgroup B of unclassified Lachnospiraceae OTU |
| Lab9057_570 | S-S-Lbad-0570-a-A-23 | 16S rRNA | Lactobacillus taiwanensis - L. johnsonii - L. gasseri group |
| Lab2185_87 | S-*-Lbre-0087-a-A-24 | 16S rRNA | Lactobacillus reuteri |
| UCB-823 | | 16S rRNA | Plasticicumulans acidivorans |
| ULB-450 | | 16S rRNA | Plasticicumulans lactivorans |
| UCB-127 | | 16S rRNA | Plasticicumulans acidivorans |
| L.mars_symb1 | | 16S rRNA | Endosymbiont type A of Lamellibrachia anaximandri (Marsili seamount) |
| L.mars_symb2 | | 16S rRNA | Endosymbiont type B of Lamellibrachia anaximandri (Marsili seamount) |
| volv-835 | | 16S rRNA | Rickettsial endosymbionts hosted by Carteria, Pleodorina, Volvox (green algae) and Diophrys appendiculata (ciliate) |
| PDD8_644 | | 16S rRNA | Candidatus Cochliophilus cryoturris, symbiont of Cochliopodium minus |
