| Aqua828 | S-*-Aqua-0828-a-A-18 | 16S rRNA | Aquabacterium spp. |
| Pomo828 | S-*-Pomo-0828-a-A-18 | 16S rRNA | Polaromonas vacuolata |
| Gor596 | S-G-Gor-0596-a-A-22 | 16S rRNA | Gordonia (Gordona) |
| Fibr225 | S-G-Fibr-0225-a-A-21 | 16S rRNA | Fibrobacter |
| Fibr153 | S-G-Fibr-0153-a-S-16 | 16S rRNA | Fibrobacter |
| Lchm207 | | 16S rRNA | Lachnospira multiparus |
| 804(Dsb804) | S-*-Dsb-0804-a-A-18 | 16S rRNA | Some Desulfobacteraceae |
| 814(Dscoc814) | S-*-Dscoc-0814-a-A-18 | 16S rRNA | Few Desulfobacteraceae |
| 858FL | S-G-Deino-0858-a-S-35 | 16S rRNA | genus Deinococcus |
| ACA652 (ACA23A) | S-G-Acin-0652-a-A-18 | 16S rRNA | Acinetobacter |
| Acdp821 | S-G-Acdp-0821-a-A-24 | 16S rRNA | Acidiphilium |
| Ade441 | | 16S rRNA | Alcaligenes defragans |
| ALBO34a | | 23S rRNA | Bordetella spp., Alcaligenes spp. (sensu stricto) |
| ALF1B | S-Sc-aProt-0019-a-A-17 | 16S rRNA | Alphaproteobacteria, some Deltaproteobacteria, Spirochaetes |
| ALF4-1322 | | 16S rRNA | alpha4-subgroup of Proteobacteria |
| ALF73a | | 23S rRNA | some Alphaproteobacteria |
| ALF921 | | 16S rRNA | Nevskia ramosa clone NO22 |
| ALF968 | | 16S rRNA | Alphaproteobacteria, except of Rickettsiales |
| Am445 | S-F-aMtr-0445-a-A-28 | 16S rRNA | a-Methanotrophs |
| Am976 | S-F-aMtr-0976-a-A-20 | 16S rRNA | a-Methanotrophs |
| ANAB | | 16S rRNA | Anabaena |
| APHA | | 16S rRNA | Aphanizomenon |
| ARC344 | | 16S rRNA | Archaea |
| ARCH915 (ARC915) | S-D-Arch-0915-a-A-20 | 16S rRNA | Archaea |
| AT1458 | | 16S rRNA | Azoarcus-Thauera cluster |
| Azo1251 | | 16S rRNA | Azoarcus tolulyticus strains Tol-4, Td-1, Td-15, Td-17, Td-19, Td-21, A. evansii KB740, Azoarcus sp. strain pF6 |
| AZA483 | S-*-Aza-0645-a-A-18 | 16S rRNA | Azoarcus cluster |
| BAC303 | S-*-Bacto-0303-a-A-17 | 16S rRNA | most Bacteroidaceae and Prevotellaceae, some Porphyromonadaceae |
| BACSUCC | | 16S rRNA | Fibrobacter succinogenes (Bacteroides succinogenes) NR9 and DR7 |
| Bcv13b | | 23S rRNA | Burkholderia vietnamensis, B. cepacia |
| BET42a | L-C-bProt-1027-a-A-17 | 23S rRNA | Betaproteobacteria |
| Bif1278 | S-G-Bif-1278-a-A-17 | 16S rRNA | Bifidobacterium spp. |
| LSPotu11021-1127 | S-*-Lsp-1127-a-A-20 | 16S rRNA | Lachnospiraceae OTU_11021 |
| Bif164 | S-G-Bif-0164-a-A-18 | 16S rRNA | Bifidobacterium spp. |
| Bif662 | S-G-Bif-0662-a-A-18 | 16S rRNA | Bifidobacterium spp. |
| BONE23A | | 16S rRNA | beta1-group of Betaproteobacteria |
| BTWO23A | | 16S rRNA | competitor for BONE23A |
| CF319a | | 16S rRNA | most Flavobacteria, some Bacteroidetes, some Sphingobacteria |
| CF319b | | 16S rRNA | some Flavobacteria and Sphingobacteria |
| CFB1082 | | 16S rRNA | most members of the class Bacteroidetes |
| CFB286 | | 16S rRNA | most members of the genus Tannerella and the genus Prevotella of the class Bacteriodetes |
| CFB563 | | 16S rRNA | most Flavobacteria |
| CFB719 | | 16S rRNA | most members of the class Bacteriodetes, some Flavobacteria and Sphingobacteria |
| CFB972 | | 16S rRNA | some Flavobacteria |
| Chls-0523 | S-O-Chls-0523-a-A-18 | 16S rRNA | Chlamydiales |
| CIV/V1342 | | 16S rRNA | heterocystous strains of cyanobacteria (sections IV and V) |
| cl81-644 | | 16S rRNA | Few Desulfobacteraceae |
| Clept1240 | S-G-Clept-1240-a-A-18 | 16S rRNA | Clostridium leptum |
| CREN499 | S-K-Cren-0499-a-A-18 | 16S rRNA | most Crenarchaeota |
| CYA361 | | 16S rRNA | most Cyanobacteria |
| CYA664 | | 16S rRNA | most Cyanobacteria |
| CYA762 | | 16S rRNA | most Cyanobacteria |
| D-acet1027r (DFACE1028) | S-S-Df.ace-1028-a-A-18 | 16S rRNA | Desulfotomaculum acetoxidans |
| 660(DBB660) | S-G-Dsbb-0660-a-A-20 | 16S rRNA | some Desulfobulbus |
| 221(DBM221) | S-G-Dsbm-0221-a-A-20 | 16S rRNA | Desulfobacterium vacuolatum, D. niacini, D. autotrophicum |
| DCC209 | S-S-Dcc.mv-0209-a-A-18 | 16S rRNA | Desulfococcus multivorans |
| DCC868 | S-*-Dsb-0868-a-A-18 | 16S rRNA | Desulfosarcina sp., Desulfonema spp., Desulfococcus sp., Desulfobacterium spp., Desulfobotulus sp., Desulfostipes sp., Desulfomusa sp. |
| DDK3 | | 16S rRNA | Treponema sp. DDKL-3 |
| DDK4 | | 16S rRNA | Treponema phagedenis, DDKL-4 |
| DEM1164r | | 16S rRNA | Desulfotomaculum cluster I and other Firmicutes |
| DEM-RC1015r | | 16S rRNA | Desulfotomaculum clone sequences from rice paddy soil |
| Dsb220(desulfobacter) | S-G-Dsb-0220-a-A-20 | 16S rRNA | most Desulfobacter |
| DFM228 | | 16S rRNA | Desulfotomaculum spp. |
| DNMA657 | | 16S rRNA | some Desulfonema |
| DRM432 | | 16S rRNA | Desulfuromonas spp., Pelobacter spp. |
| 129(DSB129) | S-G-Dsb-0129-a-A-18 | 16S rRNA | most Desulfobacter |
| DSB623 | | 16S rRNA | Desulfobacter spp. |
| DSB985 | | 16S rRNA | Desulfobacter, Desulfobacula, Desulfospira, and Desulfotignum |
| DSBAC355 | | 16S rRNA | most Desulfobacterales and Syntrophobacterales |
| DSBO224 | | 16S rRNA | Desulfobotulus sapovorans, Desulfovibrio fairfieldensis, and other Deltaproteobacteria |
| DSC193 | S-*-Dsb-0193-a-A-18 | 16S rRNA | Desulfosarcina variabilis |
| DSD131 (DSVAE131) | S-S-Dsv.ae-0131-a-A-18 | 16S rRNA | Desulfovibrio aestuarii |
| DSF672 | | 16S rRNA | Desulfofrigus, Desulfofaba gelida, Desulfomusa hansenii |
| DSMA488 | | 16S rRNA | Desulfarculus baarsii, Desulfomonile tiedjei, and Syntrophus |
| DSR651 | S-*-Dsb-0651-a-A-18 | 16S rRNA | Some Desulfobulbaceae |
| DSS225 | | 16S rRNA | Desulfosarcina and many other Desulfobacteraceae |
| DSS658 | S-*-Dsb-0658-a-A-18 | 16S rRNA | Desulfobacteraceae and other Bacteria |
| DSV1154 | | 16S rRNA | Desulfovibrio alcoholivorans, D. fructosivorans, D. burkinensis, rice field isolate F1-7b and R-SucA1 |
| DSV1292 | S-*-Dsv-1292-a-A-18 | 16S rRNA | Some Desulfovibrio and Bilophila wadsworthia |
| DSV214 | | 16S rRNA | Most Desulfomicrobium |
| DSV407 | | 16S rRNA | Few Desulfovibrionaceae, Desulfohalobiaceae, and Desulfonatronumaceae |
| Dsv683 | S-*-Dsv-0683-a-A-22 | 16S rRNA | Desulfovibrionaceae, metal reducers |
| 687(DSV687) | S-F-Dsv-0687-a-A-16 | 16S rRNA | Most Desulfovibrionales (excluding Lawsonia) and many Desulfuromonales |
| DSV698 | | 16S rRNA | Some Desulfovibrio, Bilophila wadsworthia, and Lawsonia intracellularis |
| Dtm(a)229 | S-*-Dtm(a)-0229-a-A-18 | 16S rRNA | Desulfotomaculum cluster Ia |
| Dtm(bcd)230 | S-*-Dtm(bcd)-0230-a-A-18 | 16S rRNA | Many Desulfotomaculum cluster I and other Firmicutes |
| Dtm(be)152 | S-*-Dtm(be)-0152-a-A-20 | 16S rRNA | Desulfotomaculum cluster Ib and Ie |
| Dtm(c)428 | S-*-Dtm(c)-0428-a-A-19 | 16S rRNA | Desulfotomaculum cluster Ic |
| Dtm(cd)216 | S-*-Dtm(cd)-0216-a-A-19 | 16S rRNA | Desulfotomaculum cluster Ic and Id |
| Dtm229 | S-G-Dtm-0229-a-A-18 | 16S rRNA | Desulfotomaculum cluster I and other Firmicutes |
| Eampr18 | | 23S rRNA | Enterococcus avium, E. malodoratus, E. pseudoavium, E. raffinosus |
| Eamprs09 | | 23S rRNA | Enterococcus avium, E. malodoratus, E. pseudoavium, E. raffinosus, E. sulfureus |
| Eas09 | | 23S rRNA | Enterococcus asini |
| Eav58i | | 23S rRNA | Enterococcus avium |
| Eca18i | | 16S rRNA | Enterococcus casseliflavus |
| Ecafl09i | | 23S rRNA | Enterococcus casseliflavus, E. flavescens |
| ECC460 (ECC 461) | | 16S rRNA | Enterococcus columbae, Enterococcus cecorum |
| Ecc461 | | 16S rRNA | Enterococcus columbae, E. cecorum |
| Eacdfg57 | | 23S rRNA | Enterococcus casseliflavus, E. flavescens, E. asini, E. dispar, E. gallinarum |
| Ece09 | | 23S rRNA | Enterococcus cecorum |
| ECE83 (6B) | | 16S rRNA | Enterococcus cecorum |
| ECE91 (ECE 92) | | 16S rRNA | Enterococcus cecorum |
| Ece92 | | 16S rRNA | Enterococcus cecorum |
| Ecf459 | | 16S rRNA | Enterococcus casseliflavus, E. flavescens, E. dispar, E. pseudoavium |
| Ecg191 | | 16S rRNA | Enterococcus casseliflavus, E. flavescens |
| ECG192 (ECG 191) | | 16S rRNA | Enterococcus gallinarum, Enterococcus flavescens, Enterococcus casseliflavus |
| Eco09i | | 23S rRNA | Enterococcus columbae |
| ECO1167 (ECO 45A) | | 23S rRNA | Escherichia coli |
| Ecoce58 | | 23S rRNA | Enterococcus cecorum, E. columbae |
| Edfm57 | | 23S rRNA | Enterococcus durans, E. faecium, E. mundtii |
| EDI130 (EDI 131) | | 16S rRNA | Enterococcus dispar |
| Edi131 | | 16S rRNA | Enterococcus asini |
| Edi137 | | 16S rRNA | Enterococcus dispar |
| Edi38 | | 23S rRNA | Enterococcus dispar |
| Edu58 | | 16S rRNA | Enterococcus durans |
| Eduhi09 | | 23S rRNA | Enterococcus durans, E. hirae |
| Efa54 | | 23S rRNA | Enterococcus faecalis |
| Efi58 | | 16S rRNA | Enterococcus faecium |
| Efl58i | | 23S rRNA | Enterococcus flavescens |
| Efs129 | | 16S rRNA | Enterococcus faecalis |
| Ega09 | | 23S rRNA | Enterococcus gallinarum |
| Ema58 | | 16S rRNA | Enterococcus malodorans |
| Emu58 | | 23S rRNA | Enterococcus mundtii |
| EMU87 | | 16S rRNA | Enterococcus mundtii |
| ENC1249 | | 16S rRNA | Enterococcus saccharolyticus, E.dispar, E.casseliflavus, E.faecium, E.flavescens, E.gallinarum, E.columbae, E.sulfureus |
| ENC1249-Comp | | 16S rRNA | Enterococcus malodoratus, E.avium, E.pseudoavium, E.raffinosus, E.durans, E.mundtii, Lb.brevis, Cb.brevisimilis, Cb.divergens |
| Enc1259 | | 16S rRNA | Enterococcus spp. |
| Enc131 | | 16S rRNA | Enterococcus spp. |
| Enc145 | | 16S rRNA | Enterococcus spp. |
| Enc38i | | 23S rRNA | Enterococcus spp., Melisococcus spp., Tetragenococcus spp., Vagococcus spp. |
| ENC90 (ENC 91) | | 16S rRNA | Enterococcus faecium, E.mundtii, E.hirae |
| Enc93 | | 16S rRNA | Enterococcus hirae, E. faecium |
| Eps58 | | 16S rRNA | Enterococcus pseudoavium |
| Era58 | | 23S rRNA | Enterococcus raffinosus |
| Esa09 | | 23S rRNA | Enterococcus saccharolyticus |
| Esa38 | | 23S rRNA | Enterococcus asini, E. saccharolyticus |
| Esa452 | | 16S rRNA | Enterococcus saccharolyticus |
| ESA88 (ESA 89) | | 16S rRNA | Enterococcus saccharolyticus |
| Esasu58 | | 23S rRNA | Enterococcus sulfureus, E. saccharolyticus |
| Eso18i | | 23S rRNA | Enterococcus solitarius |
| Eso193 | | 16S rRNA | Enterococcus solitarius |
| Eso58 | | 23S rRNA | Enterococcus solitarius |
| Esoha57 | | 23S rRNA | Enterococcus solitarius, Tetragenococcus halophilus |
| Esu18 | | 23S rRNA | Enterococcus sulfureus |
| Esu90 | | 16S rRNA | Enterococcus sulfureus |
| EUB338 (Bact338) (bacterial) | S-D-Bact-0338-a-A-18 | 16S rRNA | most Bacteria |
| EUB338 II (SBACT P 338) | S-*-BactP-0338-a-A-18 | 16S rRNA | Planctomycetales |
| EUB338 III (SBACT V 338) | S-*-BactV-0338-a-A-18 | 16S rRNA | Verrucomicrobiales |
| EUK516 | | 18S rRNA | Eukarya |
| EURY498 | S-K-Eury-0498-a-A-14 | 16S rRNA | most Euryarchaeota |
| FFE8b | | 16S rRNA | Flavobacterium ferrugineum |
| gam1-1246 | | 16S rRNA | “Candidatus Gilliamella apicola” or Gamma-1 (symbiotic Gammaproteobacteria phylotype in honey bee) |
| Fibro | S-G-Fibr-0153-a-S-16 | 16S rRNA | Fibrobacter |
| G.am1-439 | S-*-G.am1-0439-a-A-19 | 16S rRNA | Gordona amarae group 1 strains |
| G.am205 | S-S-G.am-0205-a-A-19 | 16S rRNA | Gordona amarae |
| G.am2-439 | S-*-G.am2-0439-a-A-19 | 16S rRNA | Gordona amarae group 2 strains |
| G123T | S-G-Thioth-697-a-A-18 | 16S rRNA | Thiothrix eikelboomii, T. nivea, T. unzii, T. fructosivorans, T. defluvii, Eikelboom type 021N group I, II, III |
| G1B | S-*-021Ng1-1029-a-A-18 | 16S rRNA | Eikelboom type 021N group I |
| G2M | S-*-021Ng2-842-a-A-18 | 16S rRNA | Eikelboom type 021N group II |
| G3M | S-*-021Ng3-996-a-A-18 | 16S rRNA | Eikelboom type 021N group III |
| GAM42a | L-C-gProt-1027-a-A-17 | 23S rRNA | Gammaproteobacteria |
| GI-554 | S-O-Cenar-0554-a-A-20 | 16S rRNA | crenarchaeal group I marine Archaea |
| GII-554 | S-O-ArgII-0554-a-A-20 | 16S rRNA | euryarchaeal group II marine Archaea |
| Gm633 | S-G-gMtr-0633-a-A-20 | 16S rRNA | Methylobacter, Methylomicrobium |
| Gm705 | S-F-gMtr-0705-a-A-18 | 16S rRNA | g-Methanotrophs except Methylocaldum |
| Goam192 | S-S-G.am-0192-a-A-18 | 16S rRNA | Gordona amarae |
| H7-1014 | S-*-H7-1014-a-A-18 | 16S rRNA | activated sludge clone H7 |
| HGC69A (HGC) | L-P-Grps-1901-a-A-18 | 23S rRNA | Actinobacteria (high G+C Gram-positive bacteria) |
| HoAc1402 | S-*-HoAc-1402-a-A-18 | 16S rRNA | Acidobacteria, activated sludge clones A22, A34, H3, H44, S6 |
| Hvu1034 | | 16S rRNA | Hyphomicrobium vulgare |
| HYD208 | | 16S rRNA | Hydrogenophaga spp. |
| HYD56B | | 23S rRNA | Hydrogenophaga spp. |
| Hydr540 | S-O-Hydr-0540-a-A-19 | 16S rRNA | Aquificales |
| intestinalis 1 | | 16S rRNA | Fibrobacter intestinalis |
| intestinalis 2 | | 16S rRNA | Fibrobacter intestinalis |
| IRog1 | | 16S rRNA | phylum Acidobacteria group a |
| IRog2 | | 16S rRNA | phylum Acidobacteria group a |
| LEG226 | | 16S rRNA | Legionellaceae |
| LEG705 | | 16S rRNA | Legionella |
| LEGPNE1 | | 16S rRNA | Legionella pneumophila |
| LGC354A | | 16S rRNA | Firmicutes (Gram-positive bacteria with low G+C content) |
| LGC354B | | 16S rRNA | Firmicutes (Gram-positive bacteria with low G+C content) |
| LGC354C | | 16S rRNA | Firmicutes (Gram-positive bacteria with low G+C content) |
| LM3 | S-G-Bif-1412-a-A-21 | 16S rRNA | Bifidobacterium genus |
| MB1 | | 16S rRNA | Methanosarcina frisius, Methanosarcina sp., Methanosarcina acidovorans, Methanosarcina thermophila, Methanosarcina barkeri |
| MB1174 | | 16S rRNA | Methanobacterium spp., Methanobrevibacter spp., Methanosphaera spp. |
| MB3 | | 16S rRNA | Methanosarcina frisius, Methanosarcina acidovorans, Methanosarcina thermophila, Methanosarcina barkeri |
| MB310 | | 16S rRNA | Methanobacterium spp., Methanobrevibacter spp., Methanosphaera spp. |
| MB4 | | 16S rRNA | Methanosarcina thermophila, Methanosarcina barkeri |
| MC1109 | | 16S rRNA | Methanococcus spp. |
| Mcd77 | S-G-gMcd-0077-a-A-21 | 16S rRNA | Methylocaldum spp. |
| Mcell-1026 | | 16S rRNA | Methylocella palustris |
| Mcell-181(AcidM-181) | | 16S rRNA | Methylocella palustris+Methylocapsa acidiphila |
| MG1200 | | 16S rRNA | Methanomicrobium spp., Methanogenium spp., Methanoculleus spp., Methanospirillum spp., Methanocorpusculum spp., Methanoplanus spp. |
| MG3 | | 16S rRNA | all methanogens, Halobacterium spp., Pyrococcus spp., Sulfolobus spp., Homo sapiens, Thermofilum spp., Pyrobaculum spp. |
| MICR#1 | | 16S rRNA | Microcystis spp. |
| MICR#2 | | 16S rRNA | Microcystis aeruginosa NIVA-CYA 143, 57, 228/1, 43, 123/1, 31, 166, M. cf. ichthyoblabe, NIVA-CYA 279, M. cf. wesenbergii NIVA-CYA 172/5, M. viridis NIVA-CYA 122/2 |
| MICR#3 | | 16S rRNA | Microcystis spp. |
| Mlb482 | S-G-gMlb-0482-a-A-23 | 16S rRNA | Methylobacter spp. |
| Mlb662 | S-G-gMlb-0662-a-A-22 | 16S rRNA | Methylobacter spp. |
| Mlc123 | S-G-gMlc-0123-a-A-22 | 16S rRNA | Methylococcus spp. |
| Mlc1436 | S-G-gMlc-1436-a-A-24 | 16S rRNA | Methylococcus spp. |
| Mlm482 | S-G-gMlm-0482-a-A-23 | 16S rRNA | Methylomonas spp. |
| Mlm732a | S-G-gMlm-0732-a-A-19 | 16S rRNA | Methylomonas group A |
| Mlm732b | S-G-gMlm-0732-b-A-19 | 16S rRNA | Methylomonas group C |
| Mmb1007 | S-G-gMmb-1007-a-A-20 | 16S rRNA | Methylomicrobium |
| Mmb482 | S-G-gMmb-0482-a-A-23 | 16S rRNA | Methylomicrobium |
| Mplu464 | | 16S rRNA | Melissococcus pluton |
| MS1 | | 16S rRNA | Methanothrix soehngenii, Methanosaeta concilii |
| MS1414 | | 16S rRNA | Methanosarcina spp., Methanococcoides spp., Methanolobus spp., Methanohalophilus spp. |
| MS2 | | 16S rRNA | Methanothrix soehngenii, Methanosaeta concilii |
| MS5 | | 16S rRNA | Methanothrix soehngenii, Methanosaeta concilii, Methanothrix sp. strain CALS-1, Methanothrix sp. strain PTT, Methanosaeta thermoacetophila |
| MS821 | S-G-Msar-0821-a-A-24 | 16S rRNA | Methanosarcina frisius, Methanosarcina spp., Methanosarcina acidovorans, Methanosarcina thermophila, Methanosarcina barkeri, Methanoholophilus mahii, Methanophilus sp. |
| MSMX860 | | 16S rRNA | Methanosarcina spp., Methanococcoides spp., Methanolobus spp., Methanohalophilus spp., Methanosaeta spp. |
| MX825 | | 16S rRNA | Methanosaeta spp. |
| Myb736a | S-*-Myb-0736-a-A-22 | 16S rRNA | Mycobacterium complex |
| Myb736b | S-*-Myb-0736-b-A-22 | 16S rRNA | Mycobacterium complex |
| NAL1208 | | 16S rRNA | Nevskia clones NO2 and NO11, Mycoplana bullata, Brevundimonas diminuta |
| NAL657 | | 16S rRNA | Nevskia clones NO2 and NO11 |
| NB1000 | S-G-Nbac-1000-a-A-15 | 16S rRNA | Nitrobacter spp. |
| NEV177 | | 16S rRNA | Nevskia ramosa |
| NEV656 | | 16S rRNA | Nevskia ramosa |
| NIT3 | S-G-Nbac-1035-a-A-18 | 16S rRNA | Nitrobacter spp. |
| NmV (Ncmob) | S-S-Nmob-0174-a-A-18 | 16S rRNA | Nitrosococcus mobilis (Nitrosomonas) lineage |
| NONEUB (NON338) (non-Bact338) | | 16S rRNA | control probe complementary to EUB338 |
| NOSTOC | | 16S rRNA | genera Nostoc, Aphanizomenon, and Anabaena |
| Nscoc128 | S-*-Nscoc-128-a-A-18 | 16S rRNA | Nitrosococcus oceani, N. halophilus (Gammaproteobacteria) |
| Nse1472 | S-*-Nse-1472-a-A-18 | 16S rRNA | Nitrosomonas europea, N. halophila, N. eutropha, Kraftisried-Isolat Nm103 |
| Nsm156 | S-G-Nsm-0155-a-A-19 | 16S rRNA | Nitrosomonas spp., Nitrosococcus mobilis |
| Nso1225 | S-F-bAOB-1224-a-A-20 | 16S rRNA | Betaproteobacterial ammonia-oxidizing bacteria |
| Nso190 | S-F-bAOB-0189-a-A-19 | 16S rRNA | Betaproteobacterial ammonia-oxidizing bacteria |
| Nsv443 | | 16S rRNA | Nitrosospira spp. |
| Ntcoc84 | S-*-Ntcoc-84-a-A-18 | 16S rRNA | Nitrococcus mobilis |
| Ntspa1026 | S-*-Ntspa-1026-a-A-18 | 16S rRNA | Nitrospira moscoviensis, activated sludge clones A4 and A11 |
| Ntspa662 | S-G-Ntspa-662-a-A-18 | 16S rRNA | genus Nitrospira |
| Ntspa712 | S-*-Ntspa-712-a-A-21 | 16S rRNA | most members of the phylum Nitrospirae |
| Ntspn693 | S-*-Ntspn-693-a-A-20 | 16S rRNA | Nitrospina gracilis |
| OTU1-1415 | S-*-OTU1-1415-a-A-20 | 16S rRNA | Zoogloea ramigera, activated sludge clones A16, H7, H10, H11, H13, H22, H27. H40, S21 |
| OTU14-129 | S-*-OTU14-0129-a-A-20 | 16S rRNA | Hyphomicrobium spp., activated sludge clones A7b, A39 |
| OTU16-1027 | S-*-OTU16-1027-a-A-18 | 16S rRNA | activated sludge clones H4, H6, H29, S7 |
| OTU16-1350 | S-*-OTU16-1350-a-A-18 | 16S rRNA | activated sludge clones H4, H6, H29, S7 |
| OTU17-66 | S-*-OTU17-0066-a-A-20 | 16S rRNA | activated sludge clones H46, S43 |
| OTU2-132 (ATDe132) | S-*-ATDe-0132-a-A-18 | 16S rRNA | Activated sludge clones A33, H25, H30, H35, S3, S10, and S23 of the Azoarcus-Thauera-Denitromonas lineage |
| OTU2-467 | S-*-OTU2-0467-a-A-20 | 16S rRNA | activated sludge clones A33, H25, H30, H35, S3, S10, S23 |
| OTU25to31-1406 | S-*-OTU25to31-1406-a-A-18 | 16S rRNA | some Anaerolineae |
| OTU26-650 | S-*-OTU26-0650-a-A-18 | 16S rRNA | activated sludge clones A11b, A30, H1, H19 |
| OTU28-1346 | S-*-OTU28-1346-a-A-18 | 16S rRNA | activated sludge clones H39, S41 |
| STEBA1426 | S-*-Steba-1426-a-A-18 | 16S rRNA | Some members of the Sterolibacterium lineage |
| OTU31-656 | S-*-OTU31-0656-a-A-18 | 16S rRNA | activated sludge clones H8, S9 |
| OTU32-208 | S-*-OTU32-0208-a-A-18 | 16S rRNA | activated sludge clones A31, S47 |
| OTU32-630 | S-*-OTU32-0630-a-A-18 | 16S rRNA | activated sludge clones A31, S47 |
| OTU3-445 | S-*-OTU3-0445-a-A-20 | 16S rRNA | activated sludge clones A13, H12, H20, H23, S28, S40 |
| OTU43/44-360 | S-*-OTU43/44-0360-a-A-18 | 16S rRNA | Acidobacteria group a, activated sludge clones A22, A34, H3 |
| OTU45-720 | S-*-OTU45-0720-a-A-20 | 16S rRNA | activated sludge clones H44 and S6, soil clone C105, soil clone 11-25, Antarctic lake ice clone LB3-30 |
| OTU4-645 | S-*-OTU4-0645-a-A-18 | 16S rRNA | Alcaligenes latus, activated sludge clones A2, A26b |
| OTU6-178 | S-*-OTU6-0178-a-A-18 | 16S rRNA | Brachymonas denitrificans, activated sludge clone A6b |
| PAR1244 | S-G-Parc-1244-a-A-19 | 16S rRNA | genus Paracoccus |
| PAR1457 | S-G-Parc-1457-a-A-18 | 16S rRNA | genus Paracoccus |
| PAR651 | S-G-Parc-0651-a-A-18 | 16S rRNA | genus Paracoccus |
| Pdv1031 | | 16S rRNA | Paracoccus denitrificans, P. versutus |
| Pdv198 | | 16S rRNA | Paracoccus denitrificans, P. versutus |
| PHORM | | 16S rRNA | Phormidium spp |
| PLA46 | S-P-Planc-0046-a-A-18 | 16S rRNA | Planctomycetales |
| PLA886 | S-P-Planc-0886-a-A-19 | 16S rRNA | Planctomycetes |
| PLAN#1 | | 16S rRNA | Planktothrix |
| PLAN#2 | | 16S rRNA | Planktothrix |
| Ppu56a | | 23S rRNA | Pseudomonas putida, P. mendocina |
| PS-1 | | 16S rRNA | Leptothrix spp., Sphaerotilus natans ATCC 29329 |
| PS56a | | 23S rRNA | most true Pseudomonas spp. |
| Ps-Ag1 | | 23S rRNA | Pseudomonas fluorescens Ag1 |
| PSP-6 | | 16S rRNA | Leptothrix discophora SP-6, L. cholodnii CCM1827, Leptothrix sp. strain NC-1 |
| S.bry181 | S-S-S.bry-0181-a-A-21 | 16S rRNA | Syntrophomonas bryantii |
| S.sap181 | S-S-S.sap-0181-a-A-20 | 16S rRNA | Syntrophomonas sapovorans |
| S.wol180 | S-S-S.wol-0180-a-A-21 | 16S rRNA | Syntrophomonas wolfei subsp. wolfei, S. wolfei strain LYB |
| SARCI551 | S-G-Sarci-0551-a-A-20 | 16S rRNA | genus Methanosarcina |
| SARCI645 | S-G-Sarci-0645-a-A-19 | 16S rRNA | genus Methanosarcina |
| SRB385 (SRB) | S-*-Srb-0385-a-A-18 | 16S rRNA | Most Desulfovibrionales and other Bacteria |
| SRB385Db | | 16S rRNA | Desulfobacterales, Desulfuromonales, Syntrophobacterales, Myxococcales, and other Bacteria |
| ssp. succinogenes | | 16S rRNA | Fibrobacter succinogenes subsp. succinogenes (Bacteroides succinogenes S85 and A3c) |
| SSU1029 | | 16S rRNA | Streptococcus suis |
| SUBU1237 | | 16S rRNA | Burkholderia spp., Sutterella spp. |
| succinogenes | | 16S rRNA | Fibrobacter succinogenes |
| Sval428 | | 16S rRNA | Some Desulfobulbaceae (excluding most Desulfobulbus |
| SYN835 | | 16S rRNA | Syntrophobacter, Desulforhabdus |
| Synm126 | S-G-Synm-0126-a-A-19 | 16S rRNA | Syntrophomonas sapovorans, S. wolfei subsp. wolfei, S. wolfei strain LYB |
| Synm700 | S-F-Synm-0700-a-A-23 | 16S rRNA | mesophilic members of the family Syntrophomonadaceae |
| Tbcil832 | S-*-Tbcil-0832-a-A-18 | 16S rRNA | thermophilic Bacillus spp. |
| TDEN | | 16S rRNA | Treponema denticola |
| Tha09 | | 23S rRNA | Tetragenococcus halophilus |
| Thio820 | S-S-Thio-0820-a-A-22 | 16S rRNA | Thiobacillus thiooxidans, T. ferrooxidans |
| Thus438 | S-G-Thus-0438-a-A-18 | 16S rRNA | Thermus spp. |
| TMAL | | 16S rRNA | Treponema maltophilum |
| TPEC | | 16S rRNA | Treponema pectinovorum |
| TRE I | | 16S rRNA | oral Treponema spp. group I |
| TRE II | | 16S rRNA | oral Treponema spp. group II |
| TRE III | | 16S rRNA | oral Treponema spp. group III |
| TRE IV | | 16S rRNA | oral Treponema spp. group IV |
| TRE V | | 16S rRNA | oral Treponema spp. group V |
| TRE VI | | 16S rRNA | oral Treponema spp. group VI |
| TRE VII | | 16S rRNA | oral Treponema spp. group VII |
| TSOC | | 16S rRNA | Treponema socranskii |
| Ttoga660 | S-*-Ttoga-0660-a-A-18 | 16S rRNA | Thermotogales |
| TVIN | | 16S rRNA | Treponema vincentii |
| UNIV1390 | S-*-Univ-1390-a-A-18 | 16S rRNA | all Organisms |
| UNIVER | | 16S rRNA | all Bacteria |
| XAN818 | | 16S rRNA | Xanthomonas branch |
| ZAL | | 16S rRNA | Zoogloea ramigera ATCC 19623 |
| ZBE | | 16S rRNA | Zoogloea ramigera ATCC 25935 |
| ZRA23a (ZRA,ZOGLO647) | S-*-Zoglo-0647-a-A-18 | 16S rRNA | Most members of the Zoogloea lineage, not Z. resiniphila |
| CC23a | | 16S rRNA | Caedibacter caryophilus (C. caryophyla) and other Caedibacter-related endosymbionts of Acanthamoeba spp. |
| PcaeC9 | S-S-PcaeC9-217-a-A-18 | 16S rRNA | Candidatus Paracaedibacter acanthamoebae (endosymbiont of Acanthamoeba sp. UWC9) |
| PcaeE39 | S-S-PcaeE339-217-a-A-18 | 16S rRNA | Candidatus Paracaedibacter symbiosus (endosymbiont of Acanthamoeba sp. UWE39) |
| CaeAc998 | S-S-CaeAc-998-a-A-18 | 16S rRNA | Candidatus Caedibacter acanthamoebae (endosymbiont of Acanthamoeba polyphaga HN-3) |
| Mg705 | | 16S rRNA | type I methanotrophs |
| Mg84 | | 16S rRNA | type I methanotrophs |
| Ma450 | | 16S rRNA | type II methanotrophs (Methylosinus/Methylocystis spp.) |
| Ma464 | | 16S rRNA | type II methanotrophs |
| Mg669 | | 16S rRNA | Methylobacter spp., Methylomonas spp. |
| Mg1004 | | 16S rRNA | Methylomicrobium |
| Mg983 | | 16S rRNA | type I methanotrophs |
| Mg993 | | 16S rRNA | type I methanotrophs |
| Stemal | | 16S rRNA | Stenotrophomonas maltophilia |
| Burcep | | 16S rRNA | Burkholderia cepacia |
| Burkho | | 16S rRNA | Burkholderia spp. |
| Haeinf | | 16S rRNA | Haemophilus influenzae |
| Sau | | 16S rRNA | Staphylococcus aureus |
| Spn | | 16S rRNA | Streptococcus pneumoniae |
| Ent | | 16S rRNA | Enterobacteriaceae except Proteus spp. |
| Kpn | | 23S rRNA | Klebsiella pneumoniae |
| Caal | | 18S rRNA | Candida albicans |
| Cagl | | 18S rRNA | Candida (Torulopsis) glabrata |
| Ckrus | | 18S rRNA | Candida krusei |
| Cpara651 (Cpara) | | 18S rRNA | Candida parapsilosis |
| PF2 | | 18S rRNA | all yeasts |
| Str | | 16S rRNA | Streptococcus spp. |
| Spy | | 16S rRNA | Streptococcus pyogenes |
| Saga | | 16S rRNA | Streptococcus agalactiae |
| Hpy-1 | | 16S rRNA | Helicobacter pylori |
| ClaR1 | | 23S rRNA | clarithromycin resistant Helicobacter pylori |
| ClaR2 | | 23S rRNA | clarithromycin resistant Helicobacter pylori |
| ClaR3 | | 23S rRNA | clarithromycin resistant Helicobacter pylori |
| ClaWT | | 23S rRNA | Helicobacter pylori (clarithromycin sensitve) |
| ATE | | 23S rRNA | Aureobacterium testaceum |
| BKE | | 23S rRNA | Brevibacterium sp. (B. ketoglutamicum) |
| CGL | | 23S rRNA | Corynebacterium glutamicum |
| Pst67 | | 16S rRNA | Pseudomonas stutzeri, P. mendocina |
| Pst997 | | 16S rRNA | Pseudomonas stutzeri |
| Pae997 | | 16S rRNA | Pseudomonas spp. |
| ACI208 | | 16S rRNA | Acidovorax spp. |
| COM1424 | | 16S rRNA | Comamonas spp. |
| Ps | | 23S rRNA | Pseudomonas spp. |
| Ppu | | 23S rRNA | Pseudomonas spp. |
| Pce | | 23S rRNA | Burkholderia spp. |
| Pdi | | 16S rRNA | Brevundimonas (Pseudomonas) diminuta, Caulobacter spp., Mycoplana bullata |
| Cte | | 16S rRNA | Comamonas spp., Acidovorax spp., Hydrogenophaga spp., Aquaspirillum spp. |
| PPC | | 16S rRNA | Burkholderia spp., Sutterella wadsworthia |
| PSM G | | 16S rRNA | Pseudomonas spp. |
| PPT | | 16S rRNA | Comamonas spp., Acidovorax spp., Hydrogenophaga spp., Aquaspirillum spp. |
| NEU | S-*-Nsm-0651-a-A-18 | 16S rRNA | Most halophilic and halotolerant Nitrosomonas spp. |
| PseaerA | | 16S rRNA | Pseudomonas aeruginosa |
| PseaerA | | 23S rRNA | Pseudomonas aeruginosa |
| 10 | | 16S rRNA | Bacillus medusa, B. thuringiensis |
| 11 | | 16S rRNA | Bacillus medusa, B. thuringiensis |
| 12 | | 16S rRNA | Bacillus medusa, B. thuringiensis |
| 13 | | 16S rRNA | Bacillus medusa, B. thuringiensis |
| 14 | | 16S rRNA | Bacillus mycoides |
| 15 | | 16S rRNA | Bacillus mycoides |
| 16 | | 16S rRNA | Bacillus mycoides |
| 17 | | 16S rRNA | Bacillus mycoides |
| 18 | | 16S rRNA | Bacillus anthracis, B. cereus |
| 19 | | 16S rRNA | Bacillus anthracis, B. cereus |
| 20 | | 16S rRNA | Bacillus anthracis, B. cereus |
| 21 | | 16S rRNA | Anthracis group including Bacillus anthracis, B. cereus, B. medusa, B. thuringiensis |
| 22 | | 16S rRNA | Anthracis group including Bacillus anthracis, B. cereus, B. medusa, B. thuringiensis |
| 23 | | 16S rRNA | Anthracis group including Bacillus anthracis, B. cereus, B. medusa, B. thuringiensis |
| 24 | | 16S rRNA | Bacillus subtilis |
| 25 | | 16S rRNA | Bacillus subtilis |
| 26 | | 16S rRNA | Bacillus subtilis |
| 27 | | 16S rRNA | Bacillus subtilis |
| 28 | | 16S rRNA | Subtilis group including Bacillus subtilis, B. amyloliquefaciens, B. polilliae, B. pumilus, B. licheniformis |
| 29 | | 16S rRNA | Subtilis group including Bacillus subtilis, B. amyloliquefaciens, B. polilliae, B. pumilus, B. licheniformis |
| 30 | | 16S rRNA | Subtilis group including Bacillus subtilis, B. amyloliquefaciens, B. polilliae, B. pumilus, B. licheniformis |
| Amx1900 | L-*-Amx-1900-a-A-21 | 23S rRNA | anaerobic ammonium-oxidizing bacteria, Candidatus `Brocadia anammoxidansapos and Candidatus `Kuenenia stuttgartiensisapos |
| Kst157 | S-S-Kst-0157-a-A-18 | 16S rRNA | Candidatus Kuenenia stuttgartiensis |
| Ban162 (B. anam.) | S-S-Ban-0162(B. anam.)-a-A-18 | 16S rRNA | Candidatus Brocadia anammoxidans |
| Amx820 | S-*-Amx-0820-a-A-22 | 16S rRNA | anaerobic ammonium-oxidizing bacteria, Candidatus `Brocadia anammoxidansapos and Candidatus `Kuenenia stuttgartiensisapos |
| VaV3 | | 16S rRNA | Vibrio anguillarum |
| Syb701 | S-*-MUG28-0701-a-A-20 | 16S rRNA | clone MUG28 |
| GNSB633 | S-*-GNSB-0633-a-A-20 | 16S rRNA | green nonsulfur clones MUG9, TUG8, TUG9, TUG10 |
| RAL196 | | 16S rRNA | Ruminococcus albus |
| RFL196 | | 16S rRNA | Ruminococcus flavefaciens FD-1 |
| RAL1176 | | 16S rRNA | Ruminococcus albus |
| RFL1176 | | 16S rRNA | Ruminococcus flavefaciens |
| RAL1269 | | 16S rRNA | Ruminococcus albus |
| RFL1269 | | 16S rRNA | Ruminococcus flavefaciens |
| DHP 1006 | | 16S rRNA | Synergistes jonesii |
| DHP 1017 | | 16S rRNA | Synergistes jonesii |
| PAD | | 16S rRNA | Bifidobacterium adolescentis |
| PBI | | 16S rRNA | Bifidobacterium bifidum |
| PBR | | 16S rRNA | Bifidobacterium breve |
| PIN | | 16S rRNA | Bifidobacterium infantis |
| PLO | | 16S rRNA | Bifidobacterium longum |
| SPN3 | | 16S rRNA | Shewanella putrefaciens |
| V3VV | | 16S rRNA | Vibrio vulnificus |
| UNIV1389a | S-D-Univ-1389-a-A-18 | 16S rRNA | Bacteria, not Epsilonproteobacteria |
| UNIV1389b | S-D-Univ-1389-b-A-18 | 18S rRNA | Eucarya |
| UNIV1389c | S-D-Univ-1389-c-A-18 | 16S rRNA | Archaea |
| ARCH917 | S-D-Arch-0917-a-A-18 | 16S rRNA | Archaea |
| DELTA495a | S-C-dProt-0495-a-A-18 | 16S rRNA | Most Deltaproteobacteria and most Gemmatimonadetes |
| DELTA495b | S-*-dProt-0495-b-A-18 | 16S rRNA | some Deltaproteobacteria |
| DELTA495c | S-*-dProt-0495-c-A-18 | 16S rRNA | some Deltaproteobacteria |
| NTSPA714 | S-*-Ntspa-714-a-A-18 | 16S rRNA | Phylum Nitrospira, not Thermodesulfovibrio islandicus |
| DSB706 | S-*-Dsb-0706-a-A-18 | 16S rRNA | Most Desulfobulbaceae and Thermodesulforhabdus |
| DSB230 | S-*-Dsb-0230-a-A-18 | 16S rRNA | Desulfotalea-Desulforhopalus-Desulfocapsa-Desulfofustis lineage |
| DSTAL131 | S-G-Dstal-0131-a-A-18 | 16S rRNA | Desulfotalea spp. |
| DSTAL213 | S-G-Dstal-0213-a-A-18 | 16S rRNA | Desulfotalea spp. |
| DSTAL645 | S-G-Dstal-0645-a-A-18 | 16S rRNA | Desulfotalea spp. |
| DSTAL732 | S-G-Dstal-0732-a-A-18 | 16S rRNA | Desulfotalea spp. |
| DSTAL835 | S-G-Dstal-0835-a-A-18 | 16S rRNA | Desulfotalea spp. |
| DSRHP185 | S-*-Dsrhp-0185-a-A-18 | 16S rRNA | Desulforhopalus spp. |
| DSBB228 | S-G-Dsbb-0228-a-A-18 | 16S rRNA | Desulfobulbus spp. |
| DSBB660 | S-G-Dsbb-0660-a-A-18 | 16S rRNA | Desulfobulbus spp. |
| DSB986 | S-*-Dsb-0986-a-A-18 | 16S rRNA | Desulfobacter spp., Desulfobacula sp., Desulfobacterium sp., Desulfospira sp., Desulfotignum sp. |
| DSB1030 | S-*-Dsb-1030-a-A-18 | 16S rRNA | Desulfobacter spp., Desulfobacula sp., Desulfobacterium sp., Desulfospira sp., Desulfotignum sp. |
| DSB1240 | S-*-Dsb-1240-a-A-18 | 16S rRNA | Desulfobacter spp., Desulfotignum sp. |
| DSB623a | S-*-Dsb-0623-a-A-18 | 16S rRNA | Desulfobacter curvatus, Dsb. halotolerans, Dsb. hydrogenophilus, Dsb. postgatei, Dsb. Vibrioformis |
| DSB623b | S-*-Dsb-0623-b-A-18 | 16S rRNA | Desulfobacter sp. BG8, Dsb. sp. BG23 |
| DSBLA623 | S-S-Dsb.la-0623-a-A-18 | 16S rRNA | Desulfobacter latus |
| DSBACL143 | S-G-Dsbacl-0143-a-A-18 | 16S rRNA | Desulfobacula spp. |
| DSBACL225 | S-G-Dsbacl-0225-a-A-18 | 16S rRNA | Desulfobacula spp. |
| DSBACL317 | S-G-Dsbacl-0317-a-A-18 | 16S rRNA | Desulfobacula spp. |
| DSBACL1268 | S-G-Dsbacl-1268-a-A-18 | 16S rRNA | Desulfobacula spp. |
| DSBACL1434 | S-G-Dsbacl-1434-a-A-18 | 16S rRNA | Desulfobacula spp. |
| DSB674 | S-*-Dsb-0674-a-A-18 | 16S rRNA | Desulfofrigus spp., Desulfofaba gelida, Desulfomusa hansenii |
| DSB220 | S-*-Dsb-0220-a-A-18 | 16S rRNA | Desulfobacterium niacini, Dsbm. vacuolatum, Dsbm. autotrophicum, Desulfofaba gelida |
| DSBM1239 | S-*-Dsbm-1239-a-A-18 | 16S rRNA | Desulfobacterium niacini, Dsbm. vacuolatum, Dsbm. autotrophicum |
| DSFRG211 | S-G-Dsfrg-0211-a-A-18 | 16S rRNA | Desulfofrigus spp. |
| DSFRG445 | S-G-Dsfrg-0445-a-A-18 | 16S rRNA | Desulfofrigus spp. |
| DSFRG1030 | S-G-Dsfrg-1030-a-A-18 | 16S rRNA | Desulfofrigus spp. |
| DSSDBM194 | S-*-DssDbm-0194-a-A-18 | 16S rRNA | Desulfosarcina variabilis, Desulfobacterium cetonicum |
| DSSDBM217 | S-*-DssDbm-0217-a-A-18 | 16S rRNA | Desulfosarcina variabilis, Desulfobacterium cetonicum |
| DSSDBM998 | S-*-DssDbm-0998-a-A-18 | 16S rRNA | Desulfosarcina variabilis, Desulfobacterium cetonicum |
| DSSDBM1286 | S-*-DssDbm-1286-a-A-18 | 16S rRNA | Desulfosarcina variabilis, Desulfobacterium cetonicum |
| DSBMIN218 | S-S-Dsbm.in-0218-a-A-18 | 16S rRNA | Desulfobacterium indolicum |
| DSNISH179 | S-S-Dsn.ish-0179-a-A-18 | 16S rRNA | Desulfonema ishimotonii |
| DSNISH442 | S-S-Dsn.ish-0442-a-A-18 | 16S rRNA | Desulfonema ishimotonii |
| DSNISH1001 | S-S-Dsn.ish-1001-a-A-18 | 16S rRNA | Desulfonema ishimotonii |
| DSN658 | S-*-Dsn-0658-a-A-18 | 16S rRNA | Desulfonema limicola, Dsn. magnum |
| DSBOSA445 | S-S-Dsbo.sa-0445-a-A-18 | 16S rRNA | Desulfobotulus sapovorans |
| DSMON95 | S-*-Dsmon-0095-a-A-18 | 16S rRNA | Desulfomonile spp. |
| DSMON1421 | S-*-Dsmon-1421-a-A-18 | 16S rRNA | Desulfomonile spp. |
| SYBAC986 | S-*-Sybac-0986-a-A-18 | 16S rRNA | Desulfovirga spp., Desulforhabdus spp., Syntrophobacter spp. |
| DSACI175 | S-G-Dsaci-0175-a-A-18 | 16S rRNA | Desulfacinum spp. |
| DSACI207 | S-G-Dsaci-0207-a-A-18 | 16S rRNA | Desulfacinum spp. |
| TDRNO448 | S-S-Tdr.no-0448-a-A-18 | 16S rRNA | Thermodesulforhabdus norvegica |
| TDRNO1030 | S-S-Tdr.no-1030-a-A-18 | 16S rRNA | Thermodesulforhabdus norvegica |
| TDRNO1443 | S-S-Tdr.no-1443-a-A-18 | 16S rRNA | Thermodesulforhabdus norvegica |
| DSV686 | S-*-Dsv-0686-a-A-18 | 16S rRNA | Most Desulfovibrionales and Desulfuromonadales |
| DSV698 | S-*-Dsv-0698-a-A-18 | 16S rRNA | Desulfovibrio caledoniensis, Dsv. dechloracetivorans, Dsv. profundus, Dsv. aespoeensis, Dsv. halophilus, Dsv. gracilis, Dsv. longus, Dsv. salexigens, Dsv. zosterae, Dsv. bastinii, Dsv. fairfieldensis, Dsv. intestinalis, Dsv. piger, Dsv. desulfuricans, Dsv |
| DVDAPC872 | S-*-Dv.d.a.p.c-0872-a-A-18 | 16S rRNA | Desulfovibrio caledoniensis, Dsv. dechloracetivorans, Dsv. profundus, Dsv.aespoeensis |
| DVHO130 | S-*-Dv.h.o-0130-a-A-18 | 16S rRNA | Desulfovibrio halophilus, Dsv. oxyclinae |
| DVHO733 | S-*-Dv.h.o-0733-a-A-18 | 16S rRNA | Desulfovibrio halophilus, Dsv. oxyclinae |
| DVHO831 | S-*-Dv.h.o-0831-a-A-18 | 16S rRNA | Desulfovibrio halophilus, Dsv. oxyclinae |
| DVHO1424 | S-*-Dv.h.o-1424-a-A-18 | 16S rRNA | Desulfovibrio halophilus, Dsv. oxyclinae |
| DVAA1111 | S-*-Dv.a.a-1111-a-A-18 | 16S rRNA | Desulfovibrio africanus, Dsv. aminophilus |
| DVGL199 | S-*-Dv.g.l-0199-a-A-18 | 16S rRNA | Desulfovibrio gracilis, Dsv. longus |
| DVGL445 | S-*-Dv.g.l-0445-a-A-18 | 16S rRNA | Desulfovibrio gracilis, Dsv. longus |
| DVGL1151 | S-*-Dv.g.l-1151-a-A-18 | 16S rRNA | Desulfovibrio gracilis, Dsv. longus |
| DVGL1421 | S-*-Dv.g.l-1421-a-A-18 | 16S rRNA | Desulfovibrio gracilis, Dsv. longus |
| DSV820 | S-*-Dsv-0820-a-A-18 | 16S rRNA | Desulfovibrio salexigens, Dsv. zosterae, Dsv. fairfieldensis, Dsv. intestinalis, Dsv. piger, Dsv. desulfuricans |
| DVSZ849 | S-*-Dv.s.z-0849-a-A-18 | 16S rRNA | Desulfovibrio salexigens, Dsv. zosterae |
| DVIG448 | S-*-Dv.i.g-0448-a-A-18 | 16S rRNA | Desulfovibrio gabonensis, Dsv. indonesiensis |
| DVIG468 | S-*-Dv.i.g-0468-a-A-18 | 16S rRNA | Desulfovibrio gabonensis, Dsv. indonesiensis |
| DSV651 | S-*-Dsv-0651-a-A-18 | 16S rRNA | Desulfovibrio fructosivorans, Dsv. alcoholivorans, Dsv. sulfodismutans, Dsv. burkinensis, Dsv. inopinatus |
| DVFABS153 | S-*-Dv.f.a.b.s-0153-a-A-18 | 16S rRNA | Desulfovibrio fructosivorans, Dsv. alcoholivorans, Dsv. sulfodismutans, Dsv. burkinensis |
| DVFABS653 | S-*-Dv.f.a.b.s-0653-a-A-18 | 16S rRNA | Desulfovibrio fructosivorans, Dsv. alcoholivorans, Dsv. sulfodismutans, Dsv. burkinensis |
| DVFABS1351 | S-*-Dv.f.a.b.s-1351-a-A-18 | 16S rRNA | Desulfovibrio fructosivorans, Dsv. alcoholivorans, Dsv. sulfodismutans, Dsv. burkinensis |
| DVLVT139 | S-*-Dv.l.v.t-0139-a-A-18 | 16S rRNA | Desulfovibrio termitidis, Dsv. longreachensis, Dsv. vulgaris |
| DVLVT175 | S-*-Dv.l.v.t-0175-a-A-18 | 16S rRNA | Desulfovibrio termitidis, Dsv. longreachensis, Dsv. vulgaris |
| DVLT131 | S-*-Dv.l.t-0131-a-A-18 | 16S rRNA | Desulfovibrio termitidis, Dsv. longreachensis |
| DVLT986 | S-*-Dv.l.t-0986-a-A-18 | 16S rRNA | Desulfovibrio termitidis, Dsv. longreachensis |
| DVLT1027 | S-*-Dv.l.t-1027-a-A-18 | 16S rRNA | Desulfovibrio termitidis, Dsv. longreachensis |
| DSM194 | S-G-Dsm-0194-a-A-18 | 16S rRNA | Desulfomicrobium spp., Desulfobacterium macestii |
| DSM213 | S-G-Dsm-0213-a-A-18 | 16S rRNA | Desulfomicrobium |
| DSHRE830 | S-S-Dsh.re-0830-a-A-18 | 16S rRNA | Desulfohalobium retbaense |
| DSHRE995 | S-S-Dsh.re-0995-a-A-18 | 16S rRNA | Desulfohalobium retbaense |
| DSHRE1243 | S-S-Dsh.re-1243-a-A-18 | 16S rRNA | Desulfohalobium retbaense |
| DFMI227a | S-*-DfmI-0227-a-A-18 | 16S rRNA | Desulfotomaculum putei, Dfm. gibsoniae, Dfm. geothermicum, Dfm. thermosapovorans, Dfm. thermoacidovorans, Dfm. thermobenzoicum, Dfm. thermoacetoxidans, Dfm. australicum, Dfm. kuznetsovii, Dfm. thermocisternum, Dfm. luciae, Sporotomaculum hydroxybenzoicum |
| DFMI227b | S-*-DfmI-0227-b-A-18 | 16S rRNA | Desulfotomaculum aeronauticum, Dfm. nigrificans, Dfm. reducens, Dfm. ruminis, Dfm. sapomandens, Dfm. halophilum |
| DFMI210 | S-*-DfmI-0210-a-A-18 | 16S rRNA | some Desulfotomaculum spp. of clusters Ic and Id |
| DFMI229 | S-*-DfmI-0229-a-A-18 | 16S rRNA | some Desulfotomaculum spp. of clusters Ib, Ic, and Id |
| DFMIa641 | S-*-DfmIa-0641-a-A-18 | 16S rRNA | Desulfotomaculum spp. (cluster Ia) |
| DFMIb726 | S-*-DfmIb-0726-a-A-18 | 16S rRNA | Desulfotomaculum spp., Sporotomaculum spp. (cluster Ib) |
| DFMIc841 | S-*-DfmIc-0841-a-A-18 | 16S rRNA | Desulfotomaculum spp. (cluster Ic) |
| DFMIc1012 | S-*-DfmIc-1012-a-A-18 | 16S rRNA | Desulfotomaculum spp. (cluster Ic) |
| DFMIc1119 | S-*-DfmIc-1119-a-A-18 | 16S rRNA | Desulfotomaculum spp. (cluster Ic) |
| DFMIc1138 | S-*-DfmIc-1138-a-A-18 | 16S rRNA | Desulfotomaculum spp. (cluster Ic) |
| DFMId436 | S-*-DfmId-0436-a-A-18 | 16S rRNA | Desulfotomaculum spp. (cluster Id) |
| DFMId625 | S-*-DfmId-0625-a-A-18 | 16S rRNA | Desulfotomaculum spp. (cluster Id) |
| DFMId996 | S-*-DfmId-0996-a-A-18 | 16S rRNA | Desulfotomaculum spp. (cluster Id) |
| DFMId1117 | S-*-DfmId-1117-a-A-18 | 16S rRNA | Desulfotomaculum spp. (cluster Id) |
| DFACE199 | S-S-Df.ace-0199-a-A-18 | 16S rRNA | Desulfotomaculum spp. (cluster Ie) |
| DFACE438 | S-S-Df.ace-0438-a-A-18 | 16S rRNA | Desulfotomaculum spp. (cluster Ie) |
| DFACE995 | S-S-Df.ace-0995-a-A-18 | 16S rRNA | Desulfotomaculum spp. (cluster Ie) |
| DFACE1436 | S-S-Df.ace-1436-a-A-18 | 16S rRNA | Desulfotomaculum spp. (cluster Ie) |
| DFMIf126 | S-*-DfmIf-0126-a-A-18 | 16S rRNA | Desulfotomaculum spp. (cluster If) |
| DFMII1107 | S-*-DfmII-1107-a-A-18 | 16S rRNA | Desulfosporosinus spp., Desulfotomaculum auripigmentum (cluster II) |
| DFMII1281 | S-*-DfmII-1281-a-A-18 | 16S rRNA | Desulfosporosinus spp., Desulfotomaculum auripigmentum (cluster II) |
| TDSV601 | S-*-Tdsv-0601-a-A-18 | 16S rRNA | Thermodesulfovibrio spp. |
| Tdsulfo848 (TDSV849) | S-*-Tdsulfo-0848-a-A-18 (S-*-Tdsv-0849-a-A-18) | 16S rRNA | Most Thermodesulfovibrio and some Magnetobacterium |
| TDSV1326 | S-*-Tdsv-1326-a-A-18 | 16S rRNA | Thermodesulfovibrio spp. |
| TDSBM1282 | S-P-Tdsbm-1282-a-A-18 | 16S rRNA | Thermodesulfobacterium spp., Geothermobacterium sp. |
| TDSBM353 | S-*-Tdsbm-0353-a-A-18 | 16S rRNA | Thermodesulfobacterium spp. |
| TDSBM652 | S-*-Tdsbm-0652-a-A-18 | 16S rRNA | Thermodesulfobacterium spp. |
| ARGLO37 | S-G-Arglo-0037-a-A-18 | 16S rRNA | Archaeoglobus spp. |
| ARGLO276 | S-G-Arglo-0276-a-A-18 | 16S rRNA | Archaeoglobus spp. |
| ARGLO576 | S-G-Arglo-0576-a-A-18 | 16S rRNA | Archaeoglobus spp. |
| ARGLO972 | S-G-Arglo-0972-a-A-18 | 16S rRNA | Archaeoglobus spp. |
| 3 | | 16S rRNA | Universal |
| 6 | | 16S rRNA | Bacteria |
| 7 | | 16S rRNA | Bacteria |
| 8 | | 16S rRNA | Bacteria |
| 9 | | 16S rRNA | Bacteria |
| Bact1492 | S-D-Bact-1492-b-A-16 | 16S rRNA | most Bacteria |
| Bact1492 | S-D-Bact-1492-a-A-21 | 16S rRNA | most Bacteria |
| 1 | | 16S rRNA | Universal |
| 2 | | 16S rRNA | Universal |
| 5 | | 16S rRNA | Bacteria |
| Phasco741 | | 16S rRNA | Phascolarctobacterium faecium, Acidaminococcus fermentans, Succiniclasticum ruminis |
| Veil223 | | 16S rRNA | Veillonella dispar, Veillonella parvula, Veillonella atypica |
| Ehal1469 | | 16S rRNA | Eubacterium hallii, Clostridium herbivorans, Clostridium polysaccharolyticum |
| Lach571 | | 16S rRNA | Lachnospira multipara, Eubacterium eligens, Lachnospira pectinoschiza |
| Ecyl387 | | 16S rRNA | Eubacterium cylindroides, Clostridium innocuum, Eubacterium biforme, Eubacterium tortuosum, Eubacterium dolichum, Streptococcus pleomorphus |
| Rfla729 | S-*-Rfla-0729-a-A-18 | 16S rRNA | Ruminococcus albus, R. flavefaciens |
| Rbro730 | S-*-Rbro-0730-a-A-18 | 16S rRNA | Clostridium sporosphaeroides, Ruminococcus bromii, Clostridium leptum |
| RHC175a | S-*-RHC-0175-a-A-18 | 16S rRNA | Most members of the Dechloromonas-Ferribacterium-Quadricoccus-Azonexus, the Azospira, and the Rhodocyclus-Propionivibrio-Accumulibacter lineages |
| RHC439 | S-*-RHC-0439-a-A-18 | 16S rRNA | Rhodocyclus spp., most member of the Candidatus Accumulibacter cluster, Azospira lineage |
| RHW456 | S-G-Rhw-0456-a-A-18 | 16S rRNA | Bio-P enrichment culture clone R1 |
| RHW991 | S-G-Rhw-0991-a-A-18 | 16S rRNA | Bio-P enrichment culture clone R1 |
| RHX456 | S-G-Rhx-0456-a-A-17 | 16S rRNA | Candidatus Accumulibacter phosphatis (clone R6) |
| RHX991 | S-G-Rhx-0991-a-A-18 | 16S rRNA | Candidatus Accumulibacter phosphatis (clone R6) |
| AVI | | 16S rRNA | Enterococcus avium |
| ASI | | 16S rRNA | Enterococcus asini |
| CEC | | 16S rRNA | Enterococcus cecorum |
| COL | | 16S rRNA | Enterococcus columbae |
| CGF | | 16S rRNA | Enterococcus casseliflavus, E. gallinarum, E. flavescens |
| DUR | | 16S rRNA | Enterococcus durans |
| DIS | | 16S rRNA | Enterococcus dispar |
| FMDUR | | 16S rRNA | Enterococcus faecium, E. durans |
| HIR | | 16S rRNA | Enterococcus hirae |
| MAL | | 16S rRNA | Enterococcus malodoratus |
| MUN | | 16S rRNA | Enterococcus mundtii |
| PSE | | 16S rRNA | Enterococcus pseudoavium |
| RAF | | 16S rRNA | Enterococcus raffinosus |
| SAC | | 16S rRNA | Enterococcus sacharolyticus |
| SOL | | 16S rRNA | Enterococcus solitarius |
| SUL | | 16S rRNA | Enterococcus sulfureus |
| 842 | | 16S rRNA | Bdellovibrio spp. |
| MG-64 | | 16S rRNA | type I methanotrophs including Methylomonas spp., Methylomicrobium spp., Methylobacter spp., Methylococcus |
| MA-621 | | 16S rRNA | type II methanotrophs including Methylocystis spp., Methylosinus spp. |
| MA-221 | | 16S rRNA | type II methanotrophs including Methylocystis spp., Methylosinus spp. |
| Mc1029 | | 16S rRNA | Methylococcus spp. |
| Mmb1121 | | 16S rRNA | Methylomicrobium album BG8, M. agile A30 |
| Mb1125 | | 16S rRNA | Methylobacter capsulatus and M. bovis strains |
| Chlae-574 | S-F-Chlae-0574-a-A-18 | 16S rRNA | Chlamydiaceae |
| Chla-0232 | S-G-Chla-0232-A-18 | 16S rRNA | Chlamydia |
| Chlph-0583 | S-G-Chlph-0583-a-A-18 | 16S rRNA | Chlamydophila |
| Ct-0623 | S-S-Ct-0623-a-A-18 | 16S rRNA | Chlamydia trachomatis |
| Cpn-0214 | S-S-Cpn-0214-a-A-18 | 16S rRNA | Chlamydophila pneumoniae |
| Cpn-0974 | S-S-Cpn-0974-a-A-18 | 16S rRNA | Chlamydophila pneumoniae |
| Cps-1414 | S-S-Cps-1414-a-A-18 | 16S rRNA | “Chlamydophila psittaci” group including C. felis, C. abortus, and C. caviae |
| Cps-1353 | S-S-Cps-1353-a-A-18 | 16S rRNA | “Chlamydophila psittaci” group including C. felis, C. abortus, and C. caviae |
| Bn9-658 | | 16S rRNA | subgroup of the Parachlamydiaceae including Parachlamydia acanthamoebae (Hallaposs coccus),
endosymbionts of Acanthamoebae sp. UWE25 and UWE1 |
| ParaC-0658 | S-*-ParaC-0658-a-A-18 | 16S rRNA | subgroup of the Parachlamydiaceae including Neochlamydia hartmannellae, endosymbiont of Acanthamoeba sp. UWC22 |
| Ctaenio-998 | S-S-Ctaenio-998-a-A-18 | 16S rRNA | Caedibacter taeniospiralis |
| TM7305 | | 16S rRNA | subdivision 1 of candidate division TM7 |
| TM7905 | | 16S rRNA | candidate division TM7 |
| TM7522 | | 16S rRNA | candidate division TM7 |
| TM7567 | | 16S rRNA | candidate division TM7 |
| CHL 1851 | S-F-t1851-0592-a-A-20 | 16S rRNA | filamentous bacterium Eikelboom Type 1851 |
| Al | | 16S rRNA | Azospirillum lipoferum |
| Ai | | 16S rRNA | Azospirillum irakense |
| Aba | | 16S rRNA | Azospirillum brasiliense, A. amazonense |
| Enterbact D | | 16S rRNA | some members of the Enterobacteriaceae |
| Enterbact B | | 16S rRNA | some members of the Enterobacteriaceae and Vibrionaceae |
| ALT1413 | | 16S rRNA | Alteromonas, Colwellia |
| G Rb | | 16S rRNA | Rhodobacter, Roseobacter |
| G V | | 16S rRNA | Vibrio |
| NOR1-56 | | 16S rRNA | NOR1 lineage (Gammaproteobacteria) |
| NOR2-1453 | | 16S rRNA | NOR2 cluster group A (Gammaproteobacteria) |
| OCE232 | | 16S rRNA | Oceanospirillum |
| PSA184 | | 16S rRNA | Pseudoalteromonas, Colwellia |
| SAR86-1249 | | 16S rRNA | SAR 86 cluster |
| SPH120 | | 16S rRNA | Sphingomonas |
| Hypho-1241 | S-G-Hypho-1241-a-A-19 | 16S rRNA | Hyphomicrobium |
| HyphoC1-648 | S-S-HyphoC1-648-a-A-20 | 16S rRNA | Hyphomicrobium vulgare, H. hollandicum, H. aestuarii, H. zavarzinii |
| HyphoCII-654 | S-S-HyphoCII-654-a-A-18 | 16S rRNA | Hyphomicrobium denitrificans, H. methylovorum, H. facilis |
| Gam1019 | S-S-g-Prot-1019-a-A-18 | 16S rRNA | phosphate accumulating bacteria (Gammaproteobacteria) |
| Gam1278 | S-S-g-Prot-1278-a-A-20 | 16S rRNA | phosphate accumulating bacteria (Gammaproteobacteria) |
| PAO846 | S-S-Rhodo-0846-a-A-18 | 16S rRNA | Candidatus Accumulibacter phosphatis |
| actino-1011 | S-S-HGC-1011-a-A-19 | 16S rRNA | Tetrasphaera japonica, enhanced biological phosphorus removal clone Ebpr19, Ebpr20 (Actinobacteria) |
| NSR826 | | 16S rRNA | Nitrospira moscoviensis, freshwater Nitrospira spp. |
| NSR1156 | | 16S rRNA | Nitrospira moscoviensis, freshwater Nitrospira spp. |
| NSR447 | | 16S rRNA | Nitrospira spp. |
| MNP1 | | 16S rRNA | nocardioform actinomycetes |
| MLP | | 16S rRNA | Mycobacterium sp. SMKN23, Mycobacterium sp. SMKN22, (nocardioform actinomycetes) |
| DLP | | 16S rRNA | nocardioform actinomycete sp. |
| GLP1 | | 16S rRNA | Gordona sp. SMKN27, Gordona sp. SMKN12, Gordona sp. SMKN17, Gordona sp. SMKN14, (nocardioform actinomycetes) |
| GLP2 | | 16S rRNA | Gordona sp. SMKN29, Gordona sp. SMKN15, (nocardioform actinomycetes) |
| GLP3 | | 16S rRNA | nocardioform actinomycete sp. |
| E.bar1237 | S-S-E.bar-1237-a-A-18 | 16S rRNA | Eubacterium barkeri |
| E.bif462 | S-S-E.bif-0462-a-A-18 | 16S rRNA | Eubacterium biforme |
| E.con1122 | S-S-E.con-1122-a-A-20 | 16S rRNA | Eubacterium contortum |
| E.cyl461 | S-St-E.cyl-0461-a-A-18 | 16S rRNA | Eubacterium cylindroides |
| E.cyl466 | S-St-E.cyl-0466-a-A-18- | 16S rRNA | Eubacterium cylindroides |
| E.dol183 | S-S-E.dol-0183-a-A-18 | 16S rRNA | Eubacterium dolichum |
| E.had579 | S-S-E.had-0579-a-A-20 | 16S rRNA | Eubacterium hadrum (Anaerostipes hadrus) |
| E.len194 | S-S-E.len-0194-a-A-18 | 16S rRNA | Eubacterium lentum |
| E.lim1433 | S-S-E.lim-1433-a-A-18 | 16S rRNA | Eubacterium limosum E. callanderi |
| E.mon84 | S-S-E.mon-0084-a-A-18 | 16S rRNA | Eubacterium moniliforme |
| E.ven66 | S-S-E.ven-0066-a-A-18 | 16S rRNA | Eubacterium ventriosum |
| GSB-532 | S-F-GSB-532-a-A-15 | 16S rRNA | green sulfur bacteria, Chlorobiaceae |
| GSB-822 | S-F-GSB-822-a-A-19 | 16S rRNA | green sulfur bacteria, Chlorobiaceae |
| b-AO233 | | 16S rRNA | Betaproteobacterial ammonia-oxidizing bacteria |
| Nsp436 | | 16S rRNA | Nitrosospira spp. |
| NspCL1_249 | | 16S rRNA | Nitrosospira cluster 1 |
| NspCL2_458 | | 16S rRNA | Nitrosospira cluster 2 |
| NspCL3_454 | | 16S rRNA | Nitrosospira cluster 3 |
| NspCL4_446 | | 16S rRNA | Nitrosospira cluster 4 |
| Nmo254 | | 16S rRNA | Nitrosomonas |
| Nmo254a | | 16S rRNA | Nitrosomonas |
| NmoCL6a_205 | | 16S rRNA | Nitrosomonas cluster 6a |
| NmoCL6b_376 | | 16S rRNA | Nitrosomonas cluster 6b |
| NmoCL7_439 | | 16S rRNA | Nitrosomonas cluster 7 |
| BT-1 | | 16S rRNA | Bacteroides thetaiotaomicron ATCC 29148 GenBank no. (GI) 13537351 |
| BT-2 | | 16S rRNA | Bacteroides thetaiotaomicron ATCC 29148 GenBank no. (GI) 13537351 |
| BT-3 | | 16S rRNA | Bacteroides thetaiotaomicron ATCC 29148 GenBank no. (GI) 13537351 |
| BV-1 | | 16S rRNA | Bacteroides vulgatus ATCC 8482 GenBank no. (GI) 173916 |
| BV-2 | | 16S rRNA | Bacteroides vulgatus ATCC 8482 GenBank no. (GI) 173916 |
| BV-3 | | 16S rRNA | Bacteroides vulgatus ATCC 8482 GenBank no. (GI) 173916 |
| BF-1 | | 16S rRNA | Bacteroides fragilis ATCC 23745 GenBank no. (GI) 143964 |
| BF-2 | | 16S rRNA | Bacteroides fragilis ATCC 23745 GenBank no. (GI) 143964 |
| BF-3 | | 16S rRNA | Bacteroides fragilis ATCC 23745 GenBank no. (GI) 143964 |
| BD-1 | | 16S rRNA | Bacteroides distasonis ATCC 8503 GenBank no. (GI) 173915 |
| BD-2 | | 16S rRNA | Bacteroides distasonis ATCC 8503 GenBank no. (GI) 173915 |
| BD-3 | | 16S rRNA | Bacteroides distasonis ATCC 8503 GenBank no. (GI) 173915 |
| CC-1 | | 16S rRNA | Clostridium clostridiiforme ATCC 29084 GenBank no. (GI) 174147 |
| CC-2 | | 16S rRNA | Clostridium clostridiiforme ATCC 29084 GenBank no. (GI) 174147 |
| CC-3 | | 16S rRNA | Clostridium clostridiiforme ATCC 29084 GenBank no. (GI) 174147 |
| CL-1 | | 16S rRNA | Clostridium leptum ATCC 29065 GenBank no. (GI) 12655400 |
| CL-2 | | 16S rRNA | Clostridium leptum ATCC 29065 GenBank no. (GI) 12655400 |
| CL-3 | | 16S rRNA | Clostridium leptum ATCC 29065 GenBank no. (GI) 12655400 |
| FPR-1 | | 16S rRNA | Fusobacterium prausnitzii ATCC 27768 GenBank no. (GI) 695518 |
| FPR-2 | | 16S rRNA | Fusobacterium prausnitzii ATCC 27768 GenBank no. (GI) 695518 |
| FPR-3 | | 16S rRNA | Fusobacterium prausnitzii ATCC 27768 GenBank no. (GI) 695518 |
| PSP-1 | | 16S rRNA | Peptostreptococcus productus ATCC 27340 GenBank no. (GI) 3492809 |
| PSP-2 | | 16S rRNA | Peptostreptococcus productus ATCC 27340 GenBank no. (GI) 3492809 |
| PSP-3 | | 16S rRNA | Peptostreptococcus productus ATCC 27340 GenBank no. (GI) 3492809 |
| ROB-1 | | 16S rRNA | Ruminococcus obeum ATCC 29174 GenBank no. (GI) 854420 |
| ROB-2 | | 16S rRNA | Ruminococcus obeum ATCC 29174 GenBank no. (GI) 854420 |
| ROB-3 | | 16S rRNA | Ruminococcus obeum ATCC 29174 GenBank no. (GI) 854420 |
| RBR-1 | | 16S rRNA | Ruminococcus bromii ATCC 27255 GenBank no. (GI) 854409 |
| RBR-2 | | 16S rRNA | Ruminococcus bromii ATCC 27255 GenBank no. (GI) 854409 |
| RBR-3 | | 16S rRNA | Ruminococcus bromii ATCC 27255 GenBank no. (GI) 854409 |
| RCA-1 | | 16S rRNA | Ruminococcus callidus ATCC 27760 GenBank no. (GI) 854410 |
| RCA-2 | | 16S rRNA | Ruminococcus callidus ATCC 27760 GenBank no. (GI) 854410 |
| RCA-3 | | 16S rRNA | Ruminococcus callidus ATCC 27760 GenBank no. (GI) 854410 |
| RAL-1 | | 16S rRNA | Ruminococcus albus ATCC 27210 GenBank no. (GI) 854408 |
| RAL-2 | | 16S rRNA | Ruminococcus albus ATCC 27210 GenBank no. (GI) 854408 |
| RAL-3 | | 16S rRNA | Ruminococcus albus ATCC 27210 GenBank no. (GI) 854408 |
| BIL-1 | | 16S rRNA | Bifidobacterium longum ATCC 15707 GenBank no. (GI) 13276118 |
| BIL-2 | | 16S rRNA | Bifidobacterium longum ATCC 15707 GenBank no. (GI) 13276118 |
| BIL-3 | | 16S rRNA | Bifidobacterium longum ATCC 15707 GenBank no. (GI) 13276118 |
| BIA-1 | | 16S rRNA | Bifidobacterium adolescentis ATCC 15703 GenBank no. (GI) 13160574 |
| BIA-2 | | 16S rRNA | Bifidobacterium adolescentis ATCC 15703 GenBank no. (GI) 13160574 |
| BIA-3 | | 16S rRNA | Bifidobacterium adolescentis ATCC 15703 GenBank no. (GI) 13160574 |
| BIN-1 | | 16S rRNA | Bifidobacterium infantis ATCC 15697 GenBank no. (GI) 13276116 |
| BIN-2 | | 16S rRNA | Bifidobacterium infantis ATCC 15697 GenBank no. (GI) 13276116 |
| BIN-3 | | 16S rRNA | Bifidobacterium infantis ATCC 15697 GenBank no. (GI) 13276116 |
| EBI-1 | | 16S rRNA | Eubacterium biforme ATCC 27806 GenBank no. (GI) 174515 |
| EBI-2 | | 16S rRNA | Eubacterium biforme ATCC 27806 GenBank no. (GI) 174515 |
| EBI-3 | | 16S rRNA | Eubacterium biforme ATCC 27806 GenBank no. (GI) 174515 |
| EAE-1 | | 16S rRNA | Eubacterium aerofaciens ATCC 25986 GenBank no. (GI) 5030911 |
| EAE-2 | | 16S rRNA | Eubacterium aerofaciens ATCC 25986 GenBank no. (GI) 5030911 |
| EAE-3 | | 16S rRNA | Eubacterium aerofaciens ATCC 25986 GenBank no. (GI) 5030911 |
| LAA-1 | | 16S rRNA | Lactobacillus acidophilus ATCC 332 GenBank no. (GI) 175004 |
| LAA-2 | | 16S rRNA | Lactobacillus acidophilus ATCC 332 GenBank no. (GI) 175004 |
| LAA-3 | | 16S rRNA | Lactobacillus acidophilus ATCC 332 GenBank no. (GI) 175004 |
| ECO-1 | | 16S rRNA | Escherichia coli ATCC 25922 GenBank no. (GI) 7110561 |
| ECO-2 | | 16S rRNA | Escherichia coli ATCC 25922 GenBank no. (GI) 7110561 |
| ECO-3 | | 16S rRNA | Escherichia coli ATCC 25922 GenBank no. (GI) 7110561 |
| EFA-1 | | 16S rRNA | Enterococcus faecium ATCC 19434 GenBank no. (GI) 5578754 |
| EFA-2 | | 16S rRNA | Enterococcus faecium ATCC 19434 GenBank no. (GI) 5578754 |
| EFA-3 | | 16S rRNA | Enterococcus faecium ATCC 19434 GenBank no. (GI) 5578754 |
| GNSB-941 | | 16S rRNA | phylum Chloroflexi (green nonsulfur bacteria) |
| CFX1223 | | 16S rRNA | phylum Chloroflexi (green nonsulfur bacteria) |
| CFX109 | | 16S rRNA | some members of the class Chloroflexi |
| CFX784 | | 16S rRNA | some members of the class Anaerolineae |
| EUK1195 | | 18S rRNA | Eukarya |
| Acac194 | S-S-Acac-0194-a-A-18 | 16S rRNA | Anaerostipes caccae |
| Rint1102 | S-S-Rint-1102-a-A-18 | 16S rRNA | Roseburia intestinalis, human gut isolates L1-952, L1-93, L1-8151, L1-810, and L1-82 |
| Cinn447 | S-S-Cinn-0447-a-A-18 | 16S rRNA | Clostridium innocum |
| Sple450 | S-S-Sple-0450-a-A-18 | 16S rRNA | Streptococcus pleomorphus |
| Glsc407 | | 18S rRNA | Glaucoma scintillans |
| Glsc413 | | 18S rRNA | Glaucoma scintillans |
| Glsc651 | | 18S rRNA | Glaucoma scintillans |
| Glsc1129 | | 18S rRNA | Glaucoma scintillans |
| R-BT065 | | 16S rRNA | subgroup of Betaproteobacteria |
| R-FL615 | | 16S rRNA | subgroup of Bacteriodetes |
| Ehal578 | S-*-Ehal-0578-a-A-18 | 16S rRNA | Eubacterium hallii, E. hallii L2-7 |
| Fpra655 | S-*-Fpra-0655-a-A-18 | 16S rRNA | Faecalibacterium prausnitzii A2-165 and L2-6 |
| Rint623 | S-*-Rint-0623-a-A-18 | 16S rRNA | Roseburia cecicola, Roseburia intestinalis, human gut isolates L1-81, L1-83, L1-8151, L1-82, L1-952, L1-810, L1-93, A2-194, and A1-86, bacterium clones adhufec8, adhufec225, adhufec150, and adhufec75.25 rumen clones 4C28d-8, 4C3d-14, and 3C3d-8 |
| Emul183 | S-S-Emul-0183-a-A-18 | 16S rRNA | Eubacterium multiforme |
| Esab1467 | S-S-Esab-1467-a-A-18 | 16S rRNA | Eubacterium saburreum |
| Eram997 | S-S-Eram-0997-a-A18 | 16S rRNA | Eubacterium ramulus |
| TGP690 | | 16S rRNA | Pelotomaculum thermopropionicum |
| Pchl454 | | 16S rRNA | Pseudomonas chlororaphis |
| muD1 | | 18S rRNA | Pseudo-Nitzschia multiseries (Bacilliarophyceae) |
| auD1 | | 18S rRNA | Pseudo-Nitzschia australis (Bacilliarophyceae) |
| puD1 | | 18S rRNA | Pseudo-Nitzschia pungens (Bacilliarophyceae) |
| BOLI01 | S-Sc-Boli-1591(P. globosa)-a-A | 18S rRNA | Bolidophyceae |
| BOLI02 | S-Sc-Boli-582(P. globosa)-a-A- | 18S rRNA | Bolidophyceae |
| CHLO02 | | 18S rRNA | Chlorophyta |
| CHLO01 | | 18S rRNA | Most Chlorophyta, some Non-Chlorophyta |
| NCHLO01 | | 18S rRNA | Most Non-Chlorophyta, some Chlorophyta (Chromista) |
| PI1 | | 18S rRNA | Paraphysomonas imperforata (Chrysophyceae) |
| PI2 | | 18S rRNA | Paraphysomonas imperforata (Chrysophyceae) |
| PIMP1683 | | 18S rRNA | Paraphysomonas imperforata (Chrysophyceae) |
| PIMP635 | | 18S rRNA | Paraphysomonas imperforata (Chrysophyceae) |
| PIMP635 | | 18S rRNA | Paraphysomonas imperforata (Chrysophyceae) |
| PV1 | | 18S rRNA | Paraphysomonas vestita (Chrysophyceae) |
| PV2 | | 18S rRNA | Paraphysomonas vestita (Chrysophyceae) |
| PV3 | | 18S rRNA | Paraphysomonas vestita (Chrysophyceae) |
| PV4 | | 18S rRNA | Paraphysomonas vestita (Chrysophyceae) |
| PV5 | | 18S rRNA | Paraphysomonas vestita (Chrysophyceae) |
| 405_Pro | | 16S rRNA | Prochlorococcus (Cyanophyceae) |
| 181_ProHLI | | 16S rRNA | Prochlorococcus HLI (Cyanophyceae) |
| 645_ProHLI | | 16S rRNA | Prochlorococcus HLI (Cyanophyceae) |
| 645_ProHLII | | 16S rRNA | Prochlorococcus HLII (Cyanophyceae) |
| 1445_ProNATL | | 16S rRNA | Prochlorococcus LL (Cyanophyceae) |
| 181_ProLL | | 16S rRNA | Prochlorococcus LL (Cyanophyceae) |
| 645_ProLL | | 16S rRNA | Prochlorococcus LL (Cyanophyceae) |
| 405_Syn | | 16S rRNA | Synechococcus (Cyanophyceae) |
| NA1 | | 18S rRNA | Alexandrium tamarense (North America) |
| P.pisc | | 18S rRNA | Pfiesteria piscicida |
| EUK1209 | | 18S rRNA | Eukarya |
| EUK309R | S-D-Euca-0309-a-A-17 | 18S rRNA | Eukarya |
| EUK502R | S-D-Euca-0502-a-A-15 | 18S rRNA | Eukarya |
| PAO651 (ACCBA651) | S-G-Accba-0651-a-A-18 | 16S rRNA | Most members of the Candidatus Accumulibacter cluster |
| GAOQ431 | | 16S rRNA | Candidatus Competibacter phosphatis |
| GAOQ989 | | 16S rRNA | Candidatus Competibacter phosphatis |
| Erec207 | S-S-Erec-0207-a-A-18 | 16S rRNA | Eubacterium rectale sp. strain A1-86 |
| ACAC | | 16S rRNA | Actinobacillus actinomycetemcomitans |
| B(T)AFO | | 16S rRNA | Tannerella forsythensis (Bacteroides forsythus) |
| POGI | | 16S rRNA | Porphyromonas gingivalis |
| PRIN | | 16S rRNA | Prevotella intermedia |
| FUSO | | 16S rRNA | Fusobacterium spp. |
| VEPA | | 16S rRNA | Veillonella parvula |
| Tsrda641 | S-*-Tsrda-0641-a-A-20 | 16S rRNA | Desulfobacteraceae DGGE clone T1 |
| Tsrda644 | S-*-Tsrda-0644-a-A-19 | 16S rRNA | Desulfobacteraceae DGGE clone T1 |
| Edn656 | S-*-Edn-0656-a-A-18 | 16S rRNA | Desulfobacteraceae DGGE clone E1 |
| Edsrb656 | S-*-Edsrb-0656-a-A-19 | 16S rRNA | Desulfobacteraceae DGGE clone E2 |
| CREN512 | | 16S rRNA | most Crenarchaeota |
| CREN569 | | 16S rRNA | most environmental Crenarchaeota |
| EURY496 | | 16S rRNA | Methanomicrobiales group and VAL 47, VAL 1, VAL9, VAL78 clones |
| EURY499 | | 16S rRNA | Methanosarcina, Methanosaeta, Methanomicrobiales groups and VAL 47,VAL 1, VAL9, VAL78 clones |
| EURY514 | | 16S rRNA | most Euryarchaeota |
| SYBAC697 | S-*-Sybac-0697-a-A-18 | 16S rRNA | Desulforhabdus spp., Desulfovirga spp., Syntrophobacter spp. |
| SYBAC587a | S-*-Sybac-0587-a-A-18 | 16S rRNA | Uncultured Syntrophobacter-related bacteria (Schlöppnerbrunnen I soil clones SbISybac13, 15, and 19 Schlöppnerbrunnen II soil clones SbIISybac12-1, 1-2, 3-2, and 13-2) |
| SYBAC587b | S-*-Sybac-0587-b-A-18 | 16S rRNA | Uncultured Syntrophobacter-related bacteria (Schlöppnerbrunnen I soil clones SbISybac16 Schlöppnerbrunnen II soil clones SbIISybac25-1, 6-2, and 8-2) |
| DSMON999 | S-*-Dsmon-0999-a-A-18 | 16S rRNA | Uncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon2, 3, 4, 5, and 8 Cadagno Lake clones 618, 624, 626, 650, and 651) |
| DSMON1283 | S-*-Dsmon-1283-a-A-18 | 16S rRNA | Uncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon2, 3, 4, 5, and 8) |
| DSMON447 | S-*-Dsmon-0447-a-A-18 | 16S rRNA | Uncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon3, 5, and 8) |
| DSMON468a | S-*-Dsmon-0468-a-A-18 | 16S rRNA | Uncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon3, 5, and 8) |
| DSMON446 | S-*-Dsmon-0446-a-A-18 | 16S rRNA | Uncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon2 and 4) |
| DSMON468b | S-*-Dsmon-0468-b-A-18 | 16S rRNA | Uncultured Desulfomonile-related bacteria (Schlöppnerbrunnen I soil clones SbIDsmon2 and 4) |
| AZA1006 | S-*-Aza-1006-a-A-18 | 16S rRNA | Most members of the Azoarcus cluster |
| RHC630 | S-*-RHC-0630-a-A-18 | 16S rRNA | Most Thauera, Zoogloea, and Rhodocyclus spp. |
| RHC143 | S-*-RHC-0143-a-A-18 | 16S rRNA | Most members of the Dechloromonas-Ferribacterium-Quadricoccus-Azonexus, the Azospira, and the Rhodocyclus-Propionivibrio-Accumulibacter lineages, Zoogloea spp., and few members of the Azoarcus-Thauera-Denitromonas lineage |
| DAF1030 | S-*-D.A.F-1030-a-A-18 | 16S rRNA | Some bacteria of the Dechloromonas-Ferribacterium-Quadricoccus-Azonexus lineage |
| AZAR483 | S-*-Azar-0483-a-A-18 | 16S rRNA | Azoarcus cluster |
| AZA444 | S-*-Aza-0444-a-A-18 | 16S rRNA | Azoarcus evansii, Azoarcus tolulyticus str.Td-3, Azoarcus tolulyticus str.Td-19, Azoarcus sp. ToN1 |
| AZTOLY452 | S-*-Az.toly-0452-a-A-18 | 16S rRNA | Azoarcus tolulyticus |
| AZANBU228 | S-*-Az.an.bu-0228-a-A-18 | 16S rRNA | Azoarcus anaerobius, Azoarcus buckelli |
| AZAN130 | S-S-Az.an-0130-a-A-18 | 16S rRNA | Azoarcus anaerobius |
| AZAN465 | S-S-Az.an-0465-a-A-18 | 16S rRNA | Azoarcus anaerobius |
| AZA463 | S-*-Aza-0463-a-A-18 | 16S rRNA | Azoarcus sp.PbN1 and HxN1 |
| AZA835 | S-*-Aza-0835-a-A-18 | 16S rRNA | Azoarcus sp.PbN1 |
| AZA452 | S-*-Aza-0452-a-A-18 | 16S rRNA | Azoarcus sp. PH002, Azoarcus sp. CR23 |
| AZOA844 | S-*-Azoa-0844-a-A-18 | 16S rRNA | Azoarcus sp. PH002, Azoarcus sp. CR23 |
| ATDe442 | S-*-ATDe-0442-a-A-18 | 16S rRNA | Activated sludge clones A33, H25, H30, H35, S3, S10, and S23 of the Azoarcus-Thauera-Denitromonas lineage |
| ATDe830 | S-*-ATDe-0830-a-A-18 | 16S rRNA | Activated sludge clones A33, H25, H30, H35, S3, S10, and S23 of the Azoarcus-Thauera-Denitromonas lineage |
| S3-486 | S-*-S3-0486-a-A-18 | 16S rRNA | activated sludge clone S3 |
| A33-587 | S-*-A33-0587-a-A-18 | 16S rRNA | activated sludge clone A33 |
| AZIND433 | S-S-Az.ind-0433-a-A-18 | 16S rRNA | Azoarcus indigens, Azoarcus sp. BH72 |
| AZIND449 | S-St-Az.ind-0449-a-A-18 | 16S rRNA | Azoarcus sp. BH72 |
| AZIND455 | S-St-Az.ind-0455-a-A-18 | 16S rRNA | Azoarcus indigens |
| AZCOM447 | S-S-Az.com.-0447-a-A-18 | 16S rRNA | Azoarcus communis |
| THAU832 | S-*-Thau-0832-a-A-18 | 16S rRNA | Thauera spp. |
| THAU455a | S-*-Thau-0455-a-A-18 | 16S rRNA | Thauera chlorobenzoica, Thauera mechernichensis |
| THAU443 | S-*-Thau-0443-a-A-18 | 16S rRNA | Thauera selenatis, Thauera phenylacetica, and related Thauera spp. |
| THAU580 | S-*-Thau-0580-a-A-18 | 16S rRNA | Thauera selenatis, soil clone AX39 |
| THAU455b | S-*-Thau-0455-b-A-18 | 16S rRNA | Thauera sp. PIV-1, TCB-transforming microbial consortium clone SJA-186 |
| THAU468 | S-*-Thau-0468-a-A-18 | 16S rRNA | Thauera sp. PIV-1, TCB-transforming microbial consortium clone SJA-186 |
| THATE461 | S-*-Tha.te-0461-a-A-18 | 16S rRNA | Thauera terpenica |
| DENAR176 | S-*-Denar-0176-a-A-18 | 16S rRNA | Denitromonas aromaticus |
| DENAR453 | S-*-Denar-0453-a-A-18 | 16S rRNA | Denitromonas aromaticus |
| DENAR845 | S-*-Denar-0845-a-A-18 | 16S rRNA | Denitromonas aromaticus |
| ZOGLO828 | S-*-Zoglo-0828-a-A-18 | 16S rRNA | Zoogloea spp. |
| ZOGLO455 | S-*-Zoglo-0455-a-A-18 | 16S rRNA | Some members of the Zoogloea lineage (activated sludge clones H13, H11, H22, H10, H40, H27, and S21), not Z. ramigera and Z. resiniphila |
| ZORAM211 | S-*-Zo.ram-0211-a-A-18 | 16S rRNA | Zoogloea ramigera |
| ZORAM441 | S-*-Zo.ram-0441-a-A-18 | 16S rRNA | Zoogloea ramigera |
| RHAC855 | S-*-RhAc-0855-a-A-18 | 16S rRNA | Rhodocyclus spp., most members of the Candidatus Accumulibacter cluster |
| ACCBA443 | S-*-Accba-0443-a-A-18 | 16S rRNA | Some members of the Candidatus Accumulibacter cluster |
| RHO828 | S-G-Rho-0828-a-A-18 | 16S rRNA | Rhodocyclus spp. |
| RHO842 | S-G-Rho-0842-a-A- | 16S rRNA | Rhodocyclus spp. |
| RHOTE1280 | S-*-Rho.te-1280-a-A-18 | 16S rRNA | Rhodocyclus tenuis DSM109, Rhodocyclus tenuis SW18 |
| AZP737 | S-G-Azp-0737-a-A-18 | 16S rRNA | Most Azospira spp. |
| AZP471 | S-G-Azp-0471-a-A-18 | 16S rRNA | Most Azospira spp. |
| AZP456 | S-G-Azp-0456-a-A-18 | 16S rRNA | Most Azospira spp. |
| DCMAG455 | S-S-Dcm.ag-0455-a-A-18 | 16S rRNA | Dechloromonas agitata |
| DEMFE455 | S-*-Dem.Fe-0455-a-A-18 | 16S rRNA | Ferribacterium limneticum, few Dechloromonas spp. |
| AZV211 | S-G-Azv-0211-a-A-18 | 16S rRNA | Azovibrio spp. |
| AZVRE847 | S-*-Azv.re-0847-a-A-18 | 16S rRNA | Azovibrio restrictus |
| STEBA468 | S-*-Steba-0468-a-A-18 | 16S rRNA | Some members of the Sterolibacterium lineage (activated sludge clones S28, A13, S40, H12, H23, and H20) |
| STEBA635 | S-*-Steba-0635-a-A-18 | 16S rRNA | Few members of the Sterolibacterium lineage (activated sludge clones S28 and A13) |
| STEBA643 | S-*-Steba-0643-a-A-18 | 16S rRNA | Few members of the Sterolibacterium lineage (activated sludge clones S40, H12, H23, and H20) |
| STEBA214 | S-*-Steba-0214-a-A-18 | 16S rRNA | Few members of the Sterolibacterium lineage (clones SBR1001, SBR2080, and GC24) |
| QUACO135 | S-*-Quaco-0135-a-A-18 | 16S rRNA | Quadricoccus australiensis, reactor clone PHOS-HE23 |
| BTWO663 | S-*-Btwo-0663-a-A-18 | 16S rRNA | most Rhodocyclales, but not the Rhodocyclales environmental cluster 1, Zoogloea spp., and Dechlorosoma-Azospira cluster |
| ATD1459 | S-*-ATD-1459-a-A-18 | 16S rRNA | most Azoarcus spp. and Thauera spp., Denitromonas sp. |
| TH3 (AZTHA222,RHC222) | S-*-RHC-0222-a-A-18 | 16S rRNA | Some members of the Azoarcus-Thauera-Denitromonas, Zoogloea, and Azovibrio lineages |
| AZIN1023 | S-*-Az.in-1023-a-A-18 | 16S rRNA | Azoarcus sp. BH72, Azoarcus indigens |
| TH14 (RHC175b) | S-*-RHC-0175-b-A-18 | 16S rRNA | Some Thauera, Azoarcus, Zoogloea, Sterolibacterium, and Azovibrio spp. |
| AZA1252 | S-*-Aza-1252-a-A-18 | 16S rRNA | Azoarcus evansii, Azoarcus toluvorans, Azoarcus tolulyticus, Azoarcus toluclasticus |
| ATDe467 | S-*-ATDe-0467-a-A-18 | 16S rRNA | Activated sludge clones A33, H25, H30, H35, S3, S10, and S23 of the Azoarcus-Thauera-Denitromonas lineage |
| ZOGLO1416 | S-G-Zoglo-1416-a-A-18 | 16S rRNA | Zoogloea spp. |
| ACCBA651 | S-*-Accba-0651-a-A-18 | 16S rRNA | most bacteria of the Candidatus Accumulibacter phosphatis cluster |
| ACCBA455 | S-*-Accba-0455-a-A-18 | 16S rRNA | Some members of the Candidatus Accumulibacter cluster |
| ACCBA846 | S-*-Accba-846-a-A-18 | 16S rRNA | Most members of the Candidatus Accumulibacter cluster |
| STEBA448 | S-*-Steba-0448-a-A-18 | 16S rRNA | Some members of the Sterolibacterium lineage (activated sludge clones S28, A13, S40, H12, H23, and H20) |
| Cap1428 | | 16S rRNA | Candidatus capitivii acidiprotistae |
| EUKb1193 | | 18S rRNA | nearly all Eukarya |
| EUKb503 | | 18S rRNA | nearly all Eukarya |
| EUKb310 | | 18S rRNA | nearly all Eukarya |
| LKC59 | S-*-eProt-0059-a-A-18 | 16S rRNA | Epsilonproteobacterial group I from Lower Kane Cave |
| LKC1006 | S-*-eProt-1006-a-A-18 | 16S rRNA | Epsilonproteobacterial group II from Lower Kane Cave |
| HHY | | 16S rRNA | Haliscomenobacter hydrossis |
| TNI | | 16S rRNA | Thiothrix nivea |
| LMU | | 16S rRNA | Leucothrix mucor |
| 21N | | 16S rRNA | Eikelboom type 021N strain II-26 |
| LDI | | 16S rRNA | Leptothrix discophora |
| SNA | | 16S rRNA | Sphaerotilus natans |
| Cp1 | | 16S rRNA | Clostridium perfringens |
| Cp2 | | 16S rRNA | Clostridium perfringens |
| Cp3 | | 23S rRNA | Clostridium perfringens |
| ARBA (23-mer) | | 16S rRNA | Arcobacter spp. |
| ARBA (27-mer) | | 16S rRNA | Arcobacter spp. |
| ARBU (24-mer) | | 16S rRNA | Arcobacter butzleri |
| Hp16S-1 | | 16S rRNA | Helicobacter pylori |
| beta-572 | | 16S rRNA | Candidatus Snodgrassella alvi or Beta (symbiotic Neisseriaceae phylotype in honey bee) |
| OalgGAM445 | | 16S rRNA | Gammaproteobacterial, sulfur-oxidizing symbiont of Olavius algarvensis |
| OalgDEL136 | | 16S rRNA | Deltaproteobacterial symbiont of Olavius algarvensis |
| I. leu. (IleuSYM581) | | 16S rRNA | Gammaproteobacterial symbiont of Inanidrilus leukodermatus |
| O. tan. (OtanSYM581) | | 16S rRNA | Gammaproteobacterial symbiont of Olavius tantalus |
| PRYM02 | | 18S rRNA | Prymnesiophyceae |
| PTB-6-7/1030 | | 16S rRNA | PTB 6/7 cluster |
| PTB-6-7/997 | | 16S rRNA | PTB 6/7 cluster |
| PTB-1/482 | | 16S rRNA | PTB 1 cluster, Stappia stellulata, bacterium (AB010864) |
| PTB-1/1014 | | 16S rRNA | PTB 1 cluster, Stappia stellulata |
| PTB-all/646 | | 16S rRNA | Alphaproteobacterial clade (all PTB) |
| PELA02 | | 18S rRNA | Pelagophyceae clade containing Aureococcus, Pelagomonas, Pulvinaria, CCMP 1395 |
| PELA01 | | 18S rRNA | Pelagophyceae |
| PAO462 | | 16S rRNA | Candidatus Accumulibacter phosphatis |
| Rc988 | | 16S rRNA | Rhodocyclus spp., Candidatus Accumulibacter phosphatis, and related bacteria |
| ALBO577 | | 16S rRNA | Alcaligenes, Bordetella and close relatives |
| DEV677 | | 16S rRNA | Devosia riboflavina and relatives |
| ENT183 | | 16S rRNA | Enterobacteriaceae |
| FLX101 | | 16S rRNA | Flavobacterium ferrugineum, Flexibacter elegans, F. sancti |
| MET1217 | | 16S rRNA | Methylophilus |
| NEV817 | | 16S rRNA | Nevskia ramosa and relatives |
| PED672 | | 16S rRNA | Pedobacter heparinus and relatives |
| SPH492 | | 16S rRNA | Sphingomonas, Erythrobacter |
| Ecras651 | | 18S rRNA | Euplotes crassus |
| Ecras1246 | | 18S rRNA | Euplotes crassus |
| Evan651 | | 18S rRNA | Euplotes vannus |
| Emin619 | | 18S rRNA | Euplotes minuta |
| Emin651 | | 18S rRNA | Euplotes minuta |
| PNA | | 18S rRNA | Macrorhabdus ornithogaster |
| Mcaps-1032 | | 16S rRNA | Methylocapsa acidiphila |
| Msint-1268 | | 16S rRNA | Methylosinus trichosporium |
| Msins-647 | | 16S rRNA | Methylosinus sporium |
| Mcyst-1432 | | 16S rRNA | Methylocystis |
| Mcyst-1261 | | 16S rRNA | peat-inhabiting subgroup of Methylocystis spp. |
| Cluster6a192 (6a192) | S-*-Nsm6a-0192-a-A-20 | 16S rRNA | Nitrosomonas oligotropha lineage (Cluster 6a) |
| PBR2 | S-S-Pbr2-0182-a-A-19 | 16S rRNA | Bifidobacterium breve |
| RdCap503 | | 16S rRNA | Rhodobacter capsulatus |
| EBAC1790 | S-*-EBAC-1790-a-A-18 | 23S rRNA | Enterobacteriaceae |
| Ntspa685 | S-G-Ntspa-0685-a-A-22 | 16S rRNA | Nitrospira moscoviensis, Nitrospira marina and 710-9 clone |
| Ntspa454 | S-*-Ntspa-0454-a-A-19 | 16S rRNA | Nitrospira moscoviensis 710-9 clone |
| SymA | | 18S rRNA | Symbiodinium clade A |
| SymB | | 18S rRNA | Symbiodinium clade B |
| SymC | | 18S rRNA | Symbiodinium clade C |
| Myc657 | S-*-Myc-0657-a-A-16 | 16S rRNA | Mycobacterium subdivision (mycolic acid-containing actinomycetes) |
| Hpy16S | | 16S rRNA | Helicobacter pylori |
| COR653 | S-*-Cor-0653-a-A-18 | 16S rRNA | Coriobacterium group (Coriobacterium and Collinsella) |
| ATO291 | S-*-Ato-0291-a-A-17 | 16S rRNA | Atopobium cluster |
| Ntcoc206 | S-*-Ntcoc-206-a-A-18 | 16S rRNA | Nitrococcus mobilis |
| Ntspn994 | S-*-Ntspn-994-a-A-18 | 16S rRNA | Nitrospina gracilis |
| Nscry1004 | S-*-Nscry-1004-a-A-19 | 16S rRNA | Nitrosomonas cryotolerans |
| Nscoc65 | S-*-Nscoc-65-a-A-18 | 16S rRNA | Nitrosococcus oceani, Nitrosococcus halophilus |
| Nscoc1248 | S-*-Nscoc-1248-a-A-18 | 16S rRNA | Nitrosococcus oceani, Nitrosococcus halophilus |
| Dhe1259t | | 16S rRNA | some Dehalococcoides spp. |
| Dhe1259c | | 16S rRNA | some Dehalococcoides spp. |
| Sca1309 | S-G-Sca-1309-a-A-21 | 16S rRNA | genus Candidatus Scalindua |
| Scabr1114 | S-*-Scabr-1114-a-A-22 | 16S rRNA | Candidatus Scalidua brodae |
| Amx368 | S-*-Amx-0368-a-A-18 | 16S rRNA | all ANAMMOX bacteria |
| BS820 | S-*-BS-820-a-A-22 | 16S rRNA | Candidatus Scalidua wagneri, Candidatus Scalidua sorokinii |
| NSMR76 | | 16S rRNA | Nitrosomonas marina-like ammonia-oxidizing bacteria |
| NSMR34 | | 16S rRNA | Nitrosospira tenius-like ammonia-oxidizing bacteria |
| Nmo218 | | 16S rRNA | Nitrosomonas oligotropha-lineage |
| NITROSO4E | | 16S rRNA | Betaproteobacterial ammonia-oxidizing bacteria |
| Bfra602 | S-*-Bfra-0602-a-A-19 | 16S rRNA | Bacteroides fragilis group |
| Bdis656 | S-*-Bdis-0656-a-A-18 | 16S rRNA | Bacteroides distasonis |
| Clit135 | S-*-Clit-0135-a-A-19 | 16S rRNA | some of the Clostridium lituseburense group (Clostridium cluster XI) |
| Chis150 | S-*-Chis-0150-a-A-23 | 16S rRNA | most of the Clostridium histolyticum group (Clostridium cluster I and II) |
| Erec482 | S-*-Erec-0482-a-A-19 | 16S rRNA | most of the Clostridium coccoides-Eubacterium rectale group (Clostridium cluster XIVa and XIVb) |
| Strc493 | S-*-Strc-0493-a-A-19 | 16S rRNA | most Streptococcus spp. and some Lactococcus spp. |
| GB | | 16S rRNA | novel gammaproteobacterial group |
| GB_G1 (GAOQ989) | | 16S rRNA | novel gammaproteobacterial group |
| GB_G2 | | 16S rRNA | novel gammaproteobacterial group |
| GB_1 and 2 | | 16S rRNA | novel gammaproteobacterial group |
| GB_2 | | 16S rRNA | novel gammaproteobacterial group |
| GB_3 | | 16S rRNA | novel gammaproteobacterial group |
| GB_4 | | 16S rRNA | novel gammaproteobacterial group |
| GB_5 | | 16S rRNA | novel gammaproteobacterial group |
| GB_6 (Gam1019) | | 16S rRNA | novel gammaproteobacterial group |
| GB_7 | | 16S rRNA | novel gammaproteobacterial group |
| CFB560 | | 16S rRNA | subgroup of Bacteroidetes |
| CFB562 | | 16S rRNA | subgroup of Bacteroidetes |
| CFB376 | | 16S rRNA | subgroup of Bacteroidetes |
| Lis-637 | | 16S rRNA | Listeria spp., except L. grayi |
| Mka220 | | 16S rRNA | subgroup of Bacteroidetes |
| Mkb221 | | 16S rRNA | subgroup of Bacteroidetes |
| Mkc219 | | 16S rRNA | subgroup of Bacteroidetes |
| Mkd1111 | | 16S rRNA | subgroup of Bacteroidetes |
| SGR220 | | 16S rRNA | Saprospira grandis |
| SGR1200 | | 16S rRNA | Saprospira grandis and relatives |
| SGR1425 | | 16S rRNA | Saprospira grandis and relatives |
| Bak655 | | 16S rRNA | Candidatus Magnospira bakii |
| Bak1408 | | 16S rRNA | Candidatus Magnospira bakii |
| ARC94 | | 16S rRNA | Arcobacter |
| ARC1430 | | 16S rRNA | Arcobacter |
| ACA652b | | 16S rRNA | some unknown Acinetobacter-like species |
| T25-1028 | | 16S rRNA | clone T25 and T19 of a subgroup within the Betaproteobacteria |
| T25-220 | | 16S rRNA | clone T25 and other clones of a subgroup within the Betaproteobacteria, not clone T19 |
| T28-649 | | 16S rRNA | clone T28 and T29 of a subgroup within the Alphaproteobacteria, Sphingomonas capsulata |
| T28-1435 | | 16S rRNA | clone T28 and T29 of a subgroup within the Alphaproteobacteria |
| III1421 | | 16S rRNA | cluster III of Clostridiaceae |
| IV815 | | 16S rRNA | cluster IV of Clostridiaceae |
| IX854 | | 16S rRNA | cluster IX of Clostridiaceae |
| UCA1124 | | 16S rRNA | Firmicutes (low G+C Gram-positives) subgroup |
| UCB807 | | 16S rRNA | Firmicutes (low G+C Gram-positives) subgroup |
| UCC926 | | 16S rRNA | Firmicutes (low G+C Gram-positives) subgroup |
| CFB935 | | 16S rRNA | Bacteroides-Porphyromonas-Prevotella subgroup |
| BLS1295 | | 16S rRNA | Bacillus-Lactobacillus-Streptococcus subgroup |
| SPIRO1400 | | 16S rRNA | subgroup of the Spirochaetaceae |
| GAM42_C1033 | | 23S rRNA | currently unknown |
| Lbrev | | 16S rRNA | Lactobacillus brevis |
| Lcoll | | 16S rRNA | Lactobacillus collinoides |
| Lcory | | 16S rRNA | Lactobacillus coryniformis |
| Lfarc | | 16S rRNA | Lactobacillus farciminis |
| Lhilg | | 16S rRNA | Lactobacillus hilgardii |
| Lmali | | 16S rRNA | Lactobacillus mali |
| Lpara | | 16S rRNA | Lactobacillus casei, Lactobacillus paracasei |
| Lzeae | | 16S rRNA | Lactobacillus zeae, Lactobacillus casei |
| Ooeni | | 16S rRNA | Oenococcus oeni |
| Pdamn | | 16S rRNA | Pediococcus damnosus |
| Pparv | | 16S rRNA | Pediococcus parvulus |
| Urobe63a | S-*-Urobe-0063-a-A-20 | 16S rRNA | uncultured Ruminococcus obeum-like bacteria |
| Urobe63b | S-*-Urobe-0063-b-A-20 | 16S rRNA | uncultured Ruminococcus obeum-like bacteria |
| CFX1238 | | 16S rRNA | Chloroflexus |
| RFX1238 | | 16S rRNA | Roseiflexus assemblage |
| Pchl454 | | 16S rRNA | Pseudomonas chlororaphis |
| b91 | | 16S rRNA | mealybug betaproteobacterial endosymbionts |
| b162 | | 16S rRNA | mealybug betaproteobacterial endosymbionts |
| b886 | | 16S rRNA | mealybug betaproteobacterial endosymbionts |
| b1273 | | 16S rRNA | mealybug betaproteobacterial endosymbionts |
| g80 | | 16S rRNA | secondary endosymbiont of Planococcus citri |
| g458 | | 16S rRNA | secondary endosymbiont of Planococcus citri |
| g630 | | 16S rRNA | secondary endosymbiont of Planococcus citri |
| g1273 | | 16S rRNA | secondary endosymbiont of Planococcus citri |
| NLIMI 91 | S-G-N.limI-0091-a-A-18 | 16S rRNA | Nostocoida limicola I |
| NLIMII 175 | S-S-N.limII-0175-a-A-18 | 16S rRNA | Nostocoida limicola II strains except strain Ben 70 |
| NLIMII 192 | S-S-N.limII-0192-a-A-18 | 16S rRNA | Nostocoida limicola II strain Ben 70 |
| NLIMIII 301 | S-S-N.limIII-0301-a-A-18 | 16S rRNA | Nostocoida limicola III strains |
| NLIMIII 729 | S-S-N.limIII-0729-a-A-18 | 16S rRNA | Nostocoida limicola III strain Ben 220 |
| NLIMIII 830 | S-S-N.limIII-0830-a-A-18 | 16S rRNA | Nostocoida limicola III strains except Ben 220 |
| Bmy843 | S-*-Bmy-0843-a-A-18 | 16S rRNA | Bacillus |
| Ver620 | S-*-Ver-0620-a-A-18 | 16S rRNA | Verrucomicrobium |
| MIB661 | S-S-Bacm-0661-a-A-18 | 16S rRNA | mouse intestinal bacteria |
| MIB724 | S-S-Bacm-0724-a-A-18 | 16S rRNA | mouse intestinal bacteria |
| LGC | | 16S rRNA | Firmicutes (low G+C Gram-positives) |
| Clost I | | 16S rRNA | subgroup of Clostridia cluster I and II |
| AW | | 16S rRNA | some Acetobacterium species, E. limosum |
| DSV (DSV321) | | 16S rRNA | Some Desulfovibrionaceae, Desulfomicrobiaceae, Desulfohalobiaceae, and other Bacteria |
| AMAR 839 | S-G-AMAR-0839-a-A-22 | 16S rRNA | Amaricoccus spp. |
| Cpara | | 18S rRNA | Candida parapsilosis |
| FNEC | | 16S rRNA | Fusobacterium necrophorum |
| RSOLA | | 23S rRNA | Ralstonia solanacearum, Ralstonia syzygii, blood disease bacterium (BLDB) |
| RSOLB | | 23S rRNA | Ralstonia solanacearum, Ralstonia syzygii, blood disease bacterium (BLDB) |
| TTI-732 | | 16S rRNA | Treponema cluster I |
| Dev1-486 | | 16S rRNA | ectosymbiotic spirochetes on Devescovina sp. and Stephanonympha sp. |
| Dev14-486 | | 16S rRNA | ectosymbiotic spirochetes on Devescovina sp. and Stephanonympha sp. |
| Dev14-Tp652 | | 16S rRNA | ectosymbiotic spirochetes on Devescovina sp. and Stephanonympha sp. |
| Oxy8-Tp444 | | 16S rRNA | ectosymbiotic spirochetes on Oxymonas sp. and Stephanonympha sp. |
| Oxy26-Tp1281 | | 16S rRNA | ectosymbiotic spirochetes on Oxymonas sp. and Stephanonympha sp. |
| Doh299 | | 18S rRNA | AMD Dothideomycete fungi |
| Eur1108 | | 18S rRNA | Eurotiomycetes, including AMD fungi |
| Oil845 | | 18S rRNA | AMD Dothideomycete fungi |
| AcRic90 | S-*-AcEnd-0090-a-A-18 | 16S rRNA | Rickettsia-related endosymbionts of Acanthamoeba strains UWC8 and UWC36 |
| AcRic1196 | S-*-AcEnd-1196-a-A-18 | 16S rRNA | Rickettsia-related endosymbionts of Acanthamoeba strains UWC8 and UWC36 |
| 1109TY1R | | 16S rRNA | Methanobrevibacter-related endosymbionts of Reticulitermes speratus |
| 1109TY2R | | 16S rRNA | Methanobrevibacter-related endosymbionts of Reticulitermes speratus |
| 1109TY3R | | 16S rRNA | Methanobrevibacter-related endosymbionts of Reticulitermes speratus |
| 1174TY1R | | 16S rRNA | Methanobrevibacter-related endosymbionts of Reticulitermes speratus |
| 1174TY2R | | 16S rRNA | Methanobrevibacter-related endosymbionts of Reticulitermes speratus |
| 1174TY3R | | 16S rRNA | Methanobrevibacter-related endosymbionts of Reticulitermes speratus |
| MPH-730 | | 16S rRNA | Methylophaga |
| MPHm-994 | | 16S rRNA | Methylophaga marina |
| REX72 | | 16S rRNA | Bacillus |
| LGC353b | | 16S rRNA | Bacillus |
| prV2 | | 16S rRNA | uncultured alphaproteobacterium |
| prV6 | | 16S rRNA | uncultured alphaproteobacterium |
| prV8 | | 16S rRNA | uncultured alphaproteobacterium |
| B6 | | 16S rRNA | subgroup of Brucella spp. |
| B9 | | 16S rRNA | subgroup of Brucella spp. |
| B13 | | 16S rRNA | subgroup of Brucella spp. |
| Ap665 | | 18S rRNA | Aureobasidium pullulans |
| Ch614 | | 18S rRNA | Cladosporium herbarum |
| U519 | | 16S rRNA | all known 18S-like rRNA sequences |
| Aph1180 | S-G-Aph-1180-a-A-18 | 16S rRNA | Candidatus Amoebophilus asiaticus |
| Rhabdo | S-S-RhaC-0992-a-A | 16S rRNA | Candidatus Rhabdochlamydia porcellionis |
| SBR9-1a | S-D-s91a-0578-b-A-20 | 16S rRNA | Alphaproteobacterial SBR9 clone 1 (AY254694) |
| SBR9-1b | S-D-s91a-0778-b-A-18 | 16S rRNA | Alphaproteobacterial SBR9 clone 1 (AY254694) |
| Staph747 | S-G-Staph-0747-a-A-19 | 16S rRNA | Staphylococcus spp. |
| PAG59 | S-G-Pan-0059-a-A-18 | 16S rRNA | Pantoea spp. |
| Rick_527 | S-F-Rick-0527-a-A-16 | 16S rRNA | members of the Rickettsiaceae family Caedibacter caryophilus |
| Rick_1442 | S-F-Rick-1442-a-A-18 | 16S rRNA | members of the Rickettsiaceae family |
| ARM980 | | 16S rRNA | novel AMD euryarchaeota |
| cWTF915 | | 16S rRNA | AMD nanoarchaeal lineage |
| Azo644 (AZA645) | S-*-Aza-0645-a-A-18 | 16S rRNA | Most members of the Azoarcus cluster |
| A08KA458 | S-*-A08KA-0459-a-A-18 | 16S rRNA | Oral strain A08KA lineage |
| BuCc | | 16S rRNA | Buchnera aphidicola Cc |
| SCc | | 16S rRNA | S-Symbiont R-Type |
| WCc | | 16S rRNA | Wolbachia |
| Apur453 | S-S-Lpcpur-0453-a-A-26 | 16S rRNA | Lamprocystis purpurea (DSM4197), strain A12 3 and clone 345, Lake Cadagno. |
| Cmok453 | S-S-Chrok-0453-a-A-26 | 16S rRNA | Chromatium okenii (DSM169) and clone 359, Lake Cadagno. |
| Laro453 | S-S-Lpcro-0453-a-A-26 | 16S rRNA | Lamprocystis roseopersicina (DSM229) and clone 136, Lake Cadagno |
| S453D | S-*-Lpc-0453-a-A-26 | 16S rRNA | Lamprocystis-related bacteria (strain D21 and clone 261, Lake Cadagno) |
| Cmvi453 | S-S-Alcvi-0453-a-A-26 | 16S rRNA | Allochromatium vinosum (DSM180) |
| S453F | S-*-Lpc-0453-b-A-26 | 16S rRNA | Lamprocystis - related bacteria (clones 335, 371 and strain cad16, Lake Cadagno) |
| DSC213 | S-S-Dscthz-0213-a-A-18 | 16S rRNA | Desulfocapsa thiozymogenes |
| DSC441 | S-*-Dsc-0441-a-A-19 | 16S rRNA | Few Desulfocapsa |
| S453H | S-*-Tcs-0453-a-A-26 | 16S rRNA | Thiocystis minor-related bacteria (clones 222, 13 and strain H1.1, Lake Cadagno) |
| S448 | S-*-Tcs-0448-a-A-21 | 16S rRNA | Thiocystis gelatinosa-related bacteria (clone 130 and strain 448.10, Lake Cadagno) |
| SRB441 | | 16S rRNA | Few Desulfobulbaceae |
| DsmA455 | S-*-Dmn-0455-a-A-26 | 16S rRNA | Desulfomonile-related Lake Cadagno clones 618, 624, 626, and 651 |
| DsmB455 | S-*-Dmn-0455-b-A-26 | 16S rRNA | Desulfomonile-related Lake Cadagno clone 650 |
| Chlp441 | S-S-Chlphb-0441-a-A-23 | 16S rRNA | Chlorobium phaeobacteroides (DSM 266), strain 1VIID7 and clone 366 Lake Cadagno. |
| Chlc190 | S-S-Chlctf-0190-a-A-22 | 16S rRNA | Chlorobium clathratiforme (DSM 5477), strain 4DE and clones 810, 827, 849 Lake Cadagno. |
| UV7-763 | S-St-UV7-763-a-A-18 | 16S rRNA | Parachlamydia sp. UV-7 |
| TG1-Ta-Rsa | S-S-E.tri-1023-a-A-20 | 16S rRNA | Candidatus Endomicrobium trichonymphae |
| TG1-Pv-Rsa | S-S-E.pyr-1023-a-A-20 | 16S rRNA | Candidatus Endomicrobium pyrsonymphae |
| Arglo32 | S-O-Arglo-0032-a-A-20 | 16S rRNA | Archaeoglobales |
| Aqui1197 | S-O-Aqui-1197-a-A-20 | 16S rRNA | Aquificales |
| Tcoc164 | S-O-Tcoc-0164-a-A-20 | 16S rRNA | Thermococcales |
| Eca58 | | 23S rRNA | Enterococcus casseliflavus |
| Edr58 | | 23S rRNA | Enterococcus durans |
| Ehr58 | | 23S rRNA | Enterococcus hirae |
| Efm09 | | 23S rRNA | Enterococcus faecium |
| Ema58i | | 23S rRNA | Enterococcus malodoratus |
| Esasu58i | | 23S rRNA | Enterococcus saccharolyticus, Enterococcus sulfureus |
| Poly_862 | S-G-Poly-0862-a-A-18 | 16S rRNA | Polynucleobacter necessarius-cluster |
| APL637 | | 16S rRNA | Aplasma, acid mine drainage Thermoplasmatales |
| GPL642 | | 16S rRNA | Gplasma, acid mine drainage Thermoplasmatales |
| TPL759 | | 16S rRNA | Tplasma, Thermoplasma spp. |
| BPL830 | | 16S rRNA | Bplasma, acid mine drainage Thermoplasmatales |
| EPL623 | | 16S rRNA | Eplasma, acid mine drainage Thermoplasmatales |
| Meiot836 | | 16S rRNA | Meiothermus sp. |
| Proca438 | S-G-Proca-0438-a-A-18 | 16S rRNA | Candidatus Procabacter sp. |
| MB311 | | 16S rRNA | Methanobacteriales |
| MB1174 | | 16S rRNA | Methanobacteriales (minus Methanothermus) |
| MC504 | | 16S rRNA | Methanocaldococcaceae(+some Methanococcaceae) |
| MC1109 | | 16S rRNA | Methanococcaceae |
| MG1200b | | 16S rRNA | most Methanomicrobiales |
| MS821 | | 16S rRNA | Methanosarcina |
| MS1414 | | 16S rRNA | Methanosarcina, Methanococcoides, Methanolobus |
| MSMX860 | | 16S rRNA | Methanosarcinales (all Methanosarcina and Methanosaeta) |
| MX825 | | 16S rRNA | some Methanosaetaceae |
| MX825b | | 16S rRNA | Methanosaetaceae subgroup |
| MX825c | | 16S rRNA | Methanosaetaceae subgroup |
| MX1361 | | 16S rRNA | Methanosaetaceae |
| HEL274 | | 16S rRNA | Helicobacter sp., Wolinella sp. |
| HEL717 | | 16S rRNA | Helicobacter sp., Wolinella sp. |
| HEP642 | | 16S rRNA | Helicobacter hepaticus |
| GAN1237 | | 16S rRNA | Helicobacter ganmani |
| Actino837 | | 16S rRNA | specific for phylotype Rs-Q42/RsW01-017 in Propionibacteriaceae |
| CTE998-1015 | | 16S rRNA | Collimonas sp. |
| ZNS1439 | S-*-Znsym-1439-a-A-20 | 16S rRNA | Zoothamnium niveum ectosymbiont |
| ZNS196 | S-*-Znsym-0196-a-A-19 | 16S rRNA | Zoothamnium niveum ectosymbiont |
| MPA | | 16S rRNA | Candidatus Microthrix |
| PPx3-1428 | | 16S rRNA | Candidatus Alysiomicrobium bavaricum |
| Noli-644 | | 16S rRNA | Candidatus Alysiosphaera europaea |
| MC2-649 | | 16S rRNA | Candidatus Monilibacter batavus |
| Sita-649 | | 16S rRNA | Candidatus Sphaeronema italicum |
| Combo-1031 | | 16S rRNA | Candidatus Combothrix italica |
| Cate-1013 | | 16S rRNA | Candidatus Catenimonas italica |
| MZ1 | | 16S rRNA | Thauera spp. mzt1t |
| GAM42a_T1038_G1031 | | 23S rRNA | Representatives of the Xanthomonas group |
| GAM42a_T1038 | | 23S rRNA | Representatives of the Xanthomonas group |
| GAM42a_A1041_A1040 | | 23S rRNA | Representatives of the Xanthomonas group and the Alphaproteobacteria, Brevundimonas diminuta |
| Cren537 | | 16S rRNA | Crenarchaea |
| Eury806 | | 16S rRNA | Euryarchaea |
| FUNU | | 16S rRNA | Fusobacterium nucleatum/canifelinum |
| EICO | | 16S rRNA | Eikenella corrodens |
| CARE | | 16S rRNA | Campylobacter rectus |
| PnecABCD-445 | | 16S rRNA | Polynucleobacter cluster |
| Actino-221 | S-S-Actino-221-a-A-18 | 16S rRNA | Actinobacterial PAO |
| Actino-658 | S-S-Actino-658-a-A-18 | 16S rRNA | Actinobacterial PAO |
| Ih820 | S-*-Ih820-0820-a-A-18 | 16S rRNA | Desulfotomaculum subcluster Ih (Pelotomaculum and Cryptanaerobacter) |
| ProCo1264 | S-*-ProCo-1264-a-A-23 | 16S rRNA | Ruminococcus productus and relatives |
| Csac67 | S-S-Csac-67-a-A-20 | 16S rRNA | Clostridium saccharogumia |
| Betthio1001 | L-G-bThiob-1001-a-A-21 | 23S rRNA | Betaproteobacterial Thiobacilli |
| Creno445 | S-S-Cpoly-445-a-A-18 | 16S rRNA | Crenothrix polyspora |
| Cp653-A | | 16S rRNA | Crenothrix polyspora sequence cluster I |
| Cp653-B | | 16S rRNA | Crenothrix polyspora sequence cluster II-IV |
| Cp1130-A | | 16S rRNA | Crenothrix polyspora sequence cluster I-II |
| Cp1130-B | | 16S rRNA | Crenothrix polyspora sequence cluster III-IV |
| VIB572a | | 16S rRNA | Genus Vibrio |
| VIB572b | | 16S rRNA | other Vibrio/Photobacterium |
| PSU730 | | 16S rRNA | Genus Pseudoalteromonas |
| SHEW227 | | 16S rRNA | Genus Shewanella |
| MX825b | | 16S rRNA | Methanosaetaceae subgroup |
| MX825c | | 16S rRNA | Methanosaetaceae subgroup |
| MX1361 | | 16S rRNA | Methanosaetaceae |
| MG1200b | | 16S rRNA | most Methanomicrobiales |
| MB311 | | 16S rRNA | Methanobacteriales |
| MC504 | | 16S rRNA | Methanocaldococcaceae |
| CST440 | | 16S rRNA | Group 1 clones (AC044 and AC051), closely related to Clostridium stercorarium |
| CTH1258 | | 16S rRNA | Group 2 clones (AC020 and AC033), closely related to Clostridium thermocellum |
| CUE1240 | | 16S rRNA | Group 3 clones (AC014 and AC036), closely related to Clostridium sp. strain XB90 |
| CUE647 | | 16S rRNA | Group 4 clones (AC007 and AC039) |
| BCE182 | | 16S rRNA | Group 5 clones (AC065 and MC049), closely related to Bacteroides
cellulosolvens |
| DEF988 | S-S-Bact-1020-a-A-22 | 16S rRNA | Defluvicoccus vanus-related organisms, cluster 2 |
| FMR0732 | | 16S rRNA | some iron-oxidising acidophilic Actinobacteria and some
acid mine drainage clones |
| ABl0199 | | 16S rRNA | some acidophilic Acidobacteriaceae and an acid mine
drainage clone |
| ABl1002 | | 16S rRNA | some acidophilic Acidobacteriaceae |
| TM1G0138 | | 16S rRNA | Group 1 Thiomonas species |
| TM2G0138 | | 16S rRNA | Group 2 Thiomonas species |
| WJ20646 | | 16S rRNA | acidophilic gamma-Proteobacteria WJ2 and PK51 and some acid mine drainage clones |
| GALTS0084 | | 16S rRNA | acid mine drainage clones related to Gallionella ferruginea |
| BSC0459 | | 16S rRNA | acid mine drainage beta-proteobacterial clones |
| LGC0355 | | 16S rRNA | Firmicutes (Low G+C gram-positive bacteria) |
| ATT0223 | | 16S rRNA | Acidithiobacillus thiooxidans |
| Ntspa1431 | S-*-Ntspa-1431-a-A-18 | 16S rRNA | Sublineage I of the genus Nitrospira |
| Ntspa1151 | S-*-Ntspa-1151-a-A-20 | 16S rRNA | Sublineage II of the genus Nitrospira |
| Apr820 | S-*-Apr-0820-a-A-21 | 16S rRNA | Cand. “Anammoxoglobus propionicus” |
| E2d21002 | S-*-Rhob-1002-a-A-18 | 16S rRNA | some Rhodobacteraceae |
| E1e3 1150 | S-*-Ualp-1150-a-A-18 | 16S rRNA | some unclassified Alphaproteobacteria |
| Ualp-1109 | S-*-Ualp-1109-a-A-18 | 16S rRNA | some unclassified Alphaproteobacteria |
| Sphm-0742 | S-*-Sphm-0742-a-A-18 | 16S rRNA | some Sphingomonadales |
| Bete-1250 | S-*-Bete-1250-a-A-18 | 16S rRNA | some unclassified Bacteroidetes |
| Bete-1419 | S-*-Bete-1419-a-A-18 | 16S rRNA | some unclassified Bacteroidetes |
| Chro-1137 | S-*-Chro-1137-a-A-18 | 16S rRNA | some Chromatiales |
| Caul-1262 | S-*-Caul-1262-a-A-18 | 16S rRNA | some Caulobacterales |
| Ubac-1430 | S-*-Ubac-1430-a-A-18 | 16S rRNA | some unclassified Bacteria |
| Ubac-1241 | S-*-Ubac-1241-a-A-18 | 16S rRNA | some unclassified Bacteria |
| uBet-0984 | S-*-uBet-0984-a-A-18 | 16S rRNA | some unclassified Betaproteobacteria |
| Ubet-0834 | S-*-Ubet-0834-a-A-18 | 16S rRNA | some unclassified Betaproteobacteria |
| Ubet-0990 | S-*-Ubet-0990-a-A-21 | 16S rRNA | some unclassified Betaproteobacteria |
| Rhoc-0998 | S-*-Rhoc-0998-a-A-18 | 16S rRNA | some Rhodocyclaceae |
| Rhoc-1425 | S-*-Rhoc-1425-a-A-18 | 16S rRNA | some unclassified Rhodocyclaceae |
| Thio-1032 | S-*-Thio-1032-a-A-18 | 16S rRNA | some Thiobacillus and some unclassified Betaproteobacteria |
| Ach-221 | | 16S rRNA | Achromobacter xylosoxidans |
| Alc-476 | | 16S rRNA | Alcaligenes faecalis |
| Univ907 | S-*-Univ-0907-a-A-18 | 16S rRNA | all organism |
| Eub927 | S-D-Eub-0927-a-A-18 | 16S rRNA | most Bacteria |
| NmII | S-S-Nsom-0120-a-A-20 | 16S rRNA | Nitrosomonas communis lineage |
| NmIII | S-S-Nsom-0998-a-A-21 | 16S rRNA | Nitrosomonas marina lineage |
| NmIV | S-S-Nsom-1004-a-A-19 | 16S rRNA | Nitrosomonas cryotolerans lineage |
| Nsr1145 | S-*-Nsr-1145-a-A-18 | 16S rRNA | Nitrospira spp. |
| Nsc825 | S-*-Nsc-0825-a-A-18 | 16S rRNA | betaproteobacterial AOB |
| Nsr989 | S-S-Nsr-0989-a-A-18 | 16S rRNA | Nitrospira marina |
| Nsn227 | S-*-Nsn-0227-a-A-18 | 16S rRNA | Nitrospina gracilis |
| Ncc214 | S-S-Ncc-0214-a-A-18 | 16S rRNA | Nitrococcus mobilis |
| Flavo1004 | S-St-Iso8-1004-a-A-18 | 16S rRNA | Flavobacterium isolate 8 |
| CLOBU1022 | S-S-Cl.bu.-1022-a-A-18 | 16S rRNA | Clostridium butyricum, Elbe `river snowapos isolates 9.1, 9.2, 9.4 |
| AERO1244 | S-G-Aero-1244-a-A-21 | 16S rRNA | Aeromonadaceae |
| HGC236 | | 16S rRNA | Actinobacteria |
| Ppu646 | S-G-Ppu-0646-a-A-18 | 16S rRNA | Pseudomonas spp. |
| AQUA841 | S-G-Aqua-0841-a-A-21 | 16S rRNA | genus Aquabacterium |
| MYBM1171 | S-G-Mybm-1171-a-A-18 | 16S rRNA | genus Methylobacterium |
| AcI-840-1 (AC840a) | | 16S rRNA | Subgroup of acI lineage (Actinobacteria) |
| AcI-840-2 (AC840b) | | 16S rRNA | Subgroup of acI lineage (Actinobacteria) |
| AcI-1214 | | 16S rRNA | acI lineage of limnic Actinobacteria |
| KO 01 | S-S-Thth-0068-a-A-19 | 16S rRNA | Thermus thermophilus |
| KO 02 | S-G-Art1-1014-a-A-19 | 16S rRNA | Arthrobacter sp. |
| KO 03 | S-G-Art2-1012-a-A-20 | 16S rRNA | Arthrobacter sp. |
| KO 04 | S-G-Art3-1038-a-A-21 | 16S rRNA | Arthrobacter sp |
| KO 05 | S-S-Agrtu-0136-a-A-23 | 16S rRNA | Agrobacterium tumefaciens |
| KO 06 | S-S-Agrtu-0133-a-A-23 | 16S rRNA | Agrobacterium tumefaciens |
| KO 07 | S-G-Thact-0623-a-A-22 | 16S rRNA | genus Thermoactinomyces |
| KO 08 | S-G-Strp-1246-a-A-21 | 16S rRNA | genus Streptomyces |
| KO 09 | S-G-Strth-0136-a-A-19 | 16S rRNA | genus Streptomyces (S. thermonitrificans, S. thermogriseus, S. thermovulgaris) |
| KO 10 | S-S-Thmch-1437-a-A-20 | 16S rRNA | Thermomonospora chromogena |
| KO 11 | S-S-Thmcu-0447-a-A-22 | 16S rRNA | Thermomonospora curvata |
| KO 12 | S-S-Psae-0148-a-A-22 | 16S rRNA | Many Pseudomonas species |
| KO 201 | S-*-Aaacc-0644-a-A-18 | 16S rRNA | Acidovorax avenae subsp. avenae/cattleyae/citrulli |
| KO 202 | S-*-Aaacc-0443-a-A-19 | 16S rRNA | Acidovorax avenae avenae/cattleyae/citrulli |
| KO 203 | S-S-RPsBD-0069-a-A-18 | 16S rRNA | Ralstonia solanacearum, Pseudomonas syzygii |
| KO 204 | S-*-Xanth-0210-a-A-18 | 16S rRNA | Xanthomonas translucens, X. albiineans, X. melonis, X. sacchari, X. hyacinthi, X. campestris |
| KO 205 | S-S-Azbr-1012-a-A-19 | 16S rRNA | Azospirillum brasilense, Roseomonas fauriae |
| KO 206 | S-S-Hrub-0460-a-A-25 | 16S rRNA | Herbaspirillum rubrisubalbica |
| KO 207 | S-S-Gdia-1012-a-A-18 | 16S rRNA | Gluconacetobacter diazotrophicus |
| KO 208 | S-S-Gliq-0583-a-A-18 | 16S rRNA | Gluconacetobacter liquefaciens |
| KO 209 | S-S-XfasB-0834-a-A-19 | 16S rRNA | Xylella fastidiosa |
| KO 210 | S-S-XfastC-0078-a-A-21 | 16S rRNA | Xylella fastidiosa |
| KO 211 | S-*-Psalc-0631-a-A-21 | 16S rRNA | Pseudomonas alcaligenes, P. resinovorans |
| KO 212 | S-S-Eamya-0444-a-A-18 | 16S rRNA | Erwinia amylovora |
| KO 213 | S-S-Eamyb-0445-a-A-18 | 16S rRNA | Erwinia amylovora |
| KO 214 | S-*-Yenta-0443-a-A-19 | 16S rRNA | Yersinia enterocolitica, Y. kristensenii |
| KO 215 | S-S-Yentb-0443-a-A-19 | 16S rRNA | Yersinia enterocolitica |
| KO 216 | S-S-Stpy-0174-a-A-21 | 16S rRNA | Streptococcus pyogenes |
| KO 218 | S-S-Saur-0069-a-A-19 | 16S rRNA | Staphylococcus aureus, S. haemolyticus |
| KO 219 | S-*-HpylA-0162-a-A-24 | 16S rRNA | Helicobacter pylori, H. nemestrinae, H. cetorum, H. tursipssae, H. heilmanii |
| KO 221 | S-S-CfalA-0062-a-A-20 | 16S rRNA | Clostridium fallax |
| KO 222 | S-S-CfalB-1443-a-A-19 | 16S rRNA | Clostridium fallax |
| KO 223 | S-S-CtetA-0116-a-A-19 | 16S rRNA | Clostridium tetani |
| KO 224 | S-S-CtetB-0746-a-A-19 | 16S rRNA | Clostridium tetani |
| KO 225 | S-S-Cperf-0185-a-A-20 | 16S rRNA | Clostridium perfringens |
| KO 226 | S-*-Cbut-0183-a-A-21 | 16S rRNA | Clostridium butyricum, C. kainantoi |
| KO 227 | S-S-CdifC-1009-a-A-19 | 16S rRNA | Clostridium difficle |
| KO 228 | S-*-AhydA-0466-a-A-23 | 16S rRNA | Aeromonas hydrophila, A. Salmonicida |
| KO 229 | S-*-AhydB-0454-a-A-21 | 16S rRNA | Aeromonas hydrophila, A. Salmonicida |
| KO 230 | S-*-Nmena-0454-a-A-20 | 16S rRNA | Neisseria meningitidis, N.polysaccharea, N.lactima |
| KO 231 | S-*-Nmenb-0454-a-A-20 | 16S rRNA | Neisseria meningitidis, N.polysaccharea, N.lactima |
| KO 232 | S-*-Vchol-0122-a-A-18 | 16S rRNA | Vibrio cholerae, V. mimicus |
| KO 233 | S-S-Alwo-0574-a-A-18 | 16S rRNA | Acinetobacter lwoffii, Sphingobacterium |
| KO 235 | S-G-Strep-655-a-A-19 | 16S rRNA | genus Streptococcus |
| DEN67 | | 16S rRNA | Methanol-utilizing denitrifying cluster |
| DEN124 | | 16S rRNA | Acetate-denitrifying cluster |
| DEN581 | | 16S rRNA | Acetate-denitrifying cluster |
| CteA | S-S-Cte-0462-a-A-20 | 16S rRNA | Comamonas testosteroni |
| Nm143-446-1 | | 16S rRNA | Nitrosomonas sp. Nm143-related clones |
| Nm143-446-2 | | 16S rRNA | Nitrosomonas sp. Nm143-related clones |
| Nspmar62 | | 16S rRNA | Nitrospira marina-related clones |
| Nmar831 | | 16S rRNA | Nitrosomonas marina-related clones |
| DSS449 | | 16S rRNA | Some Desulfosarcina |
| DSS138 | | 16S rRNA | Few Desulfobacteraceae |
| DSR1256 | | 16S rRNA | Few Desulfobulbaceae |
| Dblb1243 | | 16S rRNA | Desulfobacterium catecholicum-related strains LacK1, LacK4 and LacK9 |
| Dcap1031 | | 16S rRNA | Few Desulfocapsa including strain LacK10 |
| Dblb1032 | | 16S rRNA | Desulfobacterium catecholicum and related strains LacK1 and LacK9 |
| Dsr186 | | 16S rRNA | Desulfobacterium catecholicum and related strains LacK1 and LacK9 |
| DSV185 | | 16S rRNA | Desulfovibrio acrylicus |
| DSV445 | | 16S rRNA | Desulfovibrio strain EtOHK3 |
| DSV64 | | 16S rRNA | Desulfovibrio strain EtOHK2 |
| OcraDEL1 | | 16S rRNA | Deltaproteobacterial symbiont 1 of Olavius crassitunicatus |
| OcraDEL2 | | 16S rRNA | Deltaproteobacterial symbiont 2 of Olavius crassitunicatus |
| OcraDEL3 | | 16S rRNA | Deltaproteobacterial symbiont 3 of Olavius crassitunicatus |
| DSBAC357 | | 16S rRNA | Most Desulfobacteraceae and Syntrophobacteraceae |
| EPSY549 | S-C-eProt-0549-a-A-18 | 16S rRNA | Epsilonproteobacteria |
| EPSY914 | S-C-eProt-0914-a-A-18 | 16S rRNA | Epsilonproteobacteria |
| EPSY1384 | S-C-eProt-1384-a-A-18 | 16S rRNA | Epsilonproteobacteria |
| MB | | 16S rRNA | Methylobacterium |
| PS5 | | 16S rRNA | Pseudomonas synxantha and related species of the Pseudomonas fluorescens subgroup |
| E11 | | 16S rRNA | Eubacteria |
| Nost993 | S-*-Nost-993-a-A-18 | 16S rRNA | Filamentous Alphaproteobacteria |
| PPx1002 | S-*-PPx-1002-a-A-18 | 16S rRNA | Filamentous Alphaproteobacteria |
| EU25-1238 | S-*-EU25-1238-a-A-20 | 16S rRNA | Filamentous Chloroflexi |
| Cribseq | S-S-Crib-0064-a-A-20 | 16S rRNA | Criblamydia sequanensis |
| Usporo489 | | 16S rRNA | a group of unclassified Clostridiales related to Sporobacter |
| DSV827 | | 16S rRNA | members of the genus Desulfovibrio |
| DSBA1017 | | 16S rRNA | Desulfobacca acetoxidans |
| Psc-523 | | 16S rRNA | Piscichlamydia salmonis (and few other unrelated bacteria) |
| Psc-II | | 16S rRNA | Piscichlamydia salmonis |
| TG1-Rsd17 | | 16S rRNA | specific for phylotypes Rs-D17 amp RsTG1 in candidate phylum Termite Group 1 |
| TG1-HsTG1-248 | | 16S rRNA | specific for phylotype HsTG1 in candidate phylum Termite Group 1 |
| TG1-T-287 | | 16S rRNA | most members of subphylum 1 of candidate phylum Termite Group 1 |
| TG1-HsTG3-193 | | 16S rRNA | specific for phylotype HsTG3 in candidate phylum Termite Group 1 |
| TG1-RsD95-123 | | 16S rRNA | specific for phylotypes Rs-D95, RsDe11, RsDr18 in candidate phylum Termite Group 1 |
| TG1-RsD43-64 | | 16S rRNA | specific for phylotypes Rs-D43, RsPgL2-11, RsPgO2-18 in candidate phylum Termite Group |
| TG1-GfMT-287 | | 16S rRNA | specific for phylotype GfMT5-8 in candidate phylum Termite Group 1 |
| Pint649 | S-S-P.int-0649-a-A-19 | 16S rRNA | Prevotella intermedia |
| Pnig657 | S-S-P.nig-0657-a-A-19 | 16S rRNA | Prevotella nigrescens |
| Pden654 | S-S-P.den-0654-a-A-19 | 16S rRNA | Prevotella denticola |
| FUS664 | S-G-Fuso-0664-a-A-19 | 16S rRNA | most Fusobacterium sp. |
| SAR92_627 | | 16S rRNA | SAR92 clade |
| TBD1419 | S-S-Tb.den-1419-a-A-18 | 16S rRNA | Thiobacillus denitrificans |
| TBD121 | S-*-Tbdt-0121-a-A-18 | 16S rRNA | Thiobacillus denitrificans and Thiobacillus thioparus |
| TMD131 | S-S-Tm.den-0131-a-A-18 | 16S rRNA | Thiomicrospira denitrificans |
| RHGA702 | S-S-Nsgar-702-a-A-18 | 16S rRNA | “Candidatus Nitrososphaera gargensis” |
| Tbm1282 | S-G-Tbm-1282-a-A-18 | 16S rRNA | most of Thermoanaerobacterium sp. |
| Tbmthsacc184 | S-S-Tbmthsacc-0184-a-A-18 | 16S rRNA | Thermoanaerobacterium thermosaccharolyticum |
| Ccs432 | S-G-Ccs-0432-a-A-18 | 16S rRNA | most of Caldicellulosiruptor sp. |
| TG1End1023T1 | | 16S rRNA | Endomicrobia phylotypes ZnTc-1, HsTc-1, RsTG1 |
| TG1End1027 | | 16S rRNA | Most Endomicrobia lineages |
| TG1-TriG1-Hsj | | 16S rRNA | Endomicrobia HsTc-1 |
| TG1-Joe-Kf | | 16S rRNA | Endomicrobia phylotype KfJe-1 |
| TG1-Dev-Nca | | 16S rRNA | Endomicrobia phylotype NcDv-1 |
| Flg-Dine-Hsj | | 18S rRNA | Dinenympha sp. HsDnA |
| Flg-Tricho1-Hsj | | 18S rRNA | Trichonympha sp. HsTcA |
| Flg-Euc-Hsj | | 18S rRNA | Eucomonympha sp. HsEcA |
| Flg-Joe-Kfl | | 18S rRNA | Joenia sp. KfJeA of K. flavicollis |
| ACIDO228 | | 16S rRNA | Acidobacteria subdivision 1 |
| Bfu613 | | 16S rRNA | Candidatus “Brocadia fulgida” |
| Oilv/OcraGAM1 | | 16S rRNA | Olavius ilvae / O. crassitunicatus Gamma 1 symbiont |
| Oalg/OilvGAM3 | | 16S rRNA | Olavius algarvensis / O. ilvae Gamma 3 symbionts |
| OilvDEL1 | | 16S rRNA | Olavius ilvae Delta 1 symbiont |
| Oalg/OilvDEL3 | | 16S rRNA | Olavius algarvensis/ O. ilvae Delta 3 symbiont |
| OalgDEL4 | | 16S rRNA | Olavius algarvensis Delta 4 symbiont |
| SPIRO | | 16S rRNA | Olavius algarvensis / O. crassitunicatus /O. loisae spirochete symbionts |
| Beta1 | | 16S rRNA | Betaproteobacteria |
| Beta2 | | 16S rRNA | Betaproteobacteria |
| Beta3 | | 16S rRNA | Betaproteobacteria |
| Beta4 | | 16S rRNA | Betaproteobacteria |
| Burkho4A | | 16S rRNA | Most Burkholderia |
| Burkho4B | | 16S rRNA | Burkholderia caribensis and B. caryophylli |
| Burkho4C | | 16S rRNA | Burkholderia glathei and B. multivorans |
| Burkho4D | | 16S rRNA | Most Burkholderia |
| Mallei 2 | | 16S rRNA | Burkholderia pseudomallei |
| Mallei 3 | | 16S rRNA | Burkholderia pseudomallei |
| Pic1 | | 16S rRNA | Ralstonia pickettii |
| EUB342 | | 16S rRNA | Most Bacteria |
| BKH1 | | 16S rRNA | Candidatus Burkholderia kirkii |
| BKH2 | | 16S rRNA | Candidatus Burkholderia kirkii, B. glathei, M2-K3 |
| BKH3 | | 16S rRNA | Candidatus Burkholderia kirkii |
| BKH4 | | 16S rRNA | Candidatus Burkholderia kirkii, M2-K4, M2-K6 |
| BKH5 | | 16S rRNA | Burkholderia andropogonis |
| BKH6 | | 16S rRNA | Burkholderia andropogonis |
| BKH7 | | 16S rRNA | Burkholderia caryophylli |
| BKH8 | | 16S rRNA | Burkholderia caryophylli |
| BKH9 | | 16S rRNA | Burkholderia caryophylli |
| BKH10 | | 16S rRNA | Burkholderia caryophylli |
| BKH11 | | 16S rRNA | Burkholderia glathei, Burkholderia sp. |
| BKH12 | | 16S rRNA | Burkholderia glathei, Burkholderia sp. |
| BKH13 | | 16S rRNA | Burkholderia glathei, Burkholderia sp. |
| BKH14 | | 16S rRNA | Burkholderia glathei, Burkholderia sp. |
| BKH15 | | 16S rRNA | Burkholderia sorididicola |
| BKH16 | | 16S rRNA | Burkholderia sorididicola |
| BKH17 | | 16S rRNA | Candidatus Burkholderia nigropunctata |
| BKH18 | | 16S rRNA | Candidatus Burkholderia nigropunctata |
| BKH19 | | 16S rRNA | Candidatus Burkholderia nigropunctata |
| BKH20 | | 16S rRNA | Candidatus Burkholderia nigropunctata |
| BKH21 | | 16S rRNA | Burkholderia sp. AB119 (AF364859) |
| BKH22 | | 16S rRNA | Burkholderia sp. |
| BKH23 | | 16S rRNA | Uncultured soil bacterium |
| BKH24 | | 16S rRNA | Burkholderia terrae, B. hospita, Burkholderia sp. |
| BKH25 | | 16S rRNA | Burkholderia sp. |
| BKH26 | | 16S rRNA | Burkholderia phymatum STM815 (T) (AJ302312) |
| BKH27 | | 16S rRNA | Burkholderia phymatum STM815 (T) (AJ302312) |
| BKH28 | | 16S rRNA | Burkholderia kururiensis, B. brasilensis |
| BKH29 | | 16S rRNA | Burkholderia kururiensis, B. brasilensis |
| BKH30 | | 16S rRNA | Burkholderia sp. |
| BKH31 | | 16S rRNA | Burkholderia sp. |
| BKH32 | | 16S rRNA | Burkholderia ambifaria (T) (AF043302) |
| BKH33 | | 16S rRNA | Burkholderia ambifaria (T) (AF043302) |
| BKH34 | | 16S rRNA | Burkholderia mallei, B. pseudomallei |
| BKH35 | | 16S rRNA | Burkholderia mallei, B. pseudomallei |
| BKH36 | | 16S rRNA | Burkholderia mallei, B. pseudomallei |
| BKH37 | | 16S rRNA | Burkholderia pseudomallei, B. thailandensis |
| BKH38 | | 16S rRNA | Burkholderia ambifaria, B. anthina, B. cenocepacia, B. cepacia, B. multivorans, B. pyrrocinia, B. stabilis, B. ubonensis, B. vietnamiensis, Burkholderia sp. |
| BKH39 | | 16S rRNA | Burkholderia cenocepacia, B. cepacia, B. multivorans, B. pyrrocinia, B. tropica, B. unamae, B. vietnamiensis, Burkholderia sp., M1-K8, M1-K10, M1-K11, M1-K13, M1-K14, M2-K6, M2-K81 |
| BKH40 | | 16S rRNA | Burkholderia mallei, B. pseudomallei |
| BKH41 | | 16S rRNA | Burkholderia pyrrocinia (T) (U96930) |
| BKH42 | | 16S rRNA | Burkholderia ambifaria, B. cepacia, B. pyrrocinia, B. stabilis, B. vietnamiensis, Burkholderia sp., M2-K5, M2-K9, M2-K11, M2-K13, M2-K72, M3-K3 |
| BKH43 | | 16S rRNA | Burkholderia ambifaria, B. anthina, B. cenocepacia, B. cepacia, B. multivorans, B. pyrrocinia, B. ubonensis, B. vietnamiensis, Burkholderia sp. |
| BKH45 | | 16S rRNA | Burkholderia cenocepacia, B. cepacia, B. dolosa, B. multivorans, B. ubonensis, B. vietnamiensis, Burkholderia sp., Rhodocyclus tenuis DSM110 (D16209) |
| BKH46 | | 16S rRNA | Burkholderia gladioli, B. glumae, B. plantarii, Burkholderia sp. |
| BKH47 | | 16S rRNA | Burkholderia gladioli, B. glumae, B. plantarii, Burkholderia sp. |
| BKH48 | | 16S rRNA | Burkholderia andropogonis, B. glathei, B. plantarii, B. sordidicola Jm120 (DQ256491), B. tropica, Burkholderia sp., Candidatus Burkholderia nigropunctata, uncultured eubacterium WD263 (AJ292641), L1-K13, |
| BKH49 | | 16S rRNA | Burkholderia fungorum, Burkholderia sp., symbionts of Tetraponeri binghami and Asellus aquaticus |
| BKH50 | | 16S rRNA | Burkholderia phytofirmans amp Burkholderia sp. NAH1 (AF247815) |
| BKH51 | | 16S rRNA | Burkholderia fungorum, B. koreensis, B. phenazinium, B. phytofirmans, B. unamae, Burkholderia sp., symbionts of Tetraponeri binghami and Asellus aquaticus, uncultured eubacterium WD202 amp WD285 (AJ292637 amp AJ292644) |
| BKH52 | | 16S rRNA | Burkholderia xenovorans (T) (U86373) |
| BKH53 | | 16S rRNA | Burkholderia graminis, Burkholderia sp. 54 (AY238504) |
| BKH54 | | 16S rRNA | Burkholderia caryophylli, B. graminis, Burkholderia sp. |
| BKH55 | | 16S rRNA | Burkholderia terricola (T) (AY040362), Burkholderia sp. |
| BKH56 | | 16S rRNA | Burkholderia cepacia, B. phenoliruptrix (T) (AY435213), Burkholderia sp. |
| BKH57 | | 16S rRNA | Burkholderia cepacia, B. phenoliruptrix (T) (AY435213), Burkholderia sp. |
| BKH58 | | 16S rRNA | Burkholderia tuberum (T) (AJ302311), Burkholderia sp. |
| BKH59 | | 16S rRNA | Burkholderia tuberum (T) (AJ302311), Burkholderia sp., L19-K6, L19-K12, L19-K47, L20-K36 |
| BKH60 | | 16S rRNA | Burkholderia koreensis, B. tuberum (T) (AJ302311), Burkholderia sp., Thauera sp. O (AJ277704) |
| BKH61 | | 16S rRNA | Burkholderia bryophila, B. megapolitana (T) (AM489502), B. phenazinium, Burkholderia sp., L1-K48, L19-K74, L20-K81, M1-K6, M1-K7, M1-K24, M2-K4, M2-K14, M3-K2, M3-K6 |
| BKH62 | | 16S rRNA | Burkholderia phenazinium, Burkholderia sp. |
| BKH63 | | 16S rRNA | Burkholderia caribiensis, Burkholderia sp. |
| BKH64 | | 16S rRNA | Burkholderia caribiensis, Burkholderia sp. |
| BKH65 | | 16S rRNA | Burkholderia cepacia, Burkholderia sp. |
| BKH66 | | 16S rRNA | Burkholderia cepacia, Candidatus Burkholderia calva, Burkholderia sp. |
| BKH67 | | 16S rRNA | Burkholderia hospita, B. terrae, Burkholderia sp. |
| BKH68 | | 16S rRNA | Burkholderia phymatum (T) (AJ302312), B. hospita, B. terrae KMY01 (AB201284) |
| BKH69 | | 16S rRNA | Burkholderia tropica, Burkholderia sp. |
| BKH70 | | 16S rRNA | Burkholderia unamae |
| BKH71 | | 16S rRNA | Burkholderia brasilensis M130 (AJ238360), B. kururiensis, B. sacchari (T) (AF263278), Burkholderia sp. |
| BKH72 | | 16S rRNA | Burkholderia nodosa, B. sacchari (T) (AF263278), B. tropica, B. unamae, Burkholderia sp., L19-K13, L19-K15, L19-K20, L19-K39, |
| BKH73 | | 16S rRNA | Pandoraea norimbergensis |
| BKH74 | | 16S rRNA | Pandoraea norimbergensis |
| BKH75 | | 16S rRNA | Pandoraea apista, P. norimbergensis, P. pnomenusa, P. pulmonicola, P. sputorum, Pandoraea sp., Burkholderia sp. |
| BKH76 | | 16S rRNA | Candidatus Burkholderia calva (AY277697) |
| BKH77 | | 16S rRNA | Candidatus Burkholderia calva (AY277697) |
| BKH78 | | 16S rRNA | Candidatus Burkholderia calva (AY277697), Burkholderia cepacia (AY512825), Burkholderia sp. |
| BKH79 | | 16S rRNA | Candidatus Burkholderia calva (AY277697), Candidatus Burkholderia nigropunctata (AY277698), Burkholderia cepacia (AY512825), Burkholderia sp. |
| BKH80 | | 16S rRNA | Candidatus Burkholderia kirkii, Candidatus Burkholderia nigropunctata (AY277698), Burkholderia cepacia (AY512825), Burkholderia sp. |
| BKH81 | | 16S rRNA | Pandoraea sputorum (T) (AF139176), Pandoraea sp. |
| BKH82 | | 16S rRNA | Pandoraea pulmonica, Burkholderia sp., uncultured eubacterium WD285 |
| BKH83 | | 16S rRNA | Pandoraea apista, Pandoraea sp., Burkholderia sp. JB1 (X92188) |
| BKH84 | | 16S rRNA | Pandoraea pnomenusa, P. pulmonicola, Pandoraea sp., Burkholderia sp. MN 182.2 (AJ313026) |
| BKH85 | | 16S rRNA | Candidatus Burkholderia calva (AY277697), Candidatus Burkholderia kirkii, Candidatus Burkholderia nigropunctata (AY277698), Burkholderia cepacia (AY512825), Burkholderia sp. |
| BKH86 | | 16S rRNA | Burkholderia bryophila 1S18 (T) (AM489499), B. glathei, Burkholderia sp., L1-K13, L2-K5, L19-K66, L19-K74, M2-K3, M2-K7, M2-K12, M3-K1, M3-K4, M3-K5, M3-K7, M3-K8, M3-K9, M3-K10, M3-K14, M3-K15 |
| BKH87 | | 16S rRNA | Burkholderia andropogonis, Burkholderia sp., |
| BKH88 | | 16S rRNA | Burkholderia caryophylli, Burkholderia sp. |
| BKH89 | | 16S rRNA | Burkholderia cenocepacia LMG 12615 (AF265235), B. cepacia, Burkholderia sp., M2-K6, M2-K81, |
| BKH90 | | 16S rRNA | Burkholderia ambifaria, B. cepacia, B. pyrrocinia, B. stabilis (T) (AF148554), B. vietnamiensis, Burkholderia sp., M2-K5, M2-K9, M2-K11, M2-K13, M2-K72, M3-K3 |
| BKH91 | | 16S rRNA | Burkholderia cepacia, B. glathei, B. multivorans, Burkholderia sp. |
| BKH92 | | 16S rRNA | Burkholderia cenocepacia (T) (AF148556), B. cepacia, B. dolosa (T) (AF175314), B. multivorans, B. ubonensis (T) (AB030584), B. vietnamiensis, Burkholderia sp., Rhodocyclus tenuis DSM110 (D16209) |
| BKH93 | | 16S rRNA | Burkholderia gladioli, Burkholderia sp. |
| BKH94 | | 16S rRNA | Burkholderia fungorum, Burkholderia sp., symbionts of Tetraponeri binghami and Asellus aquaticus |
| BKH95 | | 16S rRNA | Burkholderia fungorum, Burkholderia sp., symbionts of Tetraponeri binghami and Asellus aquaticus |
| BKH96 | | 16S rRNA | Burkholderia bryophila 1S18 (T) (AM489499), B. caledonica (T) (AF215704), B. phenazinium, Burkholderia sp. |
| BKH97 | | 16S rRNA | Burkholderia pseudomallei C7532 amp C6756 (AJ616911 amp AJ616912) |
| BKH98 | | 16S rRNA | Burkholderia pseudomallei C7532 amp C6756 (AJ616911 amp AJ616912) |
| BKH99 | | 16S rRNA | Burkholderia cepacia (M22518) |
| BKH100 | | 16S rRNA | Burkholderia gladioli, Burkholderia sp. |
| BKH101 | | 16S rRNA | Burkholderia gladioli |
| BKH102 | | 16S rRNA | Beta proteobacterium A35-1 (AY049942) |
| BKH103 | | 16S rRNA | Burkholderia multivorans AU0127 (AY486372) |
| BKH104 | | 16S rRNA | Uncultured bacterium KRA30-09 (AY081989) |
| BKH105 | | 16S rRNA | Uncultured bacterium KRA30-09 (AY081989) |
| BKH106 | | 16S rRNA | Uncultured bacterium KRA30-09 (AY081989) |
| BKH107 | | 16S rRNA | Uncultured bacterium clone TM08 (AY838516) |
| BKH108 | | 16S rRNA | Burkholderia xenovorans LB400 (T) (U86373), Burkholderia sp., Ralstonia sp. 1263a (AB054961) amp Ralstonia sp. JMP134 (AF139729) |
| BKH109 | | 16S rRNA | Burkholderia bryophila 1S18 (T) (AM489499), B. caledonica (T) (AF215704), B. phenazinium, Burkholderia sp. |
| BKH110 | | 16S rRNA | Burkholderia sp. NAP1 (AF361021) |
| BKH111 | | 16S rRNA | Burkholderia sp. NAP1 (AF361021) |
| BKH112 | | 16S rRNA | Burkholderia sp. NAP1 (AF361021) |
| BKH113 | | 16S rRNA | Burkholderia plantarii (T) (U96932), uncultured bacterium clone GPT2b (AY706439) |
| BKH114 | | 16S rRNA | uncultured bacterium clone GPT2b (AY706439) amp uncultured bacterium clone G1a (AY706424) |
| BKH115 | | 16S rRNA | Burkholderia sp. 418 (AY580068 amp AY520839) |
| BKH116 | | 16S rRNA | Burkholderia sp. UCT 29 (AY178062), Burkholderia sp. Cses4 (AY178063), L2-K30 |
| BKH117 | | 16S rRNA | Burkholderia cepacia strain ATCC 55487 (AY741358), Burkholderia sp. |
| BKH118 | | 16S rRNA | Burkholderia sp. |
| BKH119 | | 16S rRNA | Burkholderia sp., L19-K2, L19-K31 |
| BKH120 | | 16S rRNA | Burkholderia sp. |
| BKH121 | | 16S rRNA | Burkholderia sp. B6 (AJ605717) |
| BKH122 | | 16S rRNA | Burkholderia sp. B6 (AJ605717) |
| BKH123 | | 16S rRNA | Burkholderia sp. B6 (AJ605717) |
| BKH124 | | 16S rRNA | Burkholderia sp. B6 (AJ605717) |
| BKH125 | | 16S rRNA | Burkholderia sp. 14 (AY238506) |
| BKH126 | | 16S rRNA | Burkholderia terrae KMY01 amp KMY02 (AB201284 amp AB201285), Burkholderia sp. |
| BKH127 | | 16S rRNA | Burkholderia ferrariae FeGl01 (DQ514537), bacterium strains |
| BKH128 | | 16S rRNA | Burkholderia sp. BR3437 (AY773189), Burkholderia sp. BR3464 (AY773194) |
| BKH129 | | 16S rRNA | Burkholderia sp. BR3437 (AY773189), Burkholderia sp. BR3464 (AY773194) |
| BKH130 | | 16S rRNA | Burkholderia nodosa R-22632 amp R-25486 (AM284970 amp AM284972), Burkholderia sp. Br3461 (AY773192 amp AY533861), Burkholderia sp. BR3470 (AY773198), Burkholderia sp. IBRC204 (DQ381722) |
| BKH131 | | 16S rRNA | Uncultured bacterium clone 015B-A07 (AY662004), uncultured beta proteobacterium Elb271 (AJ421941), M3-K7 |
| BKH132 | | 16S rRNA | uncultured eubacterium WD2116 (AJ292648), uncultured eubacterium WD2114 (AJ292647), L19-K36 |
| Bnix-64 | | 16S rRNA | Candidatus Endonucleobacter bathymodioli |
| Bnix-643 | | 16S rRNA | Candidatus Endonucleobacter bathymodioli |
| Bnix-1249 | | 16S rRNA | Candidatus Endonucleobacter bathymodioli |
| tios_434 | S-G-Tios-0434-a-A-20 | 16S rRNA | cluster TIOS44 |
| HHY-T5 | S-*-Hhy-T5-654-a-A-18 | 16S rRNA | Clone T5, micromanipulated from sludge |
| HHY-654 | S-*-Hhy-654-a-A-18 | 16S rRNA | several Haliscomenobacter species among others the type strain and an isolate named Plant1 Iso10B |
| DDK12 | | 16S rRNA | Treponema sp. DDKL-12 |
| DDK20 | | 16S rRNA | Treponema sp. DDKL-20 |
| hspec925 | | 16S rRNA | Candidatus Paraholospora nucleivisitans |
| Rs-N31-197 | S-S-RsN31-0197-a-A-18 | 16S rRNA | specific for phylotype Rs-N31 (e.g. Can. Desulfovibrio trichonymphae) |
| ZnDsv-02-471 | S-S-ZnDv2-0471-a-A-18 | 16S rRNA | specific for phylotype ZnDsv-02 in genus Desulfovibrio |
| SUL90 | S-*-Sul-0090-a-A-18 | 16S rRNA | Subgroup of Epsilonproteobacteria (Uncultured Helicobacteraceae, Clone GD17b, Clone GD17a) |
| Symco2 | | 16S rRNA | endosymbiont of Codakia orbicularis |
| GNS934 | | 16S rRNA | Chloroflexi sponge cluster I |
| POR1130 | | 16S rRNA | Candidate phylum “Poribacteria” |
| POR389 | | 16S rRNA | Candidate phylum “Poribacteria” |
| POR600 | | 16S rRNA | Candidate phylum “Poribacteria” |
| DSV119 | | 16S rRNA | Desulfovibrio strain L3 |
| DSV139 | | 16S rRNA | Desulfovibrio strain L7 |
| APC987 | | 18S rRNA | novel eukaryotic phyla, APC |
| HLB1074 | | 18S rRNA | Heterolobosea |
| VAH1044 | | 18S rRNA | Vahlkampfiidae |
| NAE1041 | | 18S rRNA | Naegleria spp. |
| Ccat | | 26S rRNA | Candida catenulata |
| Cint | | 26S rRNA | Candida intermedia |
| Geo | | 26S rRNA | Geotrichum sp. |
| Ylip | | 26S rRNA | Yarrowia lipolytica |
| DF198 | S-*Bact-0198-a-A-20 | 16S rRNA | Defluviicoccus related organisms, cluster III |
| DF1004 | S-*-Bact-1004-a-A-18 | 16S rRNA | Defluviicoccus related organisms, some cluster III |
| DF1013 | S-*Bact-0198-a-A-20 | 16S rRNA | Defluviicoccus related organisms. some cluster III |
| DF181A | S-*-Bact-0181-a-A-20 | 16S rRNA | Defluviicoccus vanus related organisms, some cluster IV |
| DF181B | S-*-Bact-0181-b-A-18 | 16S rRNA | Defluviicoccus related organisms, some cluster IV |
| Ana_434 | S-G-Bact-0434-a-A-21 | 16S rRNA | Candidatus Anadelfobacter veles |
| Cyrt_1438 | S-G-Cyrt-1438-a-A-18 | 16S rRNA | Candidatus Cyrtobacter comes |
| EUB338_V | S-D-Bact-0338-a-A-18 | 16S rRNA | Candidatus Cyrtobacter comes some Chloroflexi some Firmicutes some Proteobacteria |
| LS_HOL189 | L-P-Acido-0189-a-A-18 | 23S rRNA | Acidobacteria |
| SS_HOL1400 | S-P-Acido-1400-a-A-17 | 16S rRNA | Acidobacteria |
| LS_ALP544 | L-*-kan1–0544-a-A-18 | 23S rRNA | LS_LKC21_kan1 |
| LS_ALP761 | L-*-Sub7–0761-a-A-18 | 23S rRNA | Parts of Acidobacterial subgroup 7 (including LS_LKC21_kan1, DON29, DON30, DON31) |
| SS_subd7_UB55–585 | S-*-Sub7–0585-a-A-18 | 16S rRNA | Clone SS_LKC22_UB55, subgroup 7 SS_LKC22_UA71, SS_LKC21_kan1 |
| SS_subd7_UB55–632 | S-*-Sub7–0632-a-A-18 | 16S rRNA | Clone SS_LKC22_UB55, subgroup 7 SS_LKC22_UA71, SS_LKC21_kan1 |
| LS_subd8_SGB1223 | L-*-Sub8–1223-a-A-18 | 23S rRNA | Acidobacterial subgroup 8 LS_LKC11_kan2, LS_LKC22_kan3, LS_LKC11_kan4, LS_LKC21_kan5 (LS_LKC11_kan6), clone ZC6, G. fermentans, H. foetida |
| LS_subd8_SGB1420 | L-*-Sub8-1420-a-A-18 | 23S rRNA | Acidobacterial subgroup 8 LS_LKC11_kan2, LS_LKC22_kan3, LS_LKC11_kan4, LS_LKC21_kan5, LS_LKC11_kan6, clone ZC6, G. fermentans, H. foetida, |
| LS_GFER2787 | L-*-Gfer-2787-a-A-18 | 23S rRNA | G. fermentans and relatives (no LKC clones) |
| Bru-996 | | 16S rRNA | Brucella spp. |
| S-S-T.int-0442-a-A-18 | | 16S rRNA | Thiomonas intermedia |
| S-S-T.plum-450-a-A-18 | | 16S rRNA | Thiobacillus plumbophilus |
| S-S-H.neap-635-a-A-19 | | 16S rRNA | Halothiobacillus neapolitanus |
| RB454 | | 16S rRNA | Pirellula sp. strain SH1 |
| PIR1223 | | 16S rRNA | Genus Pirellula |
| ALF682 | S-Sc-aProt-0682-a-A-18 | 16S rRNA | Alphaproteobacteria from sludge anaerobic digesters |
| YDC69 | | 16S rRNA | uncultivated magnetotactic cocci (Candidatus Magnetococcus yuandaducum) |
| L2CG353 | | 23S rRNA | Leptospirillum ferriphilum 5-way CG |
| L2UBA353 | | 23S rRNA | Leptospirillum rubarum UBA |
| BDE525 | | 16S rRNA | Genus Bdellovibrio |
| Aceto2 | | 16S rRNA | Acetobacteraceae (excepted Acidiphilium, Acidocella, Acidisphaera, Paracraurococcus, Crauroccocus, Roseococcus) |
| Aceto3A | | 16S rRNA | Some Acetobacteraceae |
| Aceto3B | | 16S rRNA | Acetobacteraceae |
| Ace2 | | 16S rRNA | Acetobacter |
| Acidomonas2 | | 16S rRNA | Acidomonas methanolica |
| Aceti1 | | 16S rRNA | Acetobacter aceti |
| Asia2 | | 16S rRNA | Asaia |
| Acidocella1 | | 16S rRNA | Acidocella/Acidiphilium |
| Afipia2 | | 16S rRNA | Afipia |
| ACD840 | | 16S rRNA | Acidiphilium |
| Acdp821 | | 16S rRNA | Acidiphilium |
| Oxy1 | | 16S rRNA | Gluconobacter oxydans |
| Diaz4 | | 16S rRNA | Gluconacetobacter diazotrophicus |
| Gludi | | 16S rRNA | Gluconacetobacter diazotrophicus |
| Sac1 | | 16S rRNA | Gluconacetobacter sacchari |
| Ruber2 | | 16S rRNA | Pacraurococcus ruber |
| Glob2 | | 16S rRNA | Rhodopila globiformis |
| Bra1 | | 16S rRNA | Azospirillum brasilense et rel. cluster |
| Lipo1 | | 16S rRNA | Azospirillum lipoferum, A. doebereinerae and A. largomobile |
| Rub1 | | 16S rRNA | Rhodospirillum rubrum |
| Rub2 | | 16S rRNA | Rhodospirillum rubrum |
| Orienta3 | | 16S rRNA | Orientia |
| Orienta5 | | 16S rRNA | Orientia |
| Hypho3 | | 16S rRNA | Hyphomonas |
| Mari1 | | 16S rRNA | Maricaulis |
| Para1 | | 16S rRNA | Paracoccus |
| Undic2 | | 16S rRNA | Allorhizobium unidicola |
| Sphingo4 | | 16S rRNA | Most Sphingomonadaceae |
| Sub1 | | 16S rRNA | Sphingomonas subartica |
| Cap1 | | 16S rRNA | Sphingomonas capsulata |
| Caulo1A | | 16S rRNA | Some Caulobacteraceae |
| Caulo1B | | 16S rRNA | Most Caulobacteraceae |
| Caulo2 | | 16S rRNA | Caulobacteraceae |
| Caubact1 | | 16S rRNA | Caulobacter |
| Asti1 | | 16S rRNA | Asticcacaulis |
| Bre1 | | 16S rRNA | Brevundimonas |
| Rzbc1247 | | 16S rRNA | Rhizobiaceae, Brucellaceae, Bartonella, Phyllobacteriaceae, Blastochloris, Azospirillum irakense and A. amazonense |
| Rzbc820 | | 16S rRNA | Rhizobiaceae, Brucella and Bartonella |
| AgroAT41m | | 16S rRNA | Agrobacterium (Biovar 1 and A. rubi) |
| AgrRubi | | 16S rRNA | Agrobacterium rubi |
| Vit2 | | 16S rRNA | Agrobacterium vitis |
| C58-1007 | | 16S rRNA | Agrobacterium (G2, G6, G7, G8, G9) |
| AgrLarry | | 16S rRNA | Agrobacterium larrymoorei |
| AF310-1010 | | 16S rRNA | Agrobacterium larrymoorei |
| Rhizo1A | | 16S rRNA | Some Rhizobium |
| Rhizo1B | | 16S rRNA | Some Rhizobium |
| Gal | | 16S rRNA | Rhizobium galegae |
| Galli1 | | 16S rRNA | Rhizobium gallicum |
| Rhihain | | 16S rRNA | Rhizobium hainanensis |
| Sino2 | | 16S rRNA | Most Sinorhizobium |
| Xinji | | 16S rRNA | Sinorhizobium xinjiangensis |
| Kummero2 | | 16S rRNA | Sinorhizobium kummerowiae |
| Adh | | 16S rRNA | Ensifer adhaerens and few Sinorhizobium |
| Barto1 | | 16S rRNA | Most Bartonella |
| Bruce3B | | 16S rRNA | Ochrobactrum |
| Ochro2 | | 16S rRNA | Ochrobactrum |
| Ochro3 | | 16S rRNA | Ochrobactrum |
| Phyllobact | | 16S rRNA | Mesorhizobium/Rhizobium |
| Msrhuak | | 16S rRNA | Mesorhizobium huakuii |
| Methylocyst1 | | 16S rRNA | Most Methylocystaceae |
| Methy5 | | 16S rRNA | Methylocystis and Methylosinus |
| Methy7 | | 16S rRNA | Methylocystis and Methylosinus |
| Nitrobacte | | 16S rRNA | Bradyrhizobiaceae (mostly Nitrobacter) |
| Rhodopseud | | 16S rRNA | Rhodopseudomonas |
| Elk1 | | 16S rRNA | Bradyrhizobium elkanii cluster |
| Nitro1 | | 16S rRNA | Nitrobacter |
| Blastobact | | 16S rRNA | Blastobacter denitrificans |
| Hypho5 | | 16S rRNA | Some Hyphomicrobium |
| Blastochlo6 | | 16S rRNA | Blastochloris and Ochrobactrum |
| Pedo2 | | 16S rRNA | Pedomicrobium |
| Cau2 | | 16S rRNA | Azorhizobium caulinodans |
| Methylobact2 | | 16S rRNA | Methylobacterium |
| BET940 | | 16S rRNA | Betaproteobacteria (excepted Comamonadaceae, Nitrosomonadaceae and Methylophilaceae) |
| Beta2 | | 16S rRNA | Betaproteobacteria |
| Beta3 | | 16S rRNA | Betaproteobacteria |
| Burcep | | 16S rRNA | Some Burkholderia (B. cepacia, B. mallei, B. pseudomallei, B. vietnamiensis, B. thailandensis, B. pyrrocinia) and some Herbaspirillum |
| Bkhglum | | 16S rRNA | Burkholderia glumae |
| Bkhgram1 | | 16S rRNA | Burkholderia graminis |
| Bkhgram2 | | 16S rRNA | Burkholderia graminis |
| Bkhvand | | 16S rRNA | Burkholderia plantarii |
| Thau2 | | 16S rRNA | Thauera |
| Ni2 | | 16S rRNA | Nitrosomonas |
| Nitcom2b | | 16S rRNA | Nitrosomonas communis |
| Nitcryo1 | | 16S rRNA | Nitrosomonas cryotolerans |
| Nitcryo2 | | 16S rRNA | Nitrosomonas cryotolerans |
| Nithalo1 | | 16S rRNA | Nitrosomonas halophila |
| Nithalo2 | | 16S rRNA | Nitrosomonas halophila |
| Nitmar2 | | 16S rRNA | Nitrosomonas marina |
| Comtes2 | | 16S rRNA | Comamonas (mainly C. testosteroni) |
| RhizoLCSA1 | | 16S rRNA | Maize rhizosphere clones affiliated to Variovorax, Aquabacterium and Sphingomonas |
| Alca1b | | 16S rRNA | Alcaligenaceae |
| Eikcor1 | | 16S rRNA | Eikenella corrodens |
| Methphi5 | | 16S rRNA | Methylophilus cluster |
| Car1 | | 16S rRNA | Carsonella ruddii |
| ACT465a | | 16S rRNA | Acidithiobacillus |
| Thio2 | | 16S rRNA | Acidithiobacillus |
| Mor1 | | 16S rRNA | Moraxella |
| Psy1 | | 16S rRNA | Psychrobacter |
| marino | | 16S rRNA | Marinospirillum |
| Ocea1 | | 16S rRNA | Oceanospirillum |
| Ocea2 | | 16S rRNA | Oceanospirillum |
| Methy1A | | 16S rRNA | Some Methylomonas |
| Methy1B | | 16S rRNA | Some Methylomonas |
| Methmo6 | | 16S rRNA | Methylomonas cluster |
| Met1 | | 16S rRNA | Methylomicrobium |
| Methmi3 | | 16S rRNA | Methylomicrobium cluster |
| Ecoli1b | | 16S rRNA | Escherichia/Citrobacter/Salmonella/Shigella cluster |
| Bren2 | | 16S rRNA | Brenneria |
| Buch1 | | 16S rRNA | Buchnera aphidicola |
| Ewin1 | | 16S rRNA | Ewingella |
| Kleb1 | | 16S rRNA | Klebsiella oxytoca |
| Rah1 | | 16S rRNA | Rahnella |
| Ser1 | | 16S rRNA | Serratia |
| Yer1 | | 16S rRNA | Yersinia |
| Cardio1 | | 16S rRNA | Cardiobacterium |
| Cyclo5 | | 16S rRNA | Cycloclasticus |
| Fran | | 16S rRNA | Francisella |
| PseuAlc3 | | 16S rRNA | Pseudomonas alcaligenes |
| Pseu11 | | 16S rRNA | Pseudomonas putida complex and P. stutzeri complex |
| Pseu19 | | 16S rRNA | Pseudomonas putida complex |
| Pseu24 | | 16S rRNA | Pseudomonas putida copmlex |
| Pseu12 | | 16S rRNA | Pseudomonas stutzeri complex |
| Pseu15 | | 16S rRNA | Pseudomonas stutzeri complex |
| PseuStu1 | | 16S rRNA | Pseudomonas stutzeri complex |
| Pseu33 | | 16S rRNA | Pseudomonas citronellolis and Pseudomonas nitroreducens |
| PseuTol | | 16S rRNA | Pseudomonas tolaasii |
| PseuSV5 | | 16S rRNA | Pseudomonas sp. SV5, Ant9 and IpA-93 |
| PseuBC4-6 | | 16S rRNA | Pseudomonas corrugata |
| PseuISO1-2 | | 16S rRNA | Pseudomonas sp. ISO1 |
| PseuSag1 | | 16S rRNA | Pseudomonas sp. Sag-1 and Iqa-1 |
| Pseu34 | | 16S rRNA | Pseudomonas fragi cluster and Pseudomonas FAIR cluster |
| Pseu35 | | 16S rRNA | Pseudomonas LAB-26 cluster |
| Pseu36 | | 16S rRNA | Pseudomonas LAB-26 cluster |
| NmV | | 16S rRNA | Nitrosococcus mobilis |
| Nitmob | | 16S rRNA | Nitrosococcus mobilis |
| Allo1 | | 16S rRNA | Allochromatium |
| Allo4 | | 16S rRNA | Allochromatium |
| Chrom1 | | 16S rRNA | Chromatium |
| Thio3H | | 16S rRNA | Thiocapsa |
| Thiocys2 | | 16S rRNA | Thiocystis |
| alter1 | | 16S rRNA | Alteromonas |
| alter2 | | 16S rRNA | Alteromonas |
| psalter1 | | 16S rRNA | Pseudoalteromonas |
| psalter2 | | 16S rRNA | Pseudoalteromonas |
| Xancam | | 16S rRNA | Xanthomonas campestris |
| Lysant | | 16S rRNA | Lysobacter antibioticus |
| Geo1A | | 16S rRNA | Some Geobacter |
| Geo1B | | 16S rRNA | Geobacter |
| DVLVT222f | | 16S rRNA | Desulfovibrio |
| DVGL228e | | 16S rRNA | Desulfovibrio |
| Ep1 | | 16S rRNA | Uncultured Epsilonproteobacteria affiliated to Nautiliaceae |
| Epsi1 | | 16S rRNA | Uncultured Epsilonproteobacteria affiliated to Sulfirimonas/Thiomicrospira |
| Epsi3 | | 16S rRNA | Uncultured Epsilonproteobacteria affiliated to Sulfirimonas/Thiomicrospira |
| Alvi2 | | 16S rRNA | Unidentified Epsilonproteobacteria affiliated to Alvinella |
| Alvi3 | | 16S rRNA | Unidentified Epsilonproteobacteria affiliated to Alvinella |
| Alvi4 | | 16S rRNA | Unidentified Epsilonproteobacteria affiliated to Alvinella |
| Alvi5 | | 16S rRNA | Unidentified Epsilonproteobacteria affiliated to Alvinella |
| Arco1 | | 16S rRNA | Arcobacter cibarius and uncultured Arcobacter |
| Arco2 | | 16S rRNA | Unidentified Epsilonproteobacteria affiliated to Arcobacter |
| Sulfu1 | | 16S rRNA | Sulfurospirillum |
| Sulfu3 | | 16S rRNA | Some Sulfurospirillum and uncultured Sulfurospirillum |
| Heli2 | | 16S rRNA | Some Helicobacter and Wolinella succinogenes |
| Heli4 | | 16S rRNA | Some Helicobacter |
| Heli5 | | 16S rRNA | Some Helicobacter |
| Heli6 | | 16S rRNA | Some Helicobacter |
| HeliFel1 | | 16S rRNA | Helicobacter heilmanni cluster (including H. felis) |
| HeliMur1 | | 16S rRNA | Helicobacter muridarum |
| HeliPull1 | | 16S rRNA | Some Helicobacter |
| HelPull3 | | 16S rRNA | Some Helicobacter |
| HeliPyl2 | | 16S rRNA | Helicobacter pylori |
| HeliPyl3 | | 16S rRNA | Helicobacter pylori |
| Wolin2 | | 16S rRNA | Wolinella succinogenes |
| Anab1 | | 16S rRNA | Anabaena |
| nostoc3 | | 16S rRNA | Nostoc |
| Calo1 | | 16S rRNA | Calothrix |
| Calo2 | | 16S rRNA | Calothrix |
| cylindro2 | | 16S rRNA | Cylindrospermopsis |
| cylindro3 | | 16S rRNA | Cylindrospermopsis |
| gloe2 | | 16S rRNA | Chlorogloeopsis |
| lyng2 | | 16S rRNA | Lyngbya |
| micys1 | | 16S rRNA | Microcystis |
| micys2 | | 16S rRNA | Microcystis |
| micys3 | | 16S rRNA | Microcystis |
| oscil1 | | 16S rRNA | Planktothrix |
| phor2 | | 16S rRNA | Phormidium |
| pleur1 | | 16S rRNA | Pleurocapsa |
| pleur2 | | 16S rRNA | Pleurocapsa |
| pleur3 | | 16S rRNA | Pleurocapsa |
| prochlo1 | | 16S rRNA | Prochlorothrix |
| prochlo2 | | 16S rRNA | Prochlorothrix |
| Systic2 | | 16S rRNA | Synechocystic |
| thia1 | | 16S rRNA | Thialhalivibrio |
| tricho2 | | 16S rRNA | Trichodesmium |
| tricho3 | | 16S rRNA | Trichodesmium |
| chlorob1 | | 16S rRNA | Chlorobium |
| Bacil16 | | 16S rRNA | Bacillus |
| Bacil60 | | 16S rRNA | Bacillus sphaericus |
| Bacsub2 | | 16S rRNA | Bacillus subtilis et rel. cluster |
| Bacmega1 | | 16S rRNA | Bacillus megaterium |
| BaCoa1 | | 16S rRNA | Bacillus coagulans cluster |
| Paeni4-2 | | 16S rRNA | Paenibacillus popolliae et rel. cluster (including P. lentimorbus, P. thyaminolyticus) |
| Paeni1-2 | | 16S rRNA | Paenibacillus naphthalenovorans |
| Paeni7-2 | | 16S rRNA | Paenibacillus azotofixans |
| Paeni7-3 | | 16S rRNA | Paenibacillus azotofixans |
| Paeni5-2 | | 16S rRNA | Paenibacillus polymyxa |
| Lacto1 | | 16S rRNA | Lactobacillus fermentum |
| Lacto10 | | 16S rRNA | Lactobacillus brevis |
| Lacto15 | | 16S rRNA | Lactobacillus |
| Lacto26 | | 16S rRNA | Lactobacillus plantarum |
| Lacto39 | | 16S rRNA | Lactobacillus |
| Lacto41 | | 16S rRNA | Lactobacillus acidophilus |
| Lacto42 | | 16S rRNA | Lactobacillus delbrueckii |
| Lacto60 | | 16S rRNA | Lactobacillus acidophilus |
| Lacto61 | | 16S rRNA | Lactobacillus plantarum |
| Lacto73 | | 16S rRNA | Lactobacillus casei |
| Lacto87 | | 16S rRNA | Lactobacillus alimentarius |
| Lacto90 | | 16S rRNA | Lactobacillus salivarius |
| Lacto108 | | 16S rRNA | Lactobacillus perolens |
| Lacto99 | | 16S rRNA | Lactobacillus perolens |
| Enter2 | | 16S rRNA | Enterococcus |
| Lactococcus4 | | 16S rRNA | Lactococcus |
| Strepto1 | | 16S rRNA | Streptococcus |
| Strepto10 | | 16S rRNA | Streptococcus |
| Strepto19 | | 16S rRNA | Streptococcus |
| Strepto27 | | 16S rRNA | Streptococcus |
| Tab993 | | 16S rRNA | Thermoanaerobacter |
| buty1 | | 16S rRNA | Butyrivibrio |
| Sele1 | | 16S rRNA | Selenomonas |
| Sele4 | | 16S rRNA | Selenomonas |
| Sele13 | | 16S rRNA | Selenomonas |
| Sporo2 | | 16S rRNA | Sporomusa |
| Acida2 | | 16S rRNA | Acidaminococcus |
| Acida4 | | 16S rRNA | Acidaminococcus |
| Diali3 | | 16S rRNA | Dialister |
| Diali5 | | 16S rRNA | Dialister |
| Diali14 | | 16S rRNA | Dialister |
| Mega2 | | 16S rRNA | Megasphaera |
| Mega4 | | 16S rRNA | Megasphaera |
| Mega8 | | 16S rRNA | Megasphaera |
| Mega11 | | 16S rRNA | Megasphaera |
| Phasco4 | | 16S rRNA | Phascolarctobacterium |
| Phasco8 | | 16S rRNA | Phascolarctobacterium |
| Eubac3 | | 16S rRNA | Eubacterium |
| Eubac4 | | 16S rRNA | Eubacterium |
| Mogi1 | | 16S rRNA | Mogibacterium |
| Mogi12 | | 16S rRNA | Mogibacterium |
| Myco11 | | 16S rRNA | Mycoplasma |
| Myco2 | | 16S rRNA | Mycoplasma |
| Myco43 | | 16S rRNA | Mycoplasma |
| Myco57 | | 16S rRNA | Mycoplasma |
| Myco81 | | 16S rRNA | Mycoplasma felis |
| Spiroplas2 | | 16S rRNA | Spiroplasma |
| Spiroplas4 | | 16S rRNA | Spiroplasma |
| Spiroplas15 | | 16S rRNA | Spiroplasma |
| Achol3 | | 16S rRNA | Acholeplasma |
| Plancto1 | | 16S rRNA | Rhodopirrellula cluster |
| Plancto16 | | 16S rRNA | Some Pirrellula |
| Plancto17 | | 16S rRNA | Some Pirrellula |
| Plancto10 | | 16S rRNA | Some Pirrellula |
| Plancto13 | | 16S rRNA | Uncultured anoxic bacteria affiliated to candidatus Kuenenia |
| Plancto14 | | 16S rRNA | Uncultured anoxic bacteria affiliated to candidatus Kuenenia |
| Plancto15 | | 16S rRNA | Uncultured anoxic bacteria affiliated to candidatus Kuenenia |
| Plancto9 | | 16S rRNA | Gemmata cluster |
| Plancto12 | | 16S rRNA | Gemmata cluster |
| Verru4 | | 16S rRNA | Some Verrucomicrobia affiliated to Prosthecobacter |
| Prevo3 | | 16S rRNA | Prevotella |
| Bacte7 | | 16S rRNA | Bacteroides |
| Rik6 | | 16S rRNA | Rikenella |
| Porp15 | | 16S rRNA | Porphyromonas |
| Dysg3 | | 16S rRNA | Dysgonomonas |
| Flavo2 | | 16S rRNA | Flavobacterium columnare |
| Berg3 | | 16S rRNA | Bergeyella |
| Ornit3 | | 16S rRNA | Ornithobacterium |
| Ornit7 | | 16S rRNA | Ornithobacterium |
| Psyf15 | | 16S rRNA | Psychroflexus |
| Psys2 | | 16S rRNA | Psychroserpens |
| Chrys2 | | 16S rRNA | Chryseobacterium |
| Blatta1 | | 16S rRNA | Blattabacterium |
| Blatta2 | | 16S rRNA | Blattabacterium |
| Sapro1 | | 16S rRNA | Saprospiraceae |
| Sapro2 | | 16S rRNA | Saprospiraceae |
| Cyclo1 | | 16S rRNA | Cyclobacterium |
| Hyme3 | | 16S rRNA | Hymenobacter |
| Hyme16 | | 16S rRNA | Hymenobacter |
| Micro2 | | 16S rRNA | Microscilla |
| Micro14 | | 16S rRNA | Microscilla |
| Run4 | | 16S rRNA | Runella |
| Spiro5 | | 16S rRNA | Spirosoma |
| Spiro7 | | 16S rRNA | Spirosoma |
| Spiro10 | | 16S rRNA | Spirosoma |
| Rhodo3 | | 16S rRNA | Rhodothermus |
| MPA60 | | 16S rRNA | Microthrix parvicella |
| Actino4 | | 16S rRNA | Rubrobacter |
| Arthro-clustB3 | | 16S rRNA | Arthrobacter |
| StreptomycesA6 | | 16S rRNA | Streptomyces |
| StreptomycesB3 | | 16S rRNA | Streptomyces |
| StreptomycesC7 | | 16S rRNA | Streptomyces |
| StreptomycesC17 | | 16S rRNA | Streptomyces |
| StreptomycesD7 | | 16S rRNA | Streptomyces |
| Corybo1 | | 16S rRNA | Corynebacterium bovis |
| Corybo2 | | 16S rRNA | Corynebacterium bovis |
| Coryglu1 | | 16S rRNA | Corynebacterium glutamicum cluster |
| Coryjei1 | | 16S rRNA | Corynebacterium jeikeium cluster |
| CoryVar1 | | 16S rRNA | Corynebacterium variabilis |
| Coryxer1 | | 16S rRNA | Corynebacterium xerosis |
| Coryxer2 | | 16S rRNA | Corynebacterium xerosis |
| Noc1 | | 16S rRNA | Nocardia cluster |
| Noc2 | | 16S rRNA | Nocardia cluster |
| NocAfri1 | | 16S rRNA | Nocardia africana |
| NocBra1 | | 16S rRNA | Nocardia pseudobrasiliensis cluster |
| NocBra2 | | 16S rRNA | Nocardia pseudobrasiliensis cluster |
| Agroco5 | | 16S rRNA | Agrococcus |
| Agro-clustA3 | | 16S rRNA | Agromyces |
| CurtoA1 | | 16S rRNA | Curtobacterium |
| Frigori2 | | 16S rRNA | Frigoribacterium |
| MicrobacA1 | | 16S rRNA | Microbacterium |
| MicrobacB4 | | 16S rRNA | Microbacterium |
| NocardioA5 | | 16S rRNA | Nocardioides |
| NocardioB2 | | 16S rRNA | Nocardioides |
| Propio1 | | 16S rRNA | Propionibacterium |
| ActiA4 | | 16S rRNA | Actinomyces |
| ActiB4 | | 16S rRNA | Actinomyces |
| ActiC4 | | 16S rRNA | Actinomyces |
| ActiC5 | | 16S rRNA | Actinomyces |
| ActiD2 | | 16S rRNA | Actinomyces |
| Actiba1 | | 16S rRNA | Actinobaculum |
| Actiba3 | | 16S rRNA | Actinobaculum |
| Actino1 | | 16S rRNA | Streptosporangineae |
| Thermobifida1 | | 16S rRNA | Thermobifida |
| Nocardio1 | | 16S rRNA | Some Nocardiopsis and some Streptomonospora |
| Nocardio3 | | 16S rRNA | Some Nocardiopsis, some Streptomonospora and some Prauseria |
| ThermonoA18 | | 16S rRNA | Thermomonospora |
| ThermonoA8 | | 16S rRNA | Thermomonospora |
| ThermonoB1 | | 16S rRNA | Thermomonospora |
| ThermonoB3 | | 16S rRNA | Thermomonospora |
| Spha5 | | 16S rRNA | Sphaerobacter |
| Denitro6 | | 16S rRNA | Denitrobacterium |
| Collin29 | | 16S rRNA | Collinsella |
| Collin43 | | 16S rRNA | Collinsella |
| Got625 | | 16S rRNA | Geotoga |
| Pet454 | | 16S rRNA | Petrotoga |
| AcidUnc | | 16S rRNA | Uncultured Acidobacteria (Acidobacteria_6 cluster) |
| AcidoUnc3 | | 16S rRNA | Uncultured Acidobacteria (Acidobacteria_4 cluster) |
| GeoHolo2 | | 16S rRNA | Geothrix and Holophaga (Acidobacteria_8 cluster) |
| RhizoLCSA2 | | 16S rRNA | Maize rhizosphere clones affiliated to Acidobacteria (Acidobacteria_7 cluster) |
| RhizoLCSA3 | | 16S rRNA | Maize rhizosphere clones affiliated to Acidobacteria (Acidobacteria_7 cluster) |
| RhizoLCSA4 | | 16S rRNA | Maize rhizosphere clones affiliated to Acidobacteria (Acidobacteria_7 cluster) |
| RhizoLCSA6 | | 16S rRNA | Maize rhizosphere clones affiliated to Acidobacteria (Acidobacteria_6 cluster) |
| Chlam | | 16S rRNA | Chlamydiaceae |
| OP11-2 | | 16S rRNA | Uncultured eubacteria WCHB1 (OP11 division) |
| OP11-3 | | 16S rRNA | Uncultured eubacteria (OP11 division) |
| OP11-4 | | 16S rRNA | Uncultured eubacteria (OP11 division) |
| OP11-5 | | 16S rRNA | Uncultured eubacteria WCHB1 (OP11 division) |
| GeoVib1 | | 16S rRNA | Geovibrio and Denitrovibrio |
| Flex3 | | 16S rRNA | Mucispirillum |
| Flex5 | | 16S rRNA | Mucispirillum |
| Flex6 | | 16S rRNA | Mucispirillum |
| OP2_1 | | 16S rRNA | Candidate phylum OP2 |
| Chloroplast | | 16S rRNA | Chloroplasts |
| Muco | | 16S rRNA | Mucorales |
| ActORD1 | | 16S rRNA | Actinomycetales |
| KocTr4 | | 16S rRNA | Kocuria |
| Nestk3 | | 16S rRNA | Nesterenkonia |
| Sporich8 | | 16S rRNA | Sporichthya |
| Modb2 | | 16S rRNA | Modestobacter |
| Msph1 | | 16S rRNA | Nakamurella (previously Microsphaera) |
| Strmyc13 | | 16S rRNA | Streptomyces |
| Strmyc15 | | 16S rRNA | Streptomyces |
| Strmyc16 | | 16S rRNA | Streptomyces |
| Strmyc27 | | 16S rRNA | Streptomyces |
| Strmyc28 | | 16S rRNA | Streptomyces |
| Strmyc31 | | 16S rRNA | Streptomyces |
| StspSUB1 | | 16S rRNA | Streptosporanginae |
| StspSUB3 | | 16S rRNA | Streptosporanginae |
| CornbaSUB1 | | 16S rRNA | Corynebacterineae |
| Wilm1 | | 16S rRNA | Williamsia |
| Tsuka1 | | 16S rRNA | Tsukamurella |
| Tsuka2 | | 16S rRNA | Tsukamurella |
| Rhococ3 | | 16S rRNA | Rhodococcus |
| Mycoba1 | | 16S rRNA | Mycobacterium |
| Mycoba2 | | 16S rRNA | Mycobacterium |
| Mycoba3 | | 16S rRNA | Mycobacterium |
| Mycoba4 | | 16S rRNA | Mycobacterium |
| Nocrd6 | | 16S rRNA | Nocardia |
| Nocrd8 | | 16S rRNA | Nocardia |
| Sacchms5 | | 16S rRNA | Saccharomonospora |
| Sacchms7 | | 16S rRNA | Saccharomonospora |
| Sacchms8 | | 16S rRNA | Saccharomonospora/Saccharopolyspora |
| Sacchms9 | | 16S rRNA | Saccharomonospora/Saccharopolyspora |
| Sacchps8 | | 16S rRNA | Saccharopolyspora |
| Thebs2 | | 16S rRNA | Thermobispora |
| Thebs4 | | 16S rRNA | Thermobispora |
| Thercr1 | | 16S rRNA | Thermocrispum |
| Thercr2 | | 16S rRNA | Thermocrispum |
| Saccht8 | | 16S rRNA | Saccarothrix |
| Saccht9 | | 16S rRNA | Saccarothrix |
| Leifs5 | | 16S rRNA | Microbacteriaceae |
| Leifs6 | | 16S rRNA | Microbacteriaceae |
| Leifs2 | | 16S rRNA | Leifsonia |
| Agroc1 | | 16S rRNA | Agrococcus |
| Agroc4 | | 16S rRNA | Agrococcus |
| Subte1 | | 16S rRNA | Subtercola, Agreia |
| Micba10 | | 16S rRNA | Microbacterium |
| Micba14 | | 16S rRNA | Microbacterium |
| Micba4 | | 16S rRNA | Microbacterium |
| Micba5 | | 16S rRNA | Microbacterium |
| Clavb3 | | 16S rRNA | Clavibacter |
| Cryob11 | | 16S rRNA | Cryobacterium |
| Cryob12 | | 16S rRNA | Cryobacterium |
| Cryob13 | | 16S rRNA | Cryobacterium |
| Cryob3 | | 16S rRNA | Cryobacterium |
| Cryob5 | | 16S rRNA | Cryobacterium |
| Curtb1 | | 16S rRNA | Curtobacterium |
| Curtb3 | | 16S rRNA | Curtobacterium |
| Jons4 | | 16S rRNA | Jonesia |
| Aplan6 | | 16S rRNA | Actinoplanes |
| Asan1 | | 16S rRNA | Asanoa |
| Asan3 | | 16S rRNA | Asanoa |
| Cate1 | | 16S rRNA | Catenuloplanes |
| Dacty2 | | 16S rRNA | Dactylosporangium |
| Dacty3 | | 16S rRNA | Dactylosporangium |
| Solw3 | | 16S rRNA | Solwaraspora |
| Nocadio1 | | 16S rRNA | Nocardioides |
| Nocadio14 | | 16S rRNA | Nocardioides |
| Nocadio16 | | 16S rRNA | Nocardioides |
| Nocadio18 | | 16S rRNA | Nocardioides |
| Nocadio3 | | 16S rRNA | Nocardioides |
| Nocadio8 | | 16S rRNA | Nocardioides |
| Krib1 | | 16S rRNA | Kribella |
| Hong2 | | 16S rRNA | Hongia |
| Amytop5 | | 16S rRNA | Amycolatopsis |
| Amytop6 | | 16S rRNA | Amycolatopsis |
| Prausl2 | | 16S rRNA | Prauserella |
| Pseno4 | | 16S rRNA | Pseudonocardia |
| Pseno5 | | 16S rRNA | Pseudonocardia |
| Propb3 | | 16S rRNA | Propionibacterium |
| Propb7 | | 16S rRNA | Propionibacterium |
| Propb8 | | 16S rRNA | Propionibacterium |
| Miclun1 | | 16S rRNA | Microlunatus |
| Tess3 | | 16S rRNA | Tessaracoccus |
| Mob3 | | 16S rRNA | Mobiluncus |
| Mob4 | | 16S rRNA | Mobiluncus |
| Mibisp1 | | 16S rRNA | Microbispora |
| Mibisp2 | | 16S rRNA | Microbispora |
| Mitesp1 | | 16S rRNA | Microtetraspora |
| Mitesp2 | | 16S rRNA | Microtetraspora |
| Tetsp2 | | 16S rRNA | Tetrasphaera |
| Acm3 | | 16S rRNA | Actinomadura |
| Acm6 | | 16S rRNA | Actinomadura |
| Nocps3 | | 16S rRNA | Nocardiopsis |
| DermbFAM1 | | 16S rRNA | Dermabacteraceae |
| DermbFAM2 | | 16S rRNA | Dermabacteraceae |
| Bracb2 | | 16S rRNA | Brachybacterium |
| Dermb1 | | 16S rRNA | Dermabacter |
| Brev3 | | 16S rRNA | Brevibacterium |
| Brev4 | | 16S rRNA | Brevibacterium |
| Brev5 | | 16S rRNA | Brevibacterium |
| Brevi2 | | 16S rRNA | Brevibacterium |
| Brevi3 | | 16S rRNA | Brevibacterium |
| Roth1 | | 16S rRNA | Rothia |
| Roth2 | | 16S rRNA | Rothia |
| Celm4 | | 16S rRNA | Cellulomonas |
| Celm5 | | 16S rRNA | Cellulomonas |
| Celum1 | | 16S rRNA | Cellulosimicrobium |
| Prom2 | | 16S rRNA | Promicromonospora |
| Crysp2 | | 16S rRNA | Cryptosporangium |
| Glyc3 | | 16S rRNA | Glycomyces |
| Glyc4 | | 16S rRNA | Glycomyces |
| Gord2 | | 16S rRNA | Gordonia |
| Gord3 | | 16S rRNA | Gordonia |
| Gord6 | | 16S rRNA | Gordonia |
| Gord7 | | 16S rRNA | Gordonia |
| Aci1 | | 16S rRNA | Acidiphillium |
| Aci2 | | 16S rRNA | Acidiphillium/Acidocella |
| Liq1 | | 16S rRNA | Gluconacetobacter liquefaciens |
| Inteur1 | | 16S rRNA | Gluconacetobacter intermedius and Gluconacetobacter europaeus |
| Azo1 | | 16S rRNA | Azospirillum (excepted A. irakense and A. amazonense), some Roseomonas spp., some Rhodospirillum spp., some Rhodocista spp., some Skermanella spp. |
| Azo5 | | 16S rRNA | Azospirillum (excepted A. irakense and A. amazonense), some Roseomonas spp., some Rhodospirillum spp., some Rhodocista spp., some Skermanella spp. |
| Ira1 | | 16S rRNA | Azospirillum irakense and Rhodocista sp. AR2107 and AT2107 |
| Ira3 | | 16S rRNA | Azospirillum irakense |
| Ama2 | | 16S rRNA | Azospirillum amazonense |
| Rhodo2 | | 16S rRNA | Rhodospirillum |
| Pha | | 16S rRNA | Phaeospirillum |
| Rho1 | | 16S rRNA | Rhodocista |
| Rho2 | | 16S rRNA | Rhodocista |
| Wol3 | | 16S rRNA | Wolbachia |
| Wol4 | | 16S rRNA | Wolbachia |
| Ehrli1 | | 16S rRNA | Ehrlichiaceae (excepted Ehrlichia risticii and Cowdria) |
| Cow1 | | 16S rRNA | Cowdria |
| Holo1 | | 16S rRNA | Holospora |
| Caedi1 | | 16S rRNA | Caedibacter |
| Rhodobact1B | | 16S rRNA | Rhodobacteraceae (excepted Paracoccus, Amaricoccus, Rhodobacter and Rhodovulum) |
| Rhodovo1A | | 16S rRNA | Rhodovolum |
| Sphingo5A | | 16S rRNA | Most Sphingomonadaceae |
| Sphingo5B | | 16S rRNA | Most Sphingomonadaceae |
| Rhi | | 16S rRNA | Rhizobiaceae (excepted Agrobacterium) |
| Rhizo157 | | 16S rRNA | Rhizobiaceae (excepted Agrobacterium), Bradyrhizobiaceae, Brucellaceae and Brevundimonas |
| Agro157 | | 16S rRNA | Agrobacterium (Biovar 1, 2 and 3) |
| B6-128 | | 16S rRNA | Agrobacterium (Genomic species G2, G3, G4, G7 and G9) |
| C58-128 | | 16S rRNA | Agrobacterium (G6, G8 and some A. rubi) |
| TT111-128 | | 16S rRNA | Agrobacterium (G1) |
| AF310-128 | | 16S rRNA | Agrobacterium larrymoorei, some Sulfitobacter, and some Roseobacter |
| Arub128 | | 16S rRNA | Some Agrobacterium rubi |
| Avit128 | | 16S rRNA | Agrobacterium vitis |
| B6-437 | | 16S rRNA | Agrobacterium (G1, G3, G4, G7, some A. rubi and most Rhizobium) |
| B6-603 | | 16S rRNA | Agrobacterium (G1, G3, G4, G7), A. rubi, A. larrymoorei, some Rhizobium and some Brevundimonas |
| C58-604 | | 16S rRNA | Agrobacterium (G2, G6, G8, G9, A. vitis and Rhodococcus) |
| Rhizo1-2 | | 16S rRNA | Most Rhizobium |
| Rgal128 | | 16S rRNA | Rhizobium galegae |
| Rgal157 | | 16S rRNA | Some Rhizobium, Mesorhizobium, Phyllobacterium, Methylobacterium, Acetobacter, Gluconacetobacter, Rhodospirillacae |
| Barto2 | | 16S rRNA | Bartonella |
| Amino1 | | 16S rRNA | Aminobacter |
| Meso1 | | 16S rRNA | Mesorhizobium |
| Brady4 | | 16S rRNA | Bradyrhizobiaceae |
| Brady6A | | 16S rRNA | Most Bradyrhizobium and Afipia |
| Brady6B | | 16S rRNA | Bradyrhizobium elkanii cluster |
| Hypho1 | | 16S rRNA | Some Hyphomicrobium |
| Hypho2 | | 16S rRNA | Some Hyphomicrobium |
| Ancy1 | | 16S rRNA | Ancylobacter |
| Blast1 | | 16S rRNA | Blastochloris |
| Xan | | 16S rRNA | Xanthobacter |
| Methylo1 | | 16S rRNA | Methylobacterium |
| Burkho4A | | 16S rRNA | Most Burkholderia |
| Burkho4B | | 16S rRNA | Some Burkholderia (B. hospita, B. cepacia, B. caribensis, B. caryophylli, B. mallei, B. pseudomallei, B. pyrrocinia, B. ambifaria, B. gladioli, B. glumae) |
| Burkho4C | | 16S rRNA | Some Burkholderia (B. glathei, B. andropogonis, B. cepacia, B. multivorans) |
| Mallei2 | | 16S rRNA | Burkholderia pseudomallei and B. thailandensis |
| Mallei3 | | 16S rRNA | Burkholderia pseudomallei and B. mallei |
| Dechlo2 | | 16S rRNA | Dechloromonas |
| Arcus1 | | 16S rRNA | Azoarcus |
| Arcus2 | | 16S rRNA | Azoarcus |
| Nit1A | | 16S rRNA | Most Nitrosospira |
| Nit1B | | 16S rRNA | Most Nitrosospira |
| Nit1C | | 16S rRNA | Some Nitrosospira |
| Herb1 | | 16S rRNA | Herbaspirillum |
| Oxa2 | | 16S rRNA | Oxalobacter formigenes |
| Var1 | | 16S rRNA | Variovorax |
| Pic1 | | 16S rRNA | Ralstonia pickettii |
| Achro1 | | 16S rRNA | Achromatium |
| Pho1 | | 16S rRNA | Photorhabdus |
| Pro1A | | 16S rRNA | Proteus |
| Pro1B | | 16S rRNA | Proteus |
| Verru3 | | 16S rRNA | Most Verrucomicrobia |
| Actino3 | | 16S rRNA | Frankia |
| Fibrobacter | | 16S rRNA | Fibrobacteres |
| Acido-a | | 16S rRNA | Uncultured Acidobacteria (Acidobacteria_6 cluster) |
| Acido-c | | 16S rRNA | Uncultured Acidobacteria (Acidobacteria_4 cluster) |
| Plasmo | | 16S rRNA | Plasmodium |
| Brevar | | 16S rRNA | Brevundimonas variabilis |
| Abri | | 16S rRNA | Sinorhizobium abri |
| Msrtian1 | | 16S rRNA | Mesorhizobium tianhanense |
| Bkhubo1 | | 16S rRNA | Burkholderia ubonensis |
| Bkhcari1 | | 16S rRNA | Some Burkholderia (B. caribensis and B. hospita) |
| Bkhcari2 | | 16S rRNA | Some Burkholderia (B. caribensis and B. hospita) |
| Bkhcary | | 16S rRNA | Burkholderia caryophylli |
| Bkhglat | | 16S rRNA | Burkholderia glathei |
| Varpar | | 16S rRNA | Variovorax paradoxus |
| Alca2 | | 16S rRNA | Alcaligenaceae |
| Ral2 | | 16S rRNA | Ralstonia |
| Raltaiw1 | | 16S rRNA | Ralstonia taiwanensis |
| Neiss1 | | 16S rRNA | Neisseriales |
| Neiselon | | 16S rRNA | Neisseria elongata |
| Eikcor2 | | 16S rRNA | Eikenella corrodens and Neisseria meningitidis |
| TF539 | | 16S rRNA | Acidithiobacillus ferroxidans |
| Pant1 | | 16S rRNA | Pantoea |
| Psdhalo2 | | 16S rRNA | Pseudomonas halodenitrificans |
| Psdresi1 | | 16S rRNA | Pseudomonas resinovorans |
| Psdtaet2 | | 16S rRNA | Pseudomonas taetrolens |
| Psdviri1 | | 16S rRNA | Pseudomonas viridiflava |
| Nitocea2 | | 16S rRNA | Nitrosococcus oceanus |
| Xantho2 | | 16S rRNA | Xanthomonas |
| Polycell | | 16S rRNA | Polyangium cellulosum |
| Campy | | 16S rRNA | Campylobacter |
| Bacil1 | | 16S rRNA | Bacillus |
| Paeazo | | 16S rRNA | Paenibacillus azotofixans |
| Clost | | 16S rRNA | Clostridium |
| Fuso1 | | 16S rRNA | Fusobacteriales |
| Pseu1 | | 16S rRNA | Pseudomonas |
| PseuBC2-10 | | 16S rRNA | Pseudomonas clusters C3, C4, C5 |
| PseuBC2BC3 | | 16S rRNA | Pseudomonas clusters C3, C4, C5 |
| PseuBC2BC3-2 | | 16S rRNA | Pseudomonas clusters C3, C4, C5 |
| Pseu4 | | 16S rRNA | Pseudomonas cluster C1 |
| Pseu5 | | 16S rRNA | Pseudomonas cluster C1 |
| Pseu6 | | 16S rRNA | Pseudomonas cluster C1 |
| Pseu7 | | 16S rRNA | Pseudomonas cluster C1 |
| Pseu8 | | 16S rRNA | Pseudomonas putida complex and P. stutzeri complex |
| Pseu22 | | 16S rRNA | Pseudomonas clusters C3, C4, C5 |
| Pseu28 | | 16S rRNA | Pseudomonas cluster C4 |
| Kluy3 | | 16S rRNA | Kluyveromyces |
| Kluy5 | | 16S rRNA | Kluyveromyces |
| Azira1 | | 16S rRNA | Azospirillum irakense cluster |
| Azama4 | | 16S rRNA | Azospirillum amazonense cluster |
| Azama7 | | 16S rRNA | Azospirillum amazonense cluster |
| Azama8 | | 16S rRNA | Azospirillum amazonense cluster |
| Azobr1 | | 16S rRNA | Some Azospirillum (A. brasilense and A. lipoferum) and Roseomonas faurieae |
| Azoli1 | | 16S rRNA | Azospirillum lipoferum cluster and Azospirillum brasilense et rel. cluster |
| Azolibr1 | | 16S rRNA | Azospirillum lipoferum cluster and Azospirillum brasilense et rel. cluster |
| Rhira1 | | 16S rRNA | Rhizobium radiobacter cluster (including Agrobacterium tumefaciens) |
| Rhira2 | | 16S rRNA | Rhizobium radiobacter cluster (including Agrobacterium tumefaciens) |
| Rhira3 | | 16S rRNA | Rhizobium radiobacter cluster (including Agrobacterium tumefaciens) |
| Rhira7 | | 16S rRNA | Rhizobium radiobacter cluster (including Agrobacterium tumefaciens) |
| Rhizo3 | | 16S rRNA | Rhizobium |
| Rhizo4 | | 16S rRNA | Rhizobium |
| Sino1 | | 16S rRNA | Sinorhizobium meliloti, S. saheli, S. terrangeae, S. kummerowiae |
| Ochro | | 16S rRNA | Some Ochrobactrum |
| Beij2 | | 16S rRNA | Beijerinckia |
| Bkmuvian | | 16S rRNA | Some Burkholderia (some B. cepacia, B. multivorans, and B. vietnamiensis) |
| Bktrop1 | | 16S rRNA | Burkholderia tropica |
| Bktrop2 | | 16S rRNA | Burkholderia tropica |
| Bktrop3 | | 16S rRNA | Burkholderia tropica |
| Bktrop4 | | 16S rRNA | Burkholderia tropica |
| Bkand | | 16S rRNA | Burkholderia andropogonis |
| Hefri2 | | 16S rRNA | Herbaspirilum seropedicae |
| Hefri3 | | 16S rRNA | Herbaspirilum huttiense, Herbaspirillum putei, Herbaspirillum magnetovibrio |
| Hefri4 | | 16S rRNA | Herbaspirilum huttiense, Herbaspirillum putei, Herbaspirillum magnetovibrio |
| Heser1 | | 16S rRNA | Harbaspirillum seropedicae |
| Heser3 | | 16S rRNA | Harbaspirillum seropedicae |
| Janaga2 | | 16S rRNA | Janthinobacterium agaricidamnosum |
| Janaga3 | | 16S rRNA | Janthinobacterium agaricidamnosum |
| Jant1 | | 16S rRNA | Janthinobacterium |
| Acave1 | | 16S rRNA | Acidovorax aveneae cluster |
| Acave3 | | 16S rRNA | Acidovorax aveneae cluster |
| Acave4 | | 16S rRNA | Acidovorax aveneae cluster |
| Conide2 | | 16S rRNA | Comamonas nitrativorans-denitrifans cluster |
| Delac2 | | 16S rRNA | Delftia acidovorans |
| Delac3 | | 16S rRNA | Delftia acidovorans |
| Delf1 | | 16S rRNA | Delftia cluster |
| HyMa2 | | 16S rRNA | Hydrogenophaga-Macromonas cluster |
| Hypal1 | | 16S rRNA | Hydrogenophaga palleronii |
| Hypal2 | | 16S rRNA | Hydrogenophaga palleronii |
| Aldef5 | | 16S rRNA | Alcaligenes defragans |
| Alfae1 | | 16S rRNA | Alcaligenes faecalis cluster |
| Alfae2 | | 16S rRNA | Alcaligenes faecalis cluster |
| Alfae5 | | 16S rRNA | Alcaligenes faecalis cluster |
| Alfae7 | | 16S rRNA | Alcaligenes faecalis cluster |
| Achrom2 | | 16S rRNA | Achromobacter cluster |
| Achrom3 | | 16S rRNA | Achromobacter cluster |
| Achrom4 | | 16S rRNA | Achromobacter cluster |
| Rasol1 | | 16S rRNA | Ralstonia solanacearum |
| Chrom4 | | 16S rRNA | Chromobacterium cluster |
| Metphi1 | | 16S rRNA | Methylophilus cluster |
| Metphi2 | | 16S rRNA | Methylophilus cluster and uncultured Methylophylaceae cluster |
| Metphi3 | | 16S rRNA | Methylophilus cluster and uncultured Methylophylaceae cluster |
| MetMet1 | | 16S rRNA | Methylobacillus glycogenes, Methylobacillus praetensis and Methylomonas methylovora |
| Metvor2 | | 16S rRNA | Methylovorus mays, Methylovorus glycosetrophus and Methylobacillus |
| Metvor3 | | 16S rRNA | Methylovorus mays, Methylovorus glycosetrophus and Methylobacillus |
| Metmic1 | | 16S rRNA | Methylomicrobium cluster |
| Metmic2 | | 16S rRNA | Methylomicrobium cluster |
| Metmic5 | | 16S rRNA | Methylomicrobium cluster |
| Metmic6 | | 16S rRNA | Methylomicrobium cluster |
| Metmic7 | | 16S rRNA | Methylomicrobium cluster |
| Metmic8 | | 16S rRNA | Methylomicrobium cluster |
| Metmic9 | | 16S rRNA | Methylomicrobium agile and Methylomicrobium album |
| Metsar4 | | 16S rRNA | Methylosarcina cluster |
| Metsar5 | | 16S rRNA | Methylosarcina quisquillarum and Methylosarcina fibrata |
| Metsar7 | | 16S rRNA | Methylosarcina quisquillarum and Methylosarcina fibrata |
| enter5 | | 16S rRNA | Enterobacteriaceae |
| enter6 | | 16S rRNA | Escherichia/Citrobacter/Salmonella/Shigella cluster |
| enter3 | | 16S rRNA | Some Escherichia (E. coli and E. alberti) |
| enter4 | | 16S rRNA | Some Escherichia (E. coli and E. alberti) |
| Xenem1 | | 16S rRNA | Xenorhabdus nematophila |
| Xenem2 | | 16S rRNA | Xenorhabdus nematophila |
| Xenem3 | | 16S rRNA | Xenorhabdus nematophila |
| Xenem4 | | 16S rRNA | Xenorhabdus nematophila |
| Xenem5 | | 16S rRNA | Xenorhabdus nematophila |
| Xenem6 | | 16S rRNA | Xenorhabdus nematophila |
| Xenem7 | | 16S rRNA | Xenorhabdus nematophila |
| Xebe3 | | 16S rRNA | Xenorhabdus bedignii |
| Pagg5 | | 16S rRNA | Pantoea agglomerans |
| Pagg6 | | 16S rRNA | Pantoea agglomerans |
| Kgra3 | | 16S rRNA | Klebsiella granulomatis (within K. pneumoniae cluster) |
| Raqu2 | | 16S rRNA | Rahnella aquatilis |
| RaSef2 | | 16S rRNA | Rahnella and Serratia fonticula |
| RaSef4 | | 16S rRNA | Rahnella and Serratia fonticula |
| Serr1 | | 16S rRNA | Some Serratia |
| CitBut1 | | 16S rRNA | Citrobacter cluster and Buttiauxella |
| CitBut2 | | 16S rRNA | Citrobacter cluster and Buttiauxella |
| CitBut3 | | 16S rRNA | Citrobacter cluster and Buttiauxella |
| Eamy4 | | 16S rRNA | Erwinia amylovora cluster |
| Eamy5 | | 16S rRNA | Erwinia amylovora cluster |
| Eper1 | | 16S rRNA | Erwinia rhapontici and some Pantoea agglomerans |
| Ptol1 | | 16S rRNA | Pantoea toletana |
| Pechr10 | | 16S rRNA | Pectobacterium chrysanthemi |
| Pechr6 | | 16S rRNA | Pectobacterium chrysanthemi |
| Pechr8 | | 16S rRNA | Pectobacterium chrysanthemi |
| Sal1 | | 16S rRNA | Salmonella |
| Sapath3 | | 16S rRNA | Salmonella enterica subsp. enterica serovar Thompson and serovar paratyphi |
| Sapath4 | | 16S rRNA | Salmonella enterica subsp. enterica serovar Thompson and serovar paratyphi |
| Vibr1 | | 16S rRNA | Vibrionaceae |
| Franc1 | | 16S rRNA | Francisella cluster |
| FraWol1 | | 16S rRNA | Francisella cluster |
| Frphi1 | | 16S rRNA | Francisella philomiragia and F. piscidida |
| Frphi2 | | 16S rRNA | Francisella philomiragia and F. piscidida |
| Frtul3 | | 16S rRNA | Francisella tularensis |
| Frtul4 | | 16S rRNA | Francisella tularensis |
| Frtul7 | | 16S rRNA | Francisella tularensis |
| Psres | | 16S rRNA | Pseudomonas resinovorans cluster |
| Pscit1 | | 16S rRNA | Pseudomonas citronellolis |
| Psflav4 | | 16S rRNA | Pseudomonas flavescens |
| Pslut1 | | 16S rRNA | Pseudomonas luteola and Pseudomonas andersoni |
| Pslut2 | | 16S rRNA | Pseudomonas luteola and Pseudomonas andersoni |
| Psole1 | | 16S rRNA | Pseudomonas oleovorans cluster |
| Psole2 | | 16S rRNA | Pseudomonas oleovorans cluster |
| Azovi2 | | 16S rRNA | Azotobacter vinelandii |
| AzoAzo3 | | 16S rRNA | Azotobacter vinelandii and Azorhizophilus paspali |
| Azobei | | 16S rRNA | Azotobacter beijrenckii |
| Thio3 | | 16S rRNA | Thiobacillus denitrificans cluster |
| Thio4 | | 16S rRNA | Thiobacillus denitrificans cluster |
| Xant2 | | 16S rRNA | Xanthomonas |
| Xano3 | | 16S rRNA | Xanthomonas anoxopodis |
| Xano4 | | 16S rRNA | Xanthomonas anoxopodis |
| Sten12 | | 16S rRNA | Stenotrophomonas |
| Sten13 | | 16S rRNA | Stenotrophomonas |
| Sten14 | | 16S rRNA | Stenotrophomonas |
| Sten15 | | 16S rRNA | Stenotrophomonas |
| Sten4 | | 16S rRNA | Stenotrophomonas cluster |
| SteXan2 | | 16S rRNA | Xanthomonas and some Stenotrophomonas |
| SteXan3 | | 16S rRNA | Stenotrophomonas cluster and Xanthomonas sacchari cluster (including X. campestris, X. translucens, X. sacchari, X. hyacithi, X. albilineans, X. melonis) |
| Lyso2 | | 16S rRNA | Lysobacter cluster |
| Aesal1 | | 16S rRNA | Aeromonas salmonicida cluster |
| Aero2 | | 16S rRNA | Some Aeromonas |
| MyxCor1 | | 16S rRNA | Myxococcus/Corallococcus |
| MyxCor11 | | 16S rRNA | Myxococcus/Corallococcus |
| MyxCor12 | | 16S rRNA | Myxococcus/Corallococcus |
| MyxCor14 | | 16S rRNA | Some Myxococcus |
| MyxCor15 | | 16S rRNA | Some Myxococcus |
| MyxCor17 | | 16S rRNA | Some Myxococcus |
| MyxCor18 | | 16S rRNA | Some Myxococcus |
| MyxCor19 | | 16S rRNA | Some Myxococcus |
| MyxCor21 | | 16S rRNA | Some Myxococcus |
| MyxCor22 | | 16S rRNA | Some Myxococcus |
| Coralc4 | | 16S rRNA | Some Corallococcus |
| Coralc8 | | 16S rRNA | Some Corallococcus |
| Corallc10 | | 16S rRNA | Some Corallococcus |
| Corallc5 | | 16S rRNA | Some Corallococcus |
| Corallc6 | | 16S rRNA | Some Corallococcus |
| Corallc9 | | 16S rRNA | Some Corallococcus |
| Anmxb5 | | 16S rRNA | Anaeromyxobacter |
| Anmxb6 | | 16S rRNA | Anaeromyxobacter |
| StigMyx9 | | 16S rRNA | Stigmatella |
| Polyang10 | | 16S rRNA | Polyangium |
| Polyang2 | | 16S rRNA | Polyangium |
| Chond2 | | 16S rRNA | Chondromyces |
| Chond5 | | 16S rRNA | Chondromyces |
| Chond6 | | 16S rRNA | Chondromyces |
| Chond7 | | 16S rRNA | Chondromyces |
| un3Chon2 | | 16S rRNA | Uncultured Chondromyces |
| un3Chon3 | | 16S rRNA | Uncultured Chondromyces |
| un3Chon5 | | 16S rRNA | Uncultured Chondromyces |
| un43Chon10 | | 16S rRNA | Uncultured Chondromyces |
| un43Chon12 | | 16S rRNA | Uncultured Chondromyces |
| un43Chon13 | | 16S rRNA | Uncultured Chondromyces |
| un43Chon4 | | 16S rRNA | Uncultured Chondromyces |
| un43Chon7 | | 16S rRNA | Uncultured Chondromyces |
| un43Chon8 | | 16S rRNA | Uncultured Chondromyces |
| un43Chon9 | | 16S rRNA | Uncultured Chondromyces |
| un4Chon4 | | 16S rRNA | Uncultured Chondromyces |
| Halian2 | | 16S rRNA | Haliangium |
| Halian3 | | 16S rRNA | Haliangium |
| Halian5 | | 16S rRNA | Haliangium |
| Nancs1 | | 16S rRNA | Nannocystis |
| Nancs7 | | 16S rRNA | Nannocystis |
| Nancs8 | | 16S rRNA | Nannocystis |
| CystbSUB1 | | 16S rRNA | Cystobacterineae |
| CystbSUB2 | | 16S rRNA | Cystobacterineae |
| CystArch1 | | 16S rRNA | Cystobacter/Archangium |
| CystArch2 | | 16S rRNA | Cystobacter/Archangium |
| CystArch3 | | 16S rRNA | Cystobacter/Archangium |
| Cystb1 | | 16S rRNA | Cystobacter |
| Cystb3 | | 16S rRNA | Cystobacter |
| Cystb6 | | 16S rRNA | Cystobacter |
| Cystb8 | | 16S rRNA | Cystobacter |
| CystMel2 | | 16S rRNA | Cystobacter/Melittangium |
| CystMel3 | | 16S rRNA | Cystobacter/Melittangium |
| unCyst1 | | 16S rRNA | Unculcured Cystobacteriaceae |
| unCyst2 | | 16S rRNA | Unculcured Cystobacteriaceae |
| unCyst3 | | 16S rRNA | Unculcured Cystobacteriaceae |
| Bac25 | | 16S rRNA | Bacillus subtilis et rel. cluster |
| Bacsub12 | | 16S rRNA | Some Bacillus subtilis spp. |
| Bacsub7 | | 16S rRNA | Some spp. from Bacillus subtilis et rel. cluster |
| Bacsub9 | | 16S rRNA | Some spp. from Bacillus subtilis et rel. cluster |
| Bacaga2 | | 16S rRNA | Bacillus agaradherens |
| Bacaga3 | | 16S rRNA | Bacillus agaradherens |
| Bacazo3 | | 16S rRNA | Bacillus azotoformans |
| Bacbad2 | | 16S rRNA | Bacillus badius |
| Bacbae2 | | 16S rRNA | Bacillus baekryungensis |
| Bacbae3 | | 16S rRNA | Bacillus baekryungensis |
| Bacben1 | | 16S rRNA | Bacillus bengalicus |
| Baccer2 | | 16S rRNA | Bacillus cereus et rel. cluster |
| Baccer7 | | 16S rRNA | Bacillus cereus et rel. cluster |
| Bac10 | | 16S rRNA | Some Bacillus cereus and B. thuringiensis |
| Baccer8 | | 16S rRNA | Some Bacillus cereus and B. thuringiensis |
| Baccir1 | | 16S rRNA | Bacillus circulans |
| Baccir3 | | 16S rRNA | Bacillus circulans |
| Baccla5 | | 16S rRNA | Bacillus clausii and B. gibsonii |
| Baccoa1 | | 16S rRNA | Bacillus coagulans |
| Baccoh2 | | 16S rRNA | Bacillus cohnii |
| Baccoh3 | | 16S rRNA | Bacillus cohnii |
| Baccoh4 | | 16S rRNA | Bacillus cohnii |
| Bacfara1 | | 16S rRNA | Bacillus farraginis and Kurthia zopfii |
| Bacfara2 | | 16S rRNA | Bacillus fortis et rel. cluster |
| Bacfor1 | | 16S rRNA | Bacillus fortis et rel. cluster |
| Bacfir5 | | 16S rRNA | Bacillus firmus |
| Bacfle1 | | 16S rRNA | Bacillus flexus |
| Bacfun 3 | | 16S rRNA | Sporolactobacillus dextrus |
| Bacfun 6 | | 16S rRNA | Sporolactobacillus dextrus |
| Bachor1 | | 16S rRNA | Bacillus horikoshii |
| Bachrt1 | | 16S rRNA | Bacillus horti |
| Bacjeo2 | | 16S rRNA | Bacillus jeotgali |
| Bacjeo5 | | 16S rRNA | Bacillus jeotgali |
| Bacjeo6 | | 16S rRNA | Bacillus jeotgali |
| Backru5 | | 16S rRNA | Bacillus krulwichiae |
| Bacmac4 | | 16S rRNA | Bacillus macroides et rel. cluster |
| Bacmar1 | | 16S rRNA | Bacillus marsiflavi |
| Bacmet1 | | 16S rRNA | Bacillus methanolicus |
| Bacmet2 | | 16S rRNA | Bacillus methanolicus |
| Bacmyc1 | | 16S rRNA | Bacillus mycoides |
| Bacmyc3 | | 16S rRNA | Bacillus mycoides |
| Bacoler1 | | 16S rRNA | Bacillus oleronius |
| Bacpich2 | | 16S rRNA | Bacillus pichinotii |
| Bacpich3 | | 16S rRNA | Bacillus pichinotyi |
| Bacpsc 3 | | 16S rRNA | Bacillus pseudoalcaliphilus and Bacillus alcalophilus |
| Bacpsf1 | | 16S rRNA | Bacillus pseudofirmus |
| Bacpsf3 | | 16S rRNA | Bacillus pseudofirmus |
| Bacpum2 | | 16S rRNA | Bacillus pumillus |
| Bacsmi1 | | 16S rRNA | Bacillus smithii |
| Bacsmi4 | | 16S rRNA | Bacillus smithii |
| Bacsmi5 | | 16S rRNA | Bacillus smithii |
| Bacsprt1 | | 16S rRNA | Bacillus sporothermodurans and Bacillus oleronius |
| Bacsprt2 | | 16S rRNA | Bacillus sporothermodurans and Bacillus oleronius |
| Bacmis9 | | 16S rRNA | Bacillus vedderi |
| Bacved 3 | | 16S rRNA | Bacillus vedderi |
| Bacved 4 | | 16S rRNA | Bacillus vedderi |
| PeBr | | 16S rRNA | Paenibacillus and Brevibacillus |
| Paen5 | | 16S rRNA | Paenibacillus |
| Paen6 | | 16S rRNA | Paenibacillus |
| Ppop4 | | 16S rRNA | Paenibacillus popolliae et rel. cluster (including P. lentimorbus, P. thyaminolyticus) |
| Ppotu | | 16S rRNA | Paenibacillus popilliae et rel. and Peanibacillus turicensis |
| Pnaf1 | | 16S rRNA | Paenibacillus naphthalenovorans |
| Pazma1 | | 16S rRNA | Paenibacillus azotofixans and P. maquariensis |
| Pbo1maq | | 16S rRNA | Some Paenibacillus maquariensis spp. and uncultured Peanibacillus |
| Pbo1 | | 16S rRNA | Paenibacillus borealis |
| Pbo2 | | 16S rRNA | Paenibacillus borealis |
| Paeni7-1 | | 16S rRNA | Paenibacillus borealis |
| Palv | | 16S rRNA | Paenibacillus alvei |
| Palv2 | | 16S rRNA | Paenibacillus apiarius |
| Pamy3 | | 16S rRNA | Some Paenibacillus spp. from Paenibacillus amylolyticus et rel. cluster |
| Behi1 | | 16S rRNA | Bacillus ehimensis (within Paenibacillus koreensis cluster) |
| Bchikob2 | | 16S rRNA | Bacillus chinolyticus and Paenibacillus kobensis |
| Pchfabo1 | | 16S rRNA | Paenibacillus chibensis, Paenibacillus flavisporus, Paenibacillus borealis |
| Pchib2 | | 16S rRNA | Paenibacillus chibensis cluster |
| Pchinapi | | 16S rRNA | Paenibacillus chinjuensis and Paenibacillus apiarius |
| Pcukoho1 | | 16S rRNA | Paenibacillus curdlanolyticus and Paenibacillus kobensis |
| Pdae1 | | 16S rRNA | Paenibacillus daejeonensis et rel. cluster (including P. polymyxa) |
| Pdae2 | | 16S rRNA | Paenibacillus daejeonensis et rel. cluster (including P. polymyxa) |
| Phon1 | | 16S rRNA | Cohnella (Paenibacillus honkongensis) |
| Phon2 | | 16S rRNA | Cohnella (Paenibacillus honkongensis) |
| Pkor1 | | 16S rRNA | Paenibacillus koreensis |
| Pkor2 | | 16S rRNA | Paenibacillus koreensis |
| Pkol3 | | 16S rRNA | Paenibacillus koleovorans |
| Plac | | 16S rRNA | Paenibacillus lactis |
| Plar4 | | 16S rRNA | Paenibacillus larvae |
| Plen2 | | 16S rRNA | Paenibacilllus lentimorbus |
| Pnem1 | | 16S rRNA | Paenibacillus nematophilus |
| Pnem2 | | 16S rRNA | Paenibacillus nematophilus |
| Pnem3 | | 16S rRNA | Paenibacillus nematophilus |
| Pnem4 | | 16S rRNA | Paenibacillus nematophilus |
| Pnem6 | | 16S rRNA | Paenibacillus nematophilus |
| Pnem7 | | 16S rRNA | Paenibacillus nematophilus |
| Pval2 | | 16S rRNA | Paenibacillus validus |
| Pvalnaf | | 16S rRNA | Paenibacillus validus, Paenibacillus naphtalenovorans |
| Pvalnafchin2 | | 16S rRNA | Paenibacillus validus, Paenibacillus naphtalenovorans, Paenibacillus chinjuensis |
| Pvel4 | | 16S rRNA | Paenibacillus mucilaginosus |
| Pvelch1 | | 16S rRNA | Paenibacillus velasolus and Paenibacillus chinjuensis |
| Pvelch2 | | 16S rRNA | Paenibacillus velasolus and Paenibacillus chinjuensis |
| Pxya | | 16S rRNA | Paenibacillus xylanilyticus and P. illinoisensis |
| Palgi2 | | 16S rRNA | Paenibacillus alginoliticus |
| PalgiG1 | | 16S rRNA | Paenibacillus alginoliticus et rel. cluster |
| PalgiG3 | | 16S rRNA | Paenibacillus alginoliticus et rel. cluster |
| Brbac18 | | 16S rRNA | Brevibacillus borstelensis |
| Brbac2 | | 16S rRNA | Brevibacillus |
| Brbac3 | | 16S rRNA | Brevibacillus |
| Brbac4 | | 16S rRNA | Brevibacillus |
| Brbac5 | | 16S rRNA | Brevibacillus |
| Brbac6 | | 16S rRNA | Brevibacillus agri |
| Brbac8 | | 16S rRNA | Brevibacillus |
| ChryD1 | | 16S rRNA | Chryseobacterium gleum |
| ChryD2 | | 16S rRNA | Some Chryseobacterium |
| ChryD3 | | 16S rRNA | Some Chryseobacterium |
| ChryD4 | | 16S rRNA | Some Chryseobacterium |
| ChryD5 | | 16S rRNA | Some Chryseobacterium |
| ChryD6 | | 16S rRNA | Some Chryseobacterium |
| ChryD7 | | 16S rRNA | Some Chryseobacterium |
| Chrygl1 | | 16S rRNA | Chryseobacterium gleum |
| Chrygl3 | | 16S rRNA | Chryseobacterium gleum |
| Chryme1 | | 16S rRNA | Chryseobacterium meningosepticum cluster |
| ChrysR | | 16S rRNA | Chryseobacterium et rel. cluster |
| Artb1 | | 16S rRNA | Arthrobacter |
| Artb2 | | 16S rRNA | Arthrobacter |
| Artb3 | | 16S rRNA | Arthrobacter |
| Micco9 | | 16S rRNA | Micrococcus |
| Frank11 | | 16S rRNA | Frankia |
| Frank13 | | 16S rRNA | Frankia |
| Frank15 | | 16S rRNA | Frankia |
| Frank16 | | 16S rRNA | Frankia |
| Kisp5 | | 16S rRNA | Kitasatospora/Streptomyces |
| Kisp6 | | 16S rRNA | Kitasatospora/Streptomyces |
| Kisp7 | | 16S rRNA | Kitasatospora/Streptomyces |
| Kisp8 | | 16S rRNA | Kitasatospora/Streptomyces |
| Kisp9 | | 16S rRNA | Kitasatospora griseola |
| Stsp10 | | 16S rRNA | Streptosporangium |
| Stsp16 | | 16S rRNA | Streptosporangium |
| Stsp19 | | 16S rRNA | Streptosporangium |
| Cornba11 | | 16S rRNA | Corynebacterium |
| Cornba13 | | 16S rRNA | Corynebacterium |
| Cornba5 | | 16S rRNA | Corynebacterium |
| Cornba8 | | 16S rRNA | Corynebacterium |
| Dietz4 | | 16S rRNA | Dietzia |
| Dietz6 | | 16S rRNA | Dietzia |
| Dietz7 | | 16S rRNA | Dietzia |
| Dietz8 | | 16S rRNA | Dietzia |
| Sacchps10 | | 16S rRNA | Saccharopolyspora |
| Sacchps14 | | 16S rRNA | Saccharopolyspora |
| Agrm4 | | 16S rRNA | Agromyces |
| Agrm5 | | 16S rRNA | Agromyces |
| Agrm7 | | 16S rRNA | Agromyces |
| MicmFAM13 | | 16S rRNA | Micromonosporaceae |
| MicmFAM15 | | 16S rRNA | Micromonosporaceae |
| MicmFAM6 | | 16S rRNA | Micromonosporaceae |
| Micm3 | | 16S rRNA | Microlunatus |
| Nono1 | | 16S rRNA | Nonomuraea |
| Tetsp3 | | 16S rRNA | Tetrasphaera |
| Terrb1 | | 16S rRNA | Terrabacter/Janibacter |
| Terrb3 | | 16S rRNA | Terrabacter/Janibacter |
| Terrb5 | | 16S rRNA | Terrabacter/Janibacter |
| Terrb7 | | 16S rRNA | Terrabacter/Janibacter |
| Them15 | | 16S rRNA | Thermomonospora curvata |
| Them16 | | 16S rRNA | Thermomonospora |
| Them17 | | 16S rRNA | Thermomonospora |
| Thebi10 | | 16S rRNA | Thermobifida alba |
| Thebi7 | | 16S rRNA | Thermobifida fusca |
| Bifid5 | | 16S rRNA | Bifidobacterium/Aeriscardovia |
| OilvGAM1 | S-S-OicG1-0643 | 16S rRNA | Olavius ilvae and Olavius crassitunicatus Gamma 1 symbionts |
| Oalg/OilvGAM3 | S-G-OaiG3-0665-a-A-18 | 16S rRNA | Olavius algarvensis / Olavius ilvae Gamma 3 symbionts, some env. Clones |
| OalgDEL1 | S-S-OaD1-0136-a-A-18 | 16S rRNA | Olavius algarvensis Delta 1 symbiont |
| OilvDEL1 | S-S-OiD1-0136-a-A-18 | 16S rRNA | Olavius ilvae Delta 1 symbiont, unc. bacterium AY907763 |
| Oalg/OilvDEL3 | S-G-OaiD3-1449-a-A-18 | 16S rRNA | Olavius algarvensis/ Olavius ilvae Delta 3 symbiont |
| OalgDEL4 | S-S-OaD4-1427-a-A-18 | 16S rRNA | Olavius algarvensis Delta 4 symbiont |
| SPIRO | S-G-OISpi-0136-a-A-18 | 16S rRNA | spirochete symbiont group of gutless oligochaetes |
| CAOC | | 16S rRNA | Capnocytophaga ochracea |
| TMED | | 16S rRNA | Treponema medium |
| TLEC | | 16S rRNA | Treponema lecithinolyticum |
| TAMY | | 16S rRNA | Treponema amylovorum |
| XenoGam441 | | 16S rRNA | Xenoturbella bocki gammaproteobacterial endosymbiont and relatives |
| XenoGam666 | | 16S rRNA | Xenoturbella bocki gammaproteobacterial endosymbiont and relatives |
| XenoGam727 | | 16S rRNA | Xenoturbella bocki gammaproteobacterial endosymbiont and relatives |
| SymLl1251 | | 16S rRNA | L. lacteus symbiont |
| SymAf576 | | 16S rRNA | A. fragilis symbiont |
| SymAf1272 | | 16S rRNA | A. fragilis symbiont |
| Symco2 | | 16S rRNA | C. orbicularis symbiont |
| Rhodano 227 | S-*-Rno-0227-a-A-21 | 16S rRNA | Uncultured Rhodanobacter species closely related to Rhodanobacter thiooxydans |
| LEE82 | | 16S rRNA | Some members of the genus Leeuwenhoenkiella |
| DOK827 | | 16S rRNA | Some members of the genus Dokdonia |
| FL197 | | 16S rRNA | marine uncultured Flavobacteria clade VIS4 |
| VIS6-814 | | 16S rRNA | marine uncultured Flavobacteria clade VIS6 |
| VIS5-586 | | 16S rRNA | marine uncultured Flavobacteria clade VIS5 |
| FL845 | | 16S rRNA | marine uncultured Flavobacteria clade VIS2 |
| VIS3-183 | | 16S rRNA | marine uncultured Flavobacteria clade VIS3 |
| VIS1-575 | | 16S rRNA | marine uncultured Flavobacteria clade VIS1 |
| PSE227 | | 16S rRNA | Pseudomonas spp. |
| PSE1284 | | 16S rRNA | Pseudomonas spp. |
| TOL1028 | S-S-TOL-1028-a-A-18 | 16S rRNA | Strain TOL (from oleate enrichment) |
| TSP436 | S-*-0436-a-A-18 | 16S rRNA | Clones TPA, TST, and JA2 (from Palmitate, Stearate, and Oleate enrichments, respectively) |
| MPA1446 | S-*-1446-a-A-18 | 16S rRNA | Strain MPA (from Palmitate enrichment) |
| MST445 | S-*-0445-a-A-18 | 16S rRNA | Clone MST (from Stearate enrichment) |
| MSP1445 | S-*-1445-a-A-18 | 16S rRNA | Clones MOL and MLI (from Oleate and Linoleate enrichment, respectively) |
| DEN220 | | 16S rRNA | Acetate-denitrifying cluster and some members of the
Comamonadaceae family |
| DEN220a | | 16S rRNA | Acetate-denitrifying cluster and some members of the Rhodocyclaceae family |
| DEN441 | | 16S rRNA | Acetate-denitrifying cluster and some members of the Rhodocyclaceae family |
| DEN444 | | 16S rRNA | Acetate-denitrifying cluster |
| DEN1454 | | 16S rRNA | Acetate-denitrifying cluster |
| FB648 | | 16S rRNA | Thioturbo danicus and strain DK4 |
| FB741 | | 16S rRNA | Thioturbo danicus and strain DK4 |
| FB842 | | 16S rRNA | Strain DK4 |
| Rotcl1 | | 16S rRNA | Cluster related to Methanosaeta concilii |
| Rotcl2 | | 16S rRNA | Cluster related to endosymbiont of P. nasuta |
| Rotp13 | | 16S rRNA | Clone Rot13 |
| Rotp17 | | 16S rRNA | Clone Rot17 |
| WPF464 | | 16S rRNA | filaments from hydrothermal vents near White Point |
| VSO673 | | 16S rRNA | Unattached, vacuolate, sulfur-oxidizing bacteria |
| Chlorb I 440 | S-*-Chlorb I-0440-a-A-20 | 16S rRNA | phylotype affiliated with the familiy Chlorobiaceae (DGGE band 21ws) |
| Chlorb II 842 | S-*-Chlorb II-0842-a-A-20 | 16S rRNA | phylotype affiliated with the familiy Chlorobiaceae (DGGE band 24ws) |
| Chlorb III 441 | S-*-Chlorb III-0441-a-A-20 | 16S rRNA | phylotype affiliated with the familiy Chlorobiaceae (DGGE bands 25s, 26s) |
| DEN67 | | 16S rRNA | Methanol-utilizing denitrifying cluster group A closely related to the obligate methylotrophs Methylobacillus and Methylophilus in the order Methylophilales |
| MET1216 | | 16S rRNA | Order Methylophilales |
| SAP553 | | 16S rRNA | Mostly Saprospiraceae family |
| AEHY | | 16S rRNA | Aeromonas hydrophila |
| AESA | | 16S rRNA | Aeromonas salmonicida subsp. Salmonicida |
| EDIC | | 16S rRNA | Edwardsiella ictaluri |
| ESCO | | 16S rRNA | Escherichia coli |
| FLBR | | 16S rRNA | Flavobacterium branchiophilum |
| FLCO | | 16S rRNA | Flavobacterium columnare |
| FLPS | | 16S rRNA | Flavobacterium psychrophilum |
| TEMA | | 16S rRNA | Tenacibaculum maritimum |
| MYCH | | 16S rRNA | Mycobacterium chelonae |
| MYFO | | 16S rRNA | Mycobacterium fortuitum |
| MYMA | | 16S rRNA | Mycobacterium marinum |
| PISA | | 16S rRNA | Piscirickettsia salmonis |
| RESA | | 16S rRNA | Renibacterium salmoninarum |
| STAU | | 16S rRNA | Staphylococcus aureus |
| STIN | | 16S rRNA | Streptococcus iniae |
| VASA | | 16S rRNA | Vagococcus salmoninarum |
| PHPH | | 16S rRNA | Photobacterium phosphoreum |
| YERU | | 16S rRNA | Yersinia ruckeri type I |
| Geo/Blasto | | 16S rRNA | Geodermatophilus/Blastococcus group |
| Modesto | | 16S rRNA | Modestobacter genus |
| UP23b | | 16S rRNA | Urothoe poseidonis clone UP23b |
| Curvi997 | | 16S rRNA | Genus Curvibacter |
| CYT1448 | | 16S rRNA | Cytophaga spp. |
| CYT1438 | | 16S rRNA | Cytophaga spp. |
| NOR5-730 | | 16S rRNA | NOR5 cluster (Gammaproteobacteria) |
| NOR5-130 | | 16S rRNA | NOR5 isolate KT71 (Gammaproteobacteria) |
| ROS537 | | 16S rRNA | Marine alpha cluster |
| KT13-231 | | 16S rRNA | KT1117 (Roseobacter lineage isolate) |
| KT09b | | 16S rRNA | KT0917 (Roseobacter lineage isolate) |
| KT09c | | 16S rRNA | KT0917 (Roseobacter lineage isolate) |
| RC1031 | | 16S rRNA | KT0202a (Roseobacter lineage isolate) |
| RC1239 | | 16S rRNA | KT0202a (Roseobacter lineage isolate) |
| Ros7-1029 | | 16S rRNA | JP7.1 group (marine alpha cluster) |
| Erythro69 | | 16S rRNA | JP13.1 group (Erythrobacter) |
| Rhizo218 | | 16S rRNA | JP66.1 group (Phyllobacterium) |
| MALF-1 | | 16S rRNA | Marine alpha cluster |
| MALF-2 | | 16S rRNA | Marine alpha cluster |
| RSB67 | | 16S rRNA | Subgroup of marine alpha cluster |
| KT13 | | 16S rRNA | Subgroup of marine alpha cluster |
| Lis-1255 | | 16S rRNA | Genus Listeria, Bacillus thermosphacta, Bacillus campestris |
| Salm-63 | | 23S rRNA | Salmonella spp., Plesiomonas shigelloides |
| BEG811 | | 16S rRNA | Frasassi Beggiatoa clade |
| MTB770 | | 16S rRNA | Mycobacterium tuberculosis strains |
| MTB226 | | 16S rRNA | Mycobacterium tuberculosis strains |
| MTB187 | | 16S rRNA | Mycobacterium tuberculosis strains |
| MAVP187 | | 16S rRNA | Mycobacterium avium subsp. avium Mycobacterium avium subsp. paratuberculosis |
| MAVP515 | | 23S rRNA | Mycobacterium avium subsp. Avium Mycobacterium avium subsp. Paratuberculosis |
| MAC2543 | | 23S rRNA | Mycobacterium avium complex |
| MIN351 | | 16S rRNA | Mycobacterium intracellulare |
| MIN1586 | | 23S rRNA | Mycobacterium intracellulare |
| 18Alf-0218 | S-*-18ALF-0218-a-A-18 | 16S rRNA | Methanotrophic symbiont of Sphagnum mosses |
| 18Alf-1437 | S-*-18ALF-1437-a-A-18 | 16S rRNA | Methanotrophic symbiont of Sphagnum mosses |
| SphEch_1249 | | 16S rRNA | Sphingomonas echinoides |
| SteMal_439 | | 16S rRNA | Stenotrophomonas maltophilia |
| SEEP1a-473 | S-*-SP1a-0473-a-A-23 | 16S rRNA | Desulfosarcina/Desulfococcus subgroup SEEP-SRB1a (ANME-2 partner) |
| SEEP1a-1441 | S-*-SP1a-1441-a-A-18 | 16S rRNA | Desulfosarcina/Desulfococcus subgroup SEEP-SRB1a (ANME-2 partner) |
| SEEP1c-1309 | S-*-SP1c-1309-a-A-21 | 16S rRNA | Desulfosarcina/Desulfococcus subgroup SEEP-SRB1c |
| SEEP1f-153 | S-*-SP1f-0153-a-A-18 | 16S rRNA | Desulfosarcina/Desulfococcus subgroup SEEP-SRB1f |
| Pedo_1250 | | 16S rRNA | Pedomicrobium strains |
| SPIRO657 | | 16S rRNA | Sponge-associated phylogenetic lineages of the Spirochaetes phylum. |
| SPIRO1009 | | 16S rRNA | Sponge-associated phylogenetic lineages of the Spirochaetes phylum. |
| CYL | | 16S rRNA | Cylindrospermopsis raciborskii |
| Cboid198 | S-S-C.boid-0198-a-A-18 | 18S rRNA | Candida boidinii |
| S-*-CFB-0655-a-A-18 | S-*-CFB-0655-a-A-18 | 16S rRNA | OTU 8 of CFB (Cytophaga-Flavobacterium-Bacteroides) |
| S-*-CFB-0730-a-A-18 | S-*-CFB-0730-a-A-18 | 16S rRNA | OTU 9 of CFB (Cytophaga-Flavobacterium-Bacteroides) |
| S-*-GNS-0667-a-A-18 | S-*-GNS-0667-a-A-18 | 16S rRNA | OTU 11 and 12 of GNSB (green nonsulfur bacteria) |
| S-*-Opitu-0744-a-A-18 | S-*-Opitu-0744-a-A-18 | 16S rRNA | OTU 13 of Verrucomicrobia |
| ANA103 | | 16S rRNA | Actinomyces naeslundii |
| FUS664 | | 16S rRNA | Fusobacterium nucleatum, |
| MIT588 | | 16S rRNA | Streptococcus oralis |
| ODB1021 | | 16S rRNA | Octadecabacter spp. |
| RSHP995 | | 16S rRNA | Roseobacter sp. strain Shippagan group |
| GPU622 | | 16S rRNA | Glaciecola punicea |
| GVstr214 | | 16S rRNA | Glaciecola sp. strain GVstr214.6 |
| SF825 | | 16S rRNA | Shewanella frigidimarina |
| PSYB476 | | 16S rRNA | Psychrobacter spp. |
| MB-IC022 | | 16S rRNA | Marinobacter sp. strain IC022 group |
| PB223 | | 16S rRNA | Polaribacter spp. |
| GAN850 | | 16S rRNA | Gallibacterium |
| VP403 | | 16S rRNA | Verrucomicrobium, most Prosthecobacter, and uncultured relatives |
| SPA714 | | 16S rRNA | Most Spartobacteria and uncultured relatives |
| SPA649 | | 16S rRNA | Uncultured humic and acidic lake Spartobacteria |
| OPT1169 | | 16S rRNA | Opitutus spp. and uncultured relatives |
| Blsv1030 | | 16S rRNA | Blastochloris viridis |
| Rbla1372 | | 16S rRNA | Rhodobacter blasticus |
| Rbmr151 | | 16S rRNA | Rhodobium marinum, Rhodopseudomonas julia |
| Rvsl139 | | 16S rRNA | Rhodovulum sulfidophilum |
| Cboid198 | S-S-C.boid-0198-a-A-18 | 18S rRNA | Candida boidinii |
| KIN516 | | 18S rRNA | Kinetoplastida |
| CFX197 | S-*-Bact-0197-a-A-18 | 16S rRNA | Eikelboom type 0092 Chloroflexi |
| CFX223 | S-*-Bact-0223-a-A-18 | 16S rRNA | Eikelboom type 0092 Chloroflexi |
| CFX67a | S-*-Bact-0067-a-A-18 | 16S rRNA | Eikelboom type 0914 Chloroflexi |
| CFX67b | S-*-Bact-0067-b-A-18 | 16S rRNA | Eikelboom type 0914 Chloroflexi |
| NITROSO4E | | 16S rRNA | b-Proteobacterial ammonia oxidizers (also Nodularia sp.) |
| NSM1B | | 16S rRNA | Nitrosomonas europaea, Nitrosomonas eutropha, Nitrosococcus mobilis |
| NBAC2 | | 16S rRNA | Nitrobacter winogradskyi, Nitrobacter hamburgensis, Nitrobacter agilis (also Afipia clevelandensis, Afipia felis, Rhodopseudomonas palustris strain, Bradyrhizobium japonicume) |
| ERY174 | | 16S rRNA | Some Novosphingomonas, Erythrobacter and Porphyrobacter |
| PARA739 | | 16S rRNA | Order Rhodobacterales |
| RHIZ1244 | | 16S rRNA | Order Rhizobiales |
| Lepto175 | | 16S rRNA | Leptothrix ochracea |
| Proti_445 | S-G-Proti-0445-a-A-19 | 16S rRNA | primary symbiont of Euplotes samples POH1, EM, FL(12)-VI |
| Proti_467 | S-G-Proti-0467-a-A-18 | 16S rRNA | primary symbiont of Euplotes samples POH1, EM, FL(12)-VI |
| Dbact653 | S-F-Dsb-0653-a-A-18 | 16S rRNA | Desulfococcus/Desulfosarcina/Desulfonema |
| DSU655 | | 16S rRNA | Genus Desulfurella |
| ATAM01 | S-S-A.tam-0775(A. Tamarense)-a-A-18 | 18S rRNA | Alexandrium tamarense species complex |
| ATNA02 | L-St-At.NA-373(A. tamarense)-a-A-18 | 28S rRNA | Alexandrium tamarense /North American clade/Orkney strains |
| ATWE03 | | 28S rRNA | Alexandrium tamarense /Western European clade |
| ATME04 | | 28S rRNA | Alexandrium tamarense / Mediterranean clade |
| DINO01 | S-C-DINO-1404(A. tamarense)-a-A-20 | 18S rRNA | Dinoflagellates / Dinophyceae |
| AOST01 | L-S-A.ost-484(A. ostenfeldii)-a-A-18 | 28S rRNA | Alexandrium ostenfeldii |
| AOST02 | S-S-A.ost-0232(A. ostenfeldii)-a-A-18 | 18S rRNA | Alexandrium ostenfeldii |
| Bfi826 | S-S-But-0826-a-18 | 16S rRNA | Butyrivibrio fibrisolvens-related clones, phylum Firmicutes |
| Rum831 | S-S-Rum-0831-a-16 | 16S rRNA | Rumen clones in family Ruminococcaceae, phylum Firmicutes |
| Lac435 | S-S-Lac-0435-a-16 | 16S rRNA | Clones in family Lachnospiraceae, phylum Firmicutes |
| Ral1436 | S-S-Rum-1436-15 | 16S rRNA | Ruminococcus albus-related clones, phylum Firmicutes |
| Rfl155 | S-S-Rum-0155-a-15 | 16S rRNA | Ruminococcus flavefaciens-related clones, phylum Firmicutes |
| Bac1080 | S-S-Bac-1080-a-18 | 16S rRNA | Clones in order Bacteroidales, phylum Bacteroidetes |
| fir5-575 | | 16S rRNA | Firm-5 (symbiotic Firmicutes phylotype in honey bee) |
| But1243 | S-S-But-1243-a-18 | 16S rRNA | rumen Butyrivibrio clones |
| Clo549 | S-S-Clo-0549-a-18 | 16S rRNA | unclassified Rumen Clostridia clones |
| Inc852 | S-S-Inc-0852-a-18 | 16S rRNA | Rumen Inceatae Sedis XIII clones |
| Pse1257 | S-S-Pse-1257-18 | 16S rRNA | Rumen Pseudobutyrivibrio clones |
| Ace731 | S-S-0731-a-18 | 16S rRNA | Rumen Acetivibrio clones |
| Vei732 | S-S-0732-a-18 | 16S rRNA | Rumen Veillonellaceae clones |
| CV1 | | 18S rRNA | Chromera velia |
| Pseudo120 | | 16S rRNA | rRNA group I pseudomonads |
| SUB 196 | | 16S rRNA | Streptococcus uberis |
| APYO 183 | | 16S rRNA | Arcanobacterium pyogenes |
| CYL | | 16S rRNA | Cylindrospermopsis raciborskii |
| Syner195 | | 16S rRNA | Synergistes group 4 (Synergistetes PD-UASB-13) |
| Lmon | | 16S rRNA | Listeria monocytogenes |
| CLOSs146 | S-S-CLOS-0146-a-18 | 16S rRNA | Incertae Sedis XI |
| CLOSs654 | S-S-CLOS-0654-a-18 | 16S rRNA | Grocilibacteraceae |
| RUMs278 | S-S-Rum-0278-a-18 | 16S rRNA | Ruminococcaceae |
| FIMs1029 | S-S-FIM-1029-1-18 | 16S rRNA | Clostridiaceae 2 |
| Cboid198 | | 18S rRNA | Candida boidinii |
| CJ2 | | 16S rRNA | Polaromonas naphthalenivorans strain CJ2 |
| Bact531R | S-D-Bact-0521-a-A-20 | 16S rRNA | Bacteria |
| bact363F | S-D-Bact-0371-a-S-20 | 16S rRNA | Bacteria |
| R357 | S-D-Bact-0343-a-A-15 | 16S rRNA | Bacteria |
| Uni1392R | S-*-Univ-1392-a-A-15 | 16S rRNA | Bacteria, Archaea, Eukarya |
| 27F | S-D-Bact-0008-c-S-20 | 16S rRNA | Bacteria |
| UA1406R | S-*-Univ-1390-a-A-17 | 16S rRNA | Bacteria, Archaea, Eukarya |
| Bac927R | S-D-Bact-0927-a-A-17 | 16S rRNA | Bacteria |
| 1492R | S-D-Bact-1492-a-A-22 | 16S rRNA | Bacteria |
| Arch20F | S-D-Arch-0020-a-S-19 | 16S rRNA | Archaea |
| Primer 3 | S-D-Bact-0518-c-A-17 | 16S rRNA | Bacteria |
| 518F | S-D-Bact-0518-a-S-17 | 16S rRNA | Bacteria |
| Primer 2 | S-D-Bact-0340-a-A-18 | 16S rRNA | Bacteria |
| 518R | S-D-Bact-0518-a-A-17 | 16S rRNA | Bacteria |
| GM3F | S-D-Bact-0008-a-S-16 | 16S rRNA | Bacteria |
| 907R | S-D-Bact-0907-a-A-20 | 16S rRNA | Bacteria |
| GM4R | S-D-Bact-1492-a-A-16 | 16S rRNA | Bacteria |
| 343F | S-D-Bact-0343-a-S-15 | 16S rRNA | Bacteria |
| 347F | S-D-Bact-0347-a-S-19 | 16S rRNA | Bacteria |
| 784F | S-D-Bact-0784-a-S-15 | 16S rRNA | Bacteria |
| 917F | S-D-Bact-0917-a-S-16 | 16S rRNA | Bacteria |
| 1099F | S-D-Bact-1099-a-S-16 | 16S rRNA | Bacteria |
| 534R | S-D-Bact-0517-a-A-18 | 16S rRNA | Bacteria |
| 798R | S-D-Bact-0784-a-A-15 | 16S rRNA | Bacteria |
| 803R | S-D-Bact-0785-a-A-19 | 16S rRNA | Bacteria |
| 1114R | S-D-Bact-1091-a-A-16 | 16S rRNA | Bacteria |
| 1407R | S-D-Bact-1392-a-A-16 | 16S rRNA | Bacteria |
| 968F | S-D-Bact-0968-a-S-17 | 16S rRNA | Bacteria |
| 1401R | S-D-Bact-1385-a-A-17 | 16S rRNA | Bacteria |
| Pra46F | S-D-Arch-0046-a-S-15 | 16S rRNA | Archaea |
| Parch340F | S-D-Arch-0340-a-S-18 | 16S rRNA | Archaea |
| Parch519R | S-D-Arch-0519-a-A-16 | 16S rRNA | Archaea |
| 967F | S-D-Bact-0967-a-S-19 | 16S rRNA | Bacteria |
| 1046R | S-D-Bact-1046-b-A-19 | 16S rRNA | Bacteria |
| U341F | S-*-Univ-0341-b-S-17 | 16S rRNA | Bacteria, Archaea, Eukarya |
| U751F | S-*-Univ-0750-a-S-18 | 16S rRNA | Bacteria, Archaea, Eukarya |
| Ab789F | S-*-Univ-0789-a-S-18 | 16S rRNA | Bacteria, Archaea, Eukarya |
| Ab906F | S-*-Univ-0906-a-S-17 | 16S rRNA | Bacteria, Archaea, Eukarya |
| U1053F | S-*-Univ-1053-a-S-16 | 16S rRNA | Bacteria, Archaea, Eukarya |
| Ab779F | S-D-Arch-0779-a-S-20 | 16S rRNA | Archaea |
| U529R | S-*-Univ-0522-a-A-18 | 16S rRNA | Bacteria, Archaea, Eukarya |
| UA1406R | S-*-Univ-1390-b-A-17 | 16S rRNA | Bacteria, Archaea, Eukarya |
| U1510R | S-*-Univ-1492-a-A-21 | 16S rRNA | Bacteria, Archaea, Eukarya |
| Arch915R | S-D-Arch-0911-a-A-20 | 16S rRNA | Archaea |
| Arch349F | S-D-Arch-0349-a-S-17 | 16S rRNA | Archaea |
| Arch516F | S-D-Arch-0516-a-S-25 | 16S rRNA | Archaea |
| Arch8F | S-D-Arch-0008-a-S-16 | 16S rRNA | Archaea |
| Arch1492R | S-D-Arch-1492-a-A-19 | 16S rRNA | Archaea |
| U515F | S-*-Univ-0515-a-S-19 | 16S rRNA | Bacteria, Archaea, Eukarya |
| 806R | S-D-Bact-0787-b-A-20 | 16S rRNA | Bacteria |
| U519F | S-*-Univ-0519-a-S-18 | 16S rRNA | Bacteria, Archaea, Eukarya |
| U779F | S-*-Univ-0779-a-S-20 | 16S rRNA | Bacteria, Archaea, Eukarya |
| A519F | S-D-Arch-0519-a-S-15 | 16S rRNA | Archaea |
| 517F | S-D-Bact-0517-a-S-17 | 16S rRNA | Bacteria |
| A519R | S-D-Arch-0519-a-A-19 | 16S rRNA | Archaea |
| A806R | S-D-Arch-0786-a-A-20 | 16S rRNA | Archaea |
| E806R | S-D-Bact-0787-a-A-20 | 16S rRNA | Bacteria |
| Uni1390R | S-*-Univ-1390-a-A-18 | 16S rRNA | Bacteria, Archaea, Eukarya |
| 1492Rc | S-D-Bact-1494-a-A-20 | 16S rRNA | Bacteria |
| B1055f (Bergen) | S-D-Bact.1055-a-S-16 | 16S rRNA | Bacteria |
| Uni522R | S-*-Univ-0517-a-A-15 | 16S rRNA | Bacteria, Archaea, Eukarya |
| 784F | S-D-Bact-0784-a-S-19 | 16S rRNA | Bacteria |
| 1061R | S-D-Bact-1061-a-A-17 | 16S rRNA | Bacteria |
| Arch_344F | S-D-Arch-0340-a-S-14 | 16S rRNA | Archaea |
| Arch855R | S-D-Arch-0896-a-A-20 | 16S rRNA | Archaea |
| Arch1017R | S-D-Arch-1041-a-A-18 | 16S rRNA | Archaea |
| 8F | S-D-Bact-0002-a-S-26 | 16S rRNA | Bacteria |
| 909F | S-D-Bact-0909-a-S-18 | 16S rRNA | Bacteria |
| 1492R | S-D-Bact-1493-a-A-16 | 16S rRNA | Bacteria |
| 520F | S-D-Bact-0564-a-S-15 | 16S rRNA | Bacteria |
| 986F | S-D-Bact-0967-c-S-19 | 16S rRNA | Bacteria |
| 802R | S-D-Bact-0785-b-A-18 | 16S rRNA | Bacteria |
| 1027R | S-D-Bact-1046-a-A-19 | 16S rRNA | Bacteria |
| 967F | S-D-Bact-0967-b-S-19 | 16S rRNA | Bacteria |
| 1046R | S-D-Bact-1028-b-A-19 | 16S rRNA | Bacteria |
| 1391R | S-D-Bact-1391-b-A-17 | 16S rRNA | Bacteria |
| 530F | S-D-Bact-0515-a-S-16 | 16S rRNA | Bacteria |
| 1100R | S-D-Bact-1100-a-A-15 | 16S rRNA | Bacteria |
| pH | S-D-Bact-1522-a-A-20 | 16S rRNA | Bacteria |
| 338 | S-D-Bact-0338-a-A-19 | 16S rRNA | Bacteria |
| 6F | S-D-Bact-0006-a-S-20 | 16S rRNA | Bacteria |
| 27F | S-D-Bact-0008-d-S-20 | 16S rRNA | Bacteria |
| 39F | S-D-Bact-0019-a-S-20 | 16S rRNA | Bacteria |
| 41F | S-D-Bact-0021-a-S-20 | 16S rRNA | Bacteria |
| 63F | S-D-Bact-0043-s-S-21 | 16S rRNA | Bacteria |
| 64F | S-D-Bact-0044-a-S-21 | 16S rRNA | Bacteria |
| 533F | S-D-Bact-0516-a-S-18 | 16S rRNA | Bacteria |
| 908R | S-D-Bact-0908-a-A-18 | 16S rRNA | Bacteria |
| 8aF | S-D-Arch-0008-b-S-16 | 16S rRNA | Archaea |
| 9bF | S-D-Bact-0009-a-S-19 | 16S rRNA | Bacteria |
| 8mcF | S-P-Nano-0008-a-S-16 | 16S rRNA | Nanoarchaea |
| 217kF | S-P-Nano-0216-a-S-20 | 16S rRNA | Nanoarchaea |
| 519mcF | S-P-Nano-0519-a-S-18 | 16S rRNA | Nanoarchaea |
| 1114aR | S-D-Arch-1098-a-A-17 | 16S rRNA | Archaea |
| 515mcR | S-P-Nano-0481-a-A-18 | 16S rRNA | Nanoarchaea |
| 511mcR | S-P-Nano-0485-a-A-14 | 16S rRNA | Nanoarchaea |
| 934mcR | S-P-Nano-0915-a-A-20 | 16S rRNA | Nanoarchaea |
| 1114mcR | S-P-Nano-1082-a-A-17 | 16S rRNA | Nanoarchaea |
| 1406mcR | S-P-Nano-1390-a-A-17 | 16S rRNA | Nanoarchaea |
| 1513mcR | S-P-Nano-1472-a-A-21 | 16S rRNA | Nanoarchaea |
| 533R | S-D-Bact-0515-a-A-19 | 16S rRNA | Bacteria |
| 917F | S-D-Bact-0917-a-S-18 | 16S rRNA | Bacteria |
| 970F | S-D-Bact-0970-a-S-16 | 16S rRNA | Bacteria |
| 1050R | S-D-Bact-1050-a-A-16 | 16S rRNA | Bacteria |
| 1061R | S-D-Bact-1061-a-A-19 | 16S rRNA | Bacteria |
| b341F | S-D-Bact-0341-a-S-17 | 16S rRNA | Bacteria |
| b785 | S-D-Bact-0785-a-A-19 | 16S rRNA | Bacteria |
| 630R | S-D-Bact-1529-a-A-17 | 16S rRNA | Bacteria |
| 909F | S-D-Bact-0907-a-S-20 | 16S rRNA | Bacteria |
| 917Fw | S-D-Bact-0917-a-S-19 | 16S rRNA | Bacteria |
| 1061Rv | S-D-Bact-1061-a-A-20 | 16S rRNA | Bacteria |
| 8f, 616V | S-D-Bact-0008-b-S-20 | 16S rRNA | Bacteria |
| A21f | S-D-Arch-0007-b-S-20 | 16S rRNA | Archaea |
| Ar9r | S-D-Arch-0906-a-A-22 | 16S rRNA | Archaea |
| 27F | S-D-Bact-0009-b-S-19 | 16S rRNA | Bacteria |
| 518R | S-D-Bact-0518-b-A-17 | 16S rRNA | Bacteria |
| 527f | S-D-Bact-0517-a-S-16 | 16S rRNA | Bacteria |
| 536r | S-D-Bact-0519-a-A-18 | 16S rRNA | Bacteria |
| 926r | S-D-Bact-0907-a-A-19 | 16S rRNA | Bacteria |
| P609D | S-D-Bact-0785-a-S-18 | 16S rRNA | Bacteria |
| 68F | S-D-Bact-0049-a-S-21 | 16S rRNA | Bacteria |
| 1492R | S-D-Bact-1492-a-A-19 | 16S rRNA | Bacteria |
| P63F | S-D-Bact-0042-a-S-21 | 16S rRNA | Bacteria |
| P338f | S-D-Bact-0337-a-S-20 | 16S rRNA | Bacteria |
| P518r | S-D-Bact-0518-a-A-17 | 16S rRNA | Bacteria |
| Bact340F | S-D-Bact-0340-a-S-19 | 16S rRNA | Bacteria |
| Bact806R | S-D-Bact-0781-a-A-26 | 16S rRNA | Bacteria |
| Arch934F | S-D-Arch-0915-a-S-19 | 16S rRNA | Archaea |
| Arch344F | S-D-Arch-0344-a-S-20 | 16S rRNA | Archaea |
| A2F | S-D-Arch-0007-a-S-20 | 16S rRNA | Archaea |
| A333F | S-D-Arch-0333-a-S-15 | 16S rRNA | Archaea |
| A16F | S-D-Arch-0008-a-S-17 | 16S rRNA | Archaea |
| U1517R | S-*-Univ-1492-a-A-19 | 16S rRNA | Bacteria, Archaea, Eukarya |
| 1391R | S-D-Bact-1391-a-A-17 | 16S rRNA | Bacteria |
| A109f | S-D-Arch-0109-a-S-17 | 16S rRNA | Archaea |
| A934b | S-D-Arch-0934-a-A-19 | 16S rRNA | Archaea |
| A329 | S-D-Arch-0310-a-A-20 | 16S rRNA | Archaea |
| A693r | S-D-Arch-0693-a-A-15 | 16S rRNA | Archaea |
| Arch958R | S-D-Arch-0958-a-A-19 | 16S rRNA | Archaea |
| 805R | S-D-Bact-0787-a-A-19 | 16S rRNA | Bacteria |
| 8F, pA | S-D-Bact-0008-a-S-20 | 16S rRNA | Bacteria |
| Bakt_341F | S-D-Bact-0341-b-S-17 | 16S rRNA | Bacteria |
| Bakt_805R | S-D-Bact-0785-a-A-21 | 16S rRNA | Bacteria |
| bio-pBR5apos.SEF | S-D-Bact-0006-a-S-22 | 16S rRNA | Bacteria |
| bio-pJBS-V3.SEF | S-D-Bact-0947-a-S-20 | 16S rRNA | Bacteria |
| pBR-V1.ASR | S-D-Bact-0101-a-A-20 | 16S rRNA | Bacteria |
| B-V3.ASR | S-D-Bact-1028-a-A-20 | 16S rRNA | Bacteria |
| GM12R | S-D-Bact-1175-a-A-19 | 16S rRNA | Bacteria |
| Arch958BF | S-D-Arch-0938-b-S-19 | 16S rRNA | Archaea |
| Arch958BF | S-D-Arch-0958-a-S-19 | 16S rRNA | Archaea |
| Arch958VR | S-D-Arch-0958-b-A-19 | 16S rRNA | Archaea |
| Arch9Fa | S-D-Arch-0009-a-S-17 | 16S rRNA | Archaea |
| Arch9Fb | S-D-Arch-0009-b-S-17 | 16S rRNA | Archaea |
| Arch9Fab | S-D-Arch-0009-c-S-17 | 16S rRNA | Archaea |
| A8f (Bergen) | S-D-Arch-0007-a-S-21 | 16S rRNA | Archaea |
| Arch958F | S-D-Arch-0958-a-S-19 | 16S rRNA | Archaea |
| Bac967Fb | S-D-Bact-0967-d-S-19 | 16S rRNA | Bacteria |
| Bac967Fc | S-D-Bact-0967-e-S-19 | 16S rRNA | Bacteria |
| Bac967Fd | S-D-Bact-0967-f-S-19 | 16S rRNA | Bacteria |
| Bac967Fe | S-D-Bact-0967-g-S-19 | 16S rRNA | Bacteria |
| Arch1048R | S-D-Arch-1048-a-A17 | 16S rRNA | Archaea |
| Bac1046Rb | S-D-Bact-1028-c-A-19 | 16S rRNA | Bacteria |
| Bac1046Rc | S-D-Bact-1028-d-A-19 | 16S rRNA | Bacteria |
| Bac1046Rd | S-D-Bact-1028-e-A-19 | 16S rRNA | Bacteria |
| P699D | S-*-Univ-1100-a-S-15 | 16S rRNA | Bacteria, Archaea, Eukarya |
| A616D | S-D-Arch-0010-a-S-17 | 16S rRNA | Archaea |
| P699R | S-*-Univ-1100-a-A-15 | 16S rRNA | Bacteria, Archaea, Eukarya |
| P1425 | S-*-Univ-1525-a-A-17 | 16S rRNA | Bacteria, Archaea, Eukarya |
| Arch958F | S-D-Arch-0938-a-S-19 | 16S rRNA | Archaea |
| 967R | S-D-Bact-0967-a-A-19 | 16S rRNA | Bacteria |
| U906R | S-*-Univ-0906-a-A-17 | 16S rRNA | Bacteria, Archaea, Eukarya |
| U1053R | S-*-Univ-1053-a-A-16 | 16S rRNA | Bacteria, Archaea, Eukarya |
| Arch915F | S-D-Arch-0915-a-S-20 | 16S rRNA | Archaea |
| P609R | S-D-Bact-0785-a-A-18 | 16S rRNA | Bacteria |
| pBR-V1.ASF | S-D-Bact-0101-a-S-20 | 16S rRNA | Bacteria |
| bio-pJBS-V3.SER | S-D-Bact-0947-a-A-20 | 16S rRNA | Bacteria |
| NebProb203 | S-S-Neby-0203-a-A-18 | 16S rRNA | Candidatus Nebulobacter yamunensis |
| FNFProb759 | S-*-Bact-0759-a-A-17 | 16S rRNA | Bacteroidetes, Francisellaceae, other prokaryotes |
| CF418 | S-P-Flavo-0418-a-S-18 | 16S rRNA | Phylum Bacteroidetes |
| Ng02 | | 16S rRNA | Nosema / Vairimorpha genus (microsporidia) |
| Dd04 | | 16S rRNA | Dictyocoela (microsporidia) |
| AQI338 | | 16S rRNA | Phylum Aquificae (except Desulfurobacteriaceae) |
| SFH646 | | 16S rRNA | Sulfurihydrogenibium spp. (except S. Yellowstonense) including Nakabusa microbial mat sequences |
| Deflu_197 | S-S-Deflu-0197-a-A-20 | 16S rRNA | Candidatus Defluviella procrastinata |
| CyrIn_142 | S-S-Cyrz-0142-a-A-23 | 16S rRNA | Candidatus Cyrtobacter zanobii |
| Faecali698 | | 16S rRNA | Faecalibacterium and relatives |
| Clep866 | S-*-Clep-0866-a-A-18 | 16S rRNA | members of the Clostridium leptum subgroup |
| Rcal733 | S-*-Rcal-0733-a-A-20 | 16S rRNA | members of the Ruminococcus callidus species |
| Cvir1414 | S-*-Cvir-1414-a-A-18 | 16S rRNA | Clostridium viride cluster |
| Edes635 | S-*-Edes-0635-a-A-18 | 16S rRNA | Eubacterium desmolans species |
| Bfrag 998 | S-S-Bfrag-0998-a-A-20 | 16S rRNA | Bacteroides fragilis |
| Bvulg 1017 | S-S-Bvulg-1017-a-A-21 | 16S rRNA | Bacteroides vulgatus |
| Fprau0645 | S-*-Fprau-0645-a-A-23 | 16S rRNA | Feacalibacterium (Fusobacterium) prausnitzii and relatives |
| Mcs487 | S-S-Mcs-0487-a-A-21 | 16S rRNA | Mucispirillum spp. |
| Mcs547 | S-S-Mcs-0547-a-A-20 | 16S rRNA | Mucispirillum spp. |
| MUC-1437 | S-G-Akk-1437-a-A-20 | 16S rRNA | Akkermansia muciniphila |
| Bacid1 | | 16S rRNA | B. acidifaciens Group 1 |
| Bacid2 | | 16S rRNA | B. acidifaciens Group 2 |
| Bacid3 | | 16S rRNA | B. acidifaciens Group 3 |
| Bot | | 16S rRNA | B. ovatus and B. thetaiotaomicron |
| Bova | | 16S rRNA | Bacteroides ovatus |
| Bthe | | 16S rRNA | Bacteroides thethaiotaomicron |
| Buni | | 16S rRNA | Bacteroides uniformis |
| Bcac | | 16S rRNA | Bacteroides caccae |
| P(T)AFO | | 16S rRNA | Tannerella forsythensis (Bacteroides forsythus) |
| POGI | | 16S rRNA | Porphyromonas gingivalis and uncultured Porphyromonas |
| PRIN | | 16S rRNA | Prevotella intermedia, Prevotella falsenii and uncultured Prevotella |
| Bovat 1028 | S-S-Bovat-1028-a-A-19 | 16S rRNA | Bacteroides ovatus |
| Bdist 1025 | S-S-Bdist-1025-a-A-19 | 16S rRNA | Bacteroides distasonis (Parabacteroides distasonis) |
| Bputre 698 | S-S-Bputre-698-a-A-20 | 16S rRNA | Bacteroides putredinis (Alistipes putredinis) |
| Efs | | 23S rRNA | Enterococcus faecalis FAIR E 92 |
| LPLANG | | 16S rRNA | Lactobacillus plantarum 423 |
| LSAL | | 16S rRNA | Lactobacillus salvirius 241 |
| Lba | | 23S rRNA | Lactobacillus acidophilus (cluster A1) |
| Lbg | | 23S rRNA | Lactobacillus gasseri (cluster B1) |
| Lbj | | 23S rRNA | Lactobacillus johnsonii (cluster B2) |
| LSPotu9468-999 | S-*-Lsp-999-a-A-20 | 16S rRNA | Lachnospiraceae OTU_9468 |
| LSPotu9468-1259 | S-*-Lsp-1259-a-A-20 | 16S rRNA | Lachnospiraceae OTU_9468 |
| Bacto1080 | S-*-Bacto-1080-a-A-18 | 16S rRNA | Bacteroides, Prevotella, and Porphyromonas |
| Enter1432 | S-G-Enter-1432-a-A-15 | 16S rRNA | enteric group (Enterobacteriales) |
| Lacto722 | S-G-Lacb-0722-a-A-25 | 16S rRNA | Lactobacillus group |
| Ceut705 | S-*-Ceut-0705-a-A-21 | 16S rRNA | Coprococcus eutactus |
| Chis150 | S-*-Chis-0150-a-A-23 | 16S rRNA | most of the Clostridium histolyticum group (Clostridium cluster I and II) |
| LSPotu11021-1448 | S-*-Lsp-1448-a-A-18 | 16S rRNA | Lachnospiraceae OTU_11021 |
| Law1 | | 16S rRNA | Lawsonia intracellularis |
| Lab158 | S-G-Lab-0158-a-A20 | 0S rRNA | Lactobacilli Enterococci |
| Rrec584 | | 16S rRNA | Roseburia |
| Prop853 | | 16S rRNA | Clostridial cluster IX |
| Bx183 | S-S-B.x-0183-a-A-18 | 16S rRNA | Brachyspira aalborgi clusters 2 and 3 |
| Aalborgi183 | S-S-B.aalborgi-0183-a-A | 16S rRNA | Brachyspira aalborgi cluster 1 |
| Erec834 | S-S-Erec-0834-a-A-18 | 16S rRNA | Eubacterium rectale |
| Erec838 | S-S-Erec-0838-b-A-20 | 16S rRNA | Eubacterium rectale |
| Etor727 | S-S-Etor-0727-a-A-18 | 16S rRNA | Eubacterium tortuosum |
| Etor129 | S-S-Etor-0129-b-A-18 | 16S rRNA | Eubacterium tortuosum |
| Lbd | | 23S rRNA | Lactobacillus delbrueckii subsp. |
| EC 1531 | L-S-Eco-1531-a-A-21 | 23S rRNA | Escherichia coli BJ4 |
| Laci66 | | 16S rRNA | Lactobacillus acidophilus |
| Lfer66 | | 16S rRNA | Lactobacillus fermentum |
| Lpla67 | | 16S rRNA | Lactobacillus plantarum |
| Lrum67 | | 16S rRNA | Lactobacillus ruminis |
| Lreu92 | | 16S rRNA | Lactobacillus reuteri |
| Lbre90 | | 16S rRNA | Lactobacillus brevis |
| Lcarh | | 23S rRNA | Lactobacillus casei/rhamnosus |
| Lpcar | | 23S rRNA | Lactobacillus casei/paracasei/rhamnosus |
| Ldel | | 23S rRNA | Lactobacillus delbrueckii |
| Lpar | | 23S rRNA | Lactobacillus paracasei |
| Lsak | | 23S rRNA | Lactobacillus sakei |
| Eubac576 | S-St-xxxx-0576-a-A-18 | 16S rRNA | Eubacterium sp. Trains L1-83
and A2-194 |
| Copr60 | S-St-xxxx-0060-a-A-18 | 16S rRNA | Coprococcus sp. Strain L2-50 |
| SER1410 | L-G-Serp-1410-a-A-19 | 23S rRNA | Brachyspira |
| Hyo1210 | L-S-S.hyo-1210-a-A-19 | 23S rRNA | Brachyspira hyodysenteriae |
| Pilosi209 | S-S-S.pilo-0209-a-A-18 | 16S rRNA | Serpulina pilosicoli (Brachyspira pilosicoli) |
| Pilosi1405 | L-S-S.pilo-1405-a-A-20 | 23S rRNA | Serpulina pilosicoli (Brachyspira pilosicoli) |
| Sym_Stau_303 | | 16S rRNA | Bacteroidales clone Candidatus Vestibaculum illigatum |
| Ntlc439 | S-G-Ntlc-439-a-A-18 | 16S rRNA | Nitrolancetus hollandicus |
| Bif228 | S-G-Bif-228-a-A-18 | 16S rRNA | Bifidobacteria |
| Ntlc804 | S-G-Ntlc-804-a-A-18 | 16S rRNA | Nitrolancetus hollandicus |
| Alsym16S | S-G-Burk-0642-a-A-19 | 16S rRNA | Burkholderia (Alydidae gut symbionts) |
| MCP52 | | 16S rRNA | Mollicutes |
| CPla-1 | | 16S rRNA | „Termite planctomycete cluster 1“ |
| CPla-2 | | 16S rRNA | „Termite planctomycete cluster 2“ |
| CPla-3 | | 16S rRNA | „Termite planctomycete cluster 2“ |
| LytiProb_433 | S-G-Lyti-0433-a-A-21 | 16S rRNA | genus Lyticum |
| Lflag_268 | S-S-Lfla-0268-a-A-23 | 16S rRNA | Lyticum flagellatum |
| Lsinu_268 | S-S-Lsin-0268-a-A-23 | 16S rRNA | Lyticum sinuosum |
| Rick_697 | S-F-Rick-0697-a-A-22 | 16S rRNA | Rickettsiaceae |
| TrichoRick_142 | S-S-Tric-0142-a-A-22 | 16S rRNA | Candidatus Trichorickettsia mobilis |
| GigaRick_436 | S-S-Giga-0436-a-A-20 | 16S rRNA | Candidatus Gigarickettsia flagellata |
| RickFla_430 | S-2S-RiFla-0430-a-A-22 | 16S rRNA | Candidatus Trichorickettsia mobilis and Candidatus Gigarickettsia flagellata |
| Pse136 | S-S-Pse-136-a-A-20 | 16S rRNA | Some Pseudomonas populations |
| Pse136b | S-S-Pse-136b-a-A-20 | 16S rRNA | Some Pseudomonas populations |
| Pse910 | S-S-Pse-910-a-A-18 | 16S rRNA | Some Pseudomonas populations |
| Hal180 | S-S-Hal-180-a-A-22 | 16S rRNA | Some Halomonas populations |
| Elo1-1250 | S-S-Elo1-1250-a-A-18 | 16S rRNA | Tetrasphaera elongata and related clones |
| Tet1-823 | S-S-Tet1-823-a-A-18 | 16S rRNA | Tetrasphaera elongata-related clones |
| Tet1-266 | S-S-Tet1-266-a-A-18 | 16S rRNA | Tetrasphaera Clone ASM31 |
| Tet2-842 | S-S-Tet2-842-a-A-18 | 16S rRNA | Clones related to Tetrasphaera jenkinsii, Tetrasphaera australiensis, and Tetrasphaera veronensis |
| Tet2-831 | S-S-Tet2-831-a-A-18 | 16S rRNA | Tetrasphaera australiensis, Tetrasphaera veronensis, and uncultured Tetrasphaera |
| Tet2-892 | S-S-Tet2-892-a-A-18 | 16S rRNA | Tetrasphaera Clone ASM47 |
| Tet2-87 | S-S-Tet2-87-a-A-18 | 16S rRNA | Uncultured Tetrasphaera |
| Tet2-174 | S-S-Tet2-174-a-A-18 | 16S rRNA | Tetrasphaera jenkinsii, Tetrasphaera australiensis, Tetrasphaera veronensis, and Candidatus Nostocoida limicola |
| Tet3-654 | S-S-Tet3-654-a-A-18 | 16S rRNA | 3 Uncultured Tetrasphaera |
| Tet3-19 | S-S-Tet3-19-a-A-18 | 16S rRNA | Tetrasphaera Clone ASM57 |
| Str56 | S-S-Str-56-a-A-18 | 16S rRNA | Streptococcus spp. |
| Lac93 | S-S-Lac-93-a-A-18 | 16S rRNA | Lactococcus spp. |
| Pro60 | S-S-Pro-60-a-A-18 | 16S rRNA | Propionicimonas spp. |
| LasA3720_1281 | S-*-LspA-1281-a-A-23 | 16S rRNA | subgroup A of unclassified Lachnospiraceae OTU |
| LasB3720_1281 | S-*-LspB-1281-a-A-23 | 16S rRNA | subgroup B of unclassified Lachnospiraceae OTU |
| Bac16065_472 | S-*-Bada-0472-a-A-24 | 16S rRNA | unclassified Bacteroidales cluster S24-7 OTU |
| Bac3732_846 | S-*-Bada-0846-a-A-24 | 16S rRNA | unclassified Bacteroidales cluster S24-7 OTU |
| Bac11839_649 | S-*-Bada-0649-a-A-23 | 16S rRNA | unclassified Bacteroidales cluster S24-7 OTU |
| Bac15326_476 | S-*-Bada-0476-a-A-23 | 16S rRNA | unclassified Bacteroidales cluster S24-7 OTU |
| Bac13481_437 | S-*-Bada-0437-a-A-22 | 16S rRNA | unclassified Bacteroidales cluster S24-7 OTU |
| All3256_484 | S-*-Allb-0484-a-A-22 | 16S rRNA | subgroup of genus Allobaculum |
| Baci731A_87 | S-*-Baci-0087-a-A-24 | 16S rRNA | Bacteroides acidifaciens Group-2 |
| Baci731B_87 | S-*-Baci-0087-a-A-22 | 16S rRNA | Bacteroides acidifaciens Group-1 |
| Rum14644A_184 | S-*-Ruco-0184-a-A-23 | 16S rRNA | unclassified Oscillibacter OTU |
| Rum14644B_64 | S-*-Ruco-0064-a-A-24 | 16S rRNA | unclassified Oscillibacter OTU |
| Rum17903_443 | S-*-Ruco-0443-a-A-20 | 16S rRNA | unclassified Ruminococcaceae OTU |
| LasA5944_580 | S-*-LspA-0580-a-A-24 | 16S rRNA | subgroup A of unclassified Lachnospiraceae OTU |
| LasB5944_580 | S-*-LspB-0580-a-A-24 | 16S rRNA | subgroup B of unclassified Lachnospiraceae OTU |
| Lab9057_570 | S-S-Lbad-0570-a-A-23 | 16S rRNA | Lactobacillus taiwanensis - L. johnsonii - L. gasseri group |
| Lab2185_87 | S-*-Lbre-0087-a-A-24 | 16S rRNA | Lactobacillus reuteri |
| UCB-823 | | 16S rRNA | Plasticicumulans acidivorans |
| ULB-450 | | 16S rRNA | Plasticicumulans lactivorans |
| UCB-127 | | 16S rRNA | Plasticicumulans acidivorans |
| L.mars_symb1 | | 16S rRNA | Endosymbiont type A of Lamellibrachia anaximandri (Marsili seamount) |
| L.mars_symb2 | | 16S rRNA | Endosymbiont type B of Lamellibrachia anaximandri (Marsili seamount) |
| volv-835 | | 16S rRNA | Rickettsial endosymbionts hosted by Carteria, Pleodorina, Volvox (green algae) and Diophrys appendiculata (ciliate) |
| help-volv1 | | 16S rRNA | Rickettsiaceae |
| help-volv2 | | 16S rRNA | Rickettsial endosymbionts of Carteria, Pleodorina, Volvox (green algae) and Diophrys appendiculata (ciliate) |
| MEVE845 | S-G-MEVE-0845-a-A-21 | 16S rRNA | genus Methyloversatilis |
| PDD8_644 | | 16S rRNA | Candidatus Cochliophilus cryoturris, symbiont of Cochliopodium minus |
| ZMS152 | | 16S rRNA | Zoothamnium mariella ectosymbiont |
| ZMS1239 | | 16S rRNA | Zoothamnium mariella ectosymbiont |
