| Probe name |
Specificity |
| Fibr225 | Fibrobacter |
| Bif1278 | Bifidobacterium spp. |
| LSPotu11021-1127 | Lachnospiraceae OTU_11021 |
| Bif164 | Bifidobacterium spp. |
| Bif662 | Bifidobacterium spp. |
| Clept1240 | Clostridium leptum |
| gam1-1246 | “Candidatus Gilliamella apicola” or Gamma-1 (symbiotic Gammaproteobacteria phylotype in honey bee) |
| LM3 | Bifidobacterium genus |
| E.bar1237 | Eubacterium barkeri |
| E.bif462 | Eubacterium biforme |
| E.con1122 | Eubacterium contortum |
| E.cyl461 | Eubacterium cylindroides |
| E.cyl466 | Eubacterium cylindroides |
| E.dol183 | Eubacterium dolichum |
| E.had579 | Eubacterium hadrum (Anaerostipes hadrus) |
| E.len194 | Eubacterium lentum |
| E.lim1433 | Eubacterium limosum E. callanderi |
| E.mon84 | Eubacterium moniliforme |
| E.ven66 | Eubacterium ventriosum |
| Acac194 | Anaerostipes caccae |
| Rint1102 | Roseburia intestinalis, human gut isolates L1-952, L1-93, L1-8151, L1-810, and L1-82 |
| Ehal578 | Eubacterium hallii, E. hallii L2-7 |
| Fpra655 | Faecalibacterium prausnitzii A2-165 and L2-6 |
| Rint623 | Roseburia cecicola, Roseburia intestinalis, human gut isolates L1-81, L1-83, L1-8151, L1-82, L1-952, L1-810, L1-93, A2-194, and A1-86, bacterium clones adhufec8, adhufec225, adhufec150, and adhufec75.25 rumen clones 4C28d-8, 4C3d-14, and 3C3d-8 |
| Emul183 | Eubacterium multiforme |
| Esab1467 | Eubacterium saburreum |
| Eram997 | Eubacterium ramulus |
| Erec207 | Eubacterium rectale sp. strain A1-86 |
| beta-572 | Candidatus Snodgrassella alvi or Beta (symbiotic Neisseriaceae phylotype in honey bee) |
| COR653 | Coriobacterium group (Coriobacterium and Collinsella) |
| ATO291 | Atopobium cluster |
| Erec482 | most of the Clostridium coccoides-Eubacterium rectale group (Clostridium cluster XIVa and XIVb) |
| Hyo1210 | Brachyspira hyodysenteriae |
| Pilosi209 | Serpulina pilosicoli (Brachyspira pilosicoli) |
| Pilosi1405 | Serpulina pilosicoli (Brachyspira pilosicoli) |
| Sym_Stau_303 | Bacteroidales clone Candidatus Vestibaculum illigatum |
| Bif228 | Bifidobacteria |
| Alsym16S | Burkholderia (Alydidae gut symbionts) |
| MCP52 | Mollicutes |
| CPla-1 | „Termite planctomycete cluster 1“ |
| CPla-2 | „Termite planctomycete cluster 2“ |
| CPla-3 | „Termite planctomycete cluster 2“ |
| fir5-575 | Firm-5 (symbiotic Firmicutes phylotype in honey bee) |
| Faecali698 | Faecalibacterium and relatives |
| Clep866 | members of the Clostridium leptum subgroup |
| Rcal733 | members of the Ruminococcus callidus species |
| Cvir1414 | Clostridium viride cluster |
| Edes635 | Eubacterium desmolans species |
| Bfrag 998 | Bacteroides fragilis |
| Bvulg 1017 | Bacteroides vulgatus |
| Fprau0645 | Feacalibacterium (Fusobacterium) prausnitzii and relatives |
| Mcs487 | Mucispirillum spp. |
| Mcs547 | Mucispirillum spp. |
| MUC-1437 | Akkermansia muciniphila |
| Bacid1 | B. acidifaciens Group 1 |
| Bacid2 | B. acidifaciens Group 2 |
| Bacid3 | B. acidifaciens Group 3 |
| Bot | B. ovatus and B. thetaiotaomicron |
| Bova | Bacteroides ovatus |
| Bthe | Bacteroides thethaiotaomicron |
| Buni | Bacteroides uniformis |
| Bcac | Bacteroides caccae |
| Bovat 1028 | Bacteroides ovatus |
| Bdist 1025 | Bacteroides distasonis (Parabacteroides distasonis) |
| Bputre 698 | Bacteroides putredinis (Alistipes putredinis) |
| Efs | Enterococcus faecalis FAIR E 92 |
| LPLANG | Lactobacillus plantarum 423 |
| LSAL | Lactobacillus salvirius 241 |
| Lba | Lactobacillus acidophilus (cluster A1) |
| Lbg | Lactobacillus gasseri (cluster B1) |
| Lbj | Lactobacillus johnsonii (cluster B2) |
| LSPotu9468-999 | Lachnospiraceae OTU_9468 |
| LSPotu9468-1259 | Lachnospiraceae OTU_9468 |
| Bacto1080 | Bacteroides, Prevotella, and Porphyromonas |
| Enter1432 | enteric group (Enterobacteriales) |
| Lacto722 | Lactobacillus group |
| Ceut705 | Coprococcus eutactus |
| Chis150 | most of the Clostridium histolyticum group (Clostridium cluster I and II) |
| LSPotu11021-1448 | Lachnospiraceae OTU_11021 |
| Law1 | Lawsonia intracellularis |
| Lab158 | Lactobacilli Enterococci |
| Rrec584 | Roseburia |
| Prop853 | Clostridial cluster IX |
| Bx183 | Brachyspira aalborgi clusters 2 and 3 |
| Aalborgi183 | Brachyspira aalborgi cluster 1 |
| Erec834 | Eubacterium rectale |
| Erec838 | Eubacterium rectale |
| Etor727 | Eubacterium tortuosum |
| Etor129 | Eubacterium tortuosum |
| Lbd | Lactobacillus delbrueckii subsp. |
| EC 1531 | Escherichia coli BJ4 |
| Laci66 | Lactobacillus acidophilus |
| Lfer66 | Lactobacillus fermentum |
| Lpla67 | Lactobacillus plantarum |
| Lrum67 | Lactobacillus ruminis |
| Lreu92 | Lactobacillus reuteri |
| Lbre90 | Lactobacillus brevis |
| Lcarh | Lactobacillus casei/rhamnosus |
| Lpcar | Lactobacillus casei/paracasei/rhamnosus |
| Ldel | Lactobacillus delbrueckii |
| Lpar | Lactobacillus paracasei |
| Lsak | Lactobacillus sakei |
| Eubac576 | Eubacterium sp. Trains L1-83
and A2-194 |
| Copr60 | Coprococcus sp. Strain L2-50 |
| SER1410 | Brachyspira |
| LasA3720_1281 | subgroup A of unclassified Lachnospiraceae OTU |
| LasB3720_1281 | subgroup B of unclassified Lachnospiraceae OTU |
| Bac16065_472 | unclassified Bacteroidales cluster S24-7 OTU |
| Bac3732_846 | unclassified Bacteroidales cluster S24-7 OTU |
| Bac11839_649 | unclassified Bacteroidales cluster S24-7 OTU |
| Bac15326_476 | unclassified Bacteroidales cluster S24-7 OTU |
| Bac13481_437 | unclassified Bacteroidales cluster S24-7 OTU |
| All3256_484 | subgroup of genus Allobaculum |
| Baci731A_87 | Bacteroides acidifaciens Group-2 |
| Baci731B_87 | Bacteroides acidifaciens Group-1 |
| Rum14644A_184 | unclassified Oscillibacter OTU |
| Rum14644B_64 | unclassified Oscillibacter OTU |
| Rum17903_443 | unclassified Ruminococcaceae OTU |
| LasA5944_580 | subgroup A of unclassified Lachnospiraceae OTU |
| LasB5944_580 | subgroup B of unclassified Lachnospiraceae OTU |
| Lab9057_570 | Lactobacillus taiwanensis - L. johnsonii - L. gasseri group |
| Lab2185_87 | Lactobacillus reuteri |
