Microarray details
| Array name | Compost Community-Microarray |
| Array Description | Oligonucleotide microarray (microchip) for characterization of bacterial communities in compost. The microarray contains 56 16S rRNA-targeted oligonucleotides of parallel and hierarchical specificity designed according to the multiple probe concept. |
| Array technique | Oligonucleotide probes with a 12 dTTP spacer-element (most of them) and amino-modification at the 5'-terminal end were spotted on aldehyde-group coated glass slides. |
| Reference | Design and application of an oligonucleotide microarray for the investigation of compost microbial communities. Franke-Whittle IH, Klammer SH, Insam H. Journal of microbiological methods. 2005. |
| Probename | Name (Alm et al.) |
|---|---|
| KO 218 | S-S-Saur-0069-a-A-19 |
| KO 219 | S-*-HpylA-0162-a-A-24 |
| KO 221 | S-S-CfalA-0062-a-A-20 |
| KO 222 | S-S-CfalB-1443-a-A-19 |
| KO 223 | S-S-CtetA-0116-a-A-19 |
| KO 224 | S-S-CtetB-0746-a-A-19 |
| KO 225 | S-S-Cperf-0185-a-A-20 |
| KO 226 | S-*-Cbut-0183-a-A-21 |
| KO 227 | S-S-CdifC-1009-a-A-19 |
| KO 228 | S-*-AhydA-0466-a-A-23 |
| KO 229 | S-*-AhydB-0454-a-A-21 |
| KO 230 | S-*-Nmena-0454-a-A-20 |
| KO 231 | S-*-Nmenb-0454-a-A-20 |
| KO 232 | S-*-Vchol-0122-a-A-18 |
| KO 233 | S-S-Alwo-0574-a-A-18 |
| KO 235 | S-G-Strep-655-a-A-19 |
| KO 01 | S-S-Thth-0068-a-A-19 |
| KO 02 | S-G-Art1-1014-a-A-19 |
| KO 03 | S-G-Art2-1012-a-A-20 |
| KO 04 | S-G-Art3-1038-a-A-21 |
| KO 05 | S-S-Agrtu-0136-a-A-23 |
| KO 06 | S-S-Agrtu-0133-a-A-23 |
| KO 07 | S-G-Thact-0623-a-A-22 |
| KO 08 | S-G-Strp-1246-a-A-21 |
| KO 09 | S-G-Strth-0136-a-A-19 |
| KO 10 | S-S-Thmch-1437-a-A-20 |
| KO 11 | S-S-Thmcu-0447-a-A-22 |
| KO 12 | S-S-Psae-0148-a-A-22 |
| KO 201 | S-*-Aaacc-0644-a-A-18 |
| KO 202 | S-*-Aaacc-0443-a-A-19 |
| KO 203 | S-S-RPsBD-0069-a-A-18 |
| KO 204 | S-*-Xanth-0210-a-A-18 |
| KO 205 | S-S-Azbr-1012-a-A-19 |
| KO 206 | S-S-Hrub-0460-a-A-25 |
| KO 207 | S-S-Gdia-1012-a-A-18 |
| KO 208 | S-S-Gliq-0583-a-A-18 |
| KO 209 | S-S-XfasB-0834-a-A-19 |
| KO 210 | S-S-XfastC-0078-a-A-21 |
| KO 211 | S-*-Psalc-0631-a-A-21 |
| KO 212 | S-S-Eamya-0444-a-A-18 |
| KO 213 | S-S-Eamyb-0445-a-A-18 |
| KO 214 | S-*-Yenta-0443-a-A-19 |
| KO 215 | S-S-Yentb-0443-a-A-19 |
| KO 216 | S-S-Stpy-0174-a-A-21 |
Color codes
- Primer
- Probes used for FISH
