List of references at probeBase

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Reference title Pubmed-ID
"Candidatus anadelfobacter veles" and "Candidatus cyrtobacter comes," two new rickettsiales species hosted by the protist ciliate Euplotes harpa (Ciliophora, Spirotrichea). Vannini C, Ferrantini F, Schleifer KH, Ludwig W, Verni F, Petroni G. Applied and environmental microbiology. 2010. 20435776
"Candidatus Paraholospora nucleivisitans", an intracellular bacterium in Paramecium sexaurelia shuttles between the cytoplasm and the nucleus of its host. Eschbach E, Pfannkuchen M, Schweikert M, Drutschmann D, Brümmer F, Fokin S, Ludwig W, Görtz HD. Systematic and applied microbiology. 2009. 19679418
"Candidatus Thiobios zoothamnicoli," an ectosymbiotic bacterium covering the giant marine ciliate Zoothamnium niveum. Rinke C, Schmitz-Esser S, Stoecker K, Nussbaumer AD, Molnár DA, Vanura K, Wagner M, Horn M, Ott JA, Bright M. Applied and environmental microbiology. 2006. 16517650
"Endomicrobia": cytoplasmic symbionts of termite gut protozoa form a separate phylum of prokaryotes. Stingl U, Radek R, Yang H, Brune A. Applied and environmental microbiology. 2005. 15746350
'Candidatus Halomonas phosphatis', a novel polyphosphate-accumulating organism in full-scale enhanced biological phosphorus removal plants. Nguyen HT, Nielsen JL, Nielsen PH. Environmental microbiology. 2012. 22827168
'Candidatus Rhabdochlamydia porcellionis', an intracellular bacterium from the hepatopancreas of the terrestrial isopod Porcellio scaber (Crustacea: Isopoda). Kostanjsek R, Strus J, Drobne D, Avgustin G. International journal of systematic and evolutionary microbiology. 2004. 15023973
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16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the betaproteobacterial order "Rhodocyclales". Loy A, Schulz C, Lücker S, Schöpfer-Wendels A, Stoecker K, Baranyi C, Lehner A, Wagner M. Applied and environmental microbiology. 2005. 15746340
16S rRNA gene-based phylogenetic microarray for simultaneous identification of members of the genus Burkholderia. Schönmann S, Loy A, Wimmersberger C, Sobek J, Aquino C, Vandamme P, Frey B, Rehrauer H, Eberl L. Environmental microbiology. 2009. 19396938
16S rRNA Targeted Probes for the Identification of Bacterial Strains Isolated from Cultures of the Toxic Dinoflagellate Alexandrium tamarense. Groben R, Doucette GJ, Kopp M, Kodama M, Amann R, Medlin LK. Microbial ecology. 2000. 12035095
16S rRNA-targeted oligonucleotide probes for the in situ detection of members of the phylum Cytophaga-Flavobacterium-Bacteroides. Weller R, Glöckner FO, Amann R. Systematic and applied microbiology. 2000. 10879984
16S-23S rDNA intergenic spacer and 23S rDNA of anaerobic ammonium-oxidizing bacteria: implications for phylogeny and in situ detection. Schmid M, Schmitz-Esser S, Jetten M, Wagner M. Environmental microbiology. 2001. 11553235
A bacterium belonging to the Rickettsiaceae family inhabits the cytoplasm of the marine ciliate Diophrys appendiculata (Ciliophora, Hypotrichia). Vannini C, Petroni G, Verni F, Rosati G. Microbial ecology. 2005. 16003470
A CARD-FISH protocol for the identification and enumeration of cyanobacterial akinetes in lake sediments. Ramm J, Lupu A, Hadas O, Ballot A, Rücker J, Wiedner C, Sukenik A. FEMS microbiology ecology. 2012. 22537189
A DNA microarray platform based on direct detection of rRNA for characterization of freshwater sediment-related prokaryotic communities. Peplies J, Lachmund C, Glöckner FO, Manz W. Applied and environmental microbiology. 2006. 16820477
A fluorescently-labelled r-RNA targeted oligonucleotide probe for the in situ detection of G-bacteria of the genus Amaricoccus in activated sludge. Maszenan A, Seviour RJ, Patel BK, Wanner J. Journal of applied microbiology. 2000. 10792543
A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring. Hatzenpichler R, Lebedeva EV, Spieck E, Stoecker K, Richter A, Daims H, Wagner M. Proceedings of the National Academy of Sciences of the United States of America. 2008. 18250313
A nested array of rRNA targeted probes for the detection and identification of enterococci by reverse hybridization. Behr T, Koob C, Schedl M, Mehlen A, Meier H, Knopp D, Frahm E, Obst U, Schleifer K, Niessner R, Ludwig W. Systematic and applied microbiology. 2000. 11249027
A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont. Huber H, Hohn MJ, Rachel R, Fuchs T, Wimmer VC, Stetter KO. Nature. 2002. 11986665