List of references at probeBase

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Reference title Pubmed-ID
Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Amann RI, Binder BJ, Olson RJ, Chisholm SW, Devereux R, Stahl DA. Applied and environmental microbiology. 1990. 2200342
Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations. Juretschko S, Timmermann G, Schmid M, Schleifer KH, Pommerening-Röser A, Koops HP, Wagner M. Applied and environmental microbiology. 1998. 9687471
Combining catalyzed reporter deposition-fluorescence in situ hybridization and microautoradiography to detect substrate utilization by bacteria and Archaea in the deep ocean. Teira E, Reinthaler T, Pernthaler A, Pernthaler J, Herndl GJ. Applied and environmental microbiology. 2004. 15240332
Community analysis of biofilters using fluorescence in situ hybridization including a new probe for the Xanthomonas branch of the class Proteobacteria. Friedrich U, Naismith MM, Altendorf K, Lipski A. Applied and environmental microbiology. 1999. 10427047
Community structure and activity dynamics of nitrifying bacteria in a phosphate-removing biofilm. Gieseke A, Purkhold U, Wagner M, Amann R, Schramm A. Applied and environmental microbiology. 2001. 11229931
Community structure, cellular rRNA content, and activity of sulfate-reducing bacteria in marine arctic sediments. Ravenschlag K, Sahm K, Knoblauch C, Jørgensen BB, Amann R. Applied and environmental microbiology. 2000. 10919825
Comparative analysis of human gut microbiota by barcoded pyrosequencing. Andersson AF, Lindberg M, Jakobsson H, Bäckhed F, Nyrén P, Engstrand L. PloS one. 2008. 18665274
Comparative analysis of nitrifying bacteria associated with freshwater and marine aquaria. Hovanec TA, DeLong EF. Applied and environmental microbiology. 1996. 8702281
Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine. Claesson MJ, O'Sullivan O, Wang Q, Nikkilä J, Marchesi JR, Smidt H, de Vos WM, Ross RP, O'Toole PW. PloS one. 2009. 19693277
Comparative study of bacterial groups within the human cecal and fecal microbiota. Marteau P, Pochart P, Doré J, Béra-Maillet C, Bernalier A, Corthier G. Applied and environmental microbiology. 2001. 11571208
Comparison of rhizobacterial community composition in soil suppressive or conducive to tobacco black root rot disease. Kyselková M, Kopecký J, Frapolli M, Défago G, Ságová-Marecková M, Grundmann GL, Moënne-Loccoz Y. The ISME journal. 2009. 19554036
Comparison of vertical distributions of prokaryotic assemblages in the anoxic Cariaco Basin and Black Sea by use of fluorescence in situ hybridization. Lin X, Wakeham SG, Putnam IF, Astor YM, Scranton MI, Chistoserdov AY, Taylor GT. Applied and environmental microbiology. 2006. 16597973
Concentration-dependent response of estrone-degrading bacterial community in activated sludge analyzed by microautoradiography-fluorescence in situ hybridization. Thayanukul P, Zang K, Janhom T, Kurisu F, Kasuga I, Furumai H. Water research. 2010. 20705312
Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies. Wang Y, Qian PY. PloS one. 2009. 19816594
Criblamydia sequanensis, a new intracellular Chlamydiales isolated from Seine river water using amoebal co-culture. Thomas V, Casson N, Greub G. Environmental microbiology. 2006. 17107554
Crohn's disease of the colon. -. Gastroenterology. 1979. 34556
Cultivation and in situ detection of a thermophilic bacterium capable of oxidizing propionate in syntrophic association with hydrogenotrophic methanogens in a thermophilic methanogenic granular sludge. Imachi H, Sekiguchi Y, Kamagata Y, Ohashi A, Harada H. Applied and environmental microbiology. 2000. 10919827
Culturability and In situ abundance of pelagic bacteria from the North Sea. Eilers H, Pernthaler J, Glöckner FO, Amann R. Applied and environmental microbiology. 2000. 10877804
Culture independent and rapid identification of bacterial pathogens in necrotising fasciitis and streptococcal toxic shock syndrome by fluorescence in situ hybridisation. Trebesius K, Leitritz L, Adler K, Schubert S, Autenrieth IB, Heesemann J. Medical microbiology and immunology. 2000. 10917153
Degradative capacities and 16S rRNA-targeted whole-cell hybridization of sulfate-reducing bacteria in an anaerobic enrichment culture utilizing alkylbenzenes from crude oil. Rabus R, Fukui M, Wilkes H, Widdle F. Applied and environmental microbiology. 1996. 8837415
Demonstration of Brachyspira aalborgi lineages 2 and 3 in human colonic biopsies with intestinal spirochaetosis by specific fluorescent in situ hybridization. Jensen TK, Teglbjaerg PS, Lindboe CF, Boye M. Journal of medical microbiology. 2004. 15017292
Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Ferris MJ, Muyzer G, Ward DM. Applied and environmental microbiology. 1996. 8593039
Denitrification at pH 4 by a soil-derived Rhodanobacter-dominated community. van den Heuvel RN, van der Biezen E, Jetten MS, Hefting MM, Kartal B. Environmental microbiology. 2010. 20649643
Design and application of an oligonucleotide microarray for the investigation of compost microbial communities. Franke-Whittle IH, Klammer SH, Insam H. Journal of microbiological methods. 2005. 15823393
Design and application of oligonucleotide probes for fluorescent in situ identification of the filamentous bacterial morphotype Nostocoida limicola in activated sludge. Liu JR, Seviour RJ. Environmental microbiology. 2001. 11683865