List of references at probeBase

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Reference title Pubmed-ID
Polynucleobacter bacteria in the brackish-water species Euplotes harpa (Ciliata Hypotrichia). Vannini C, Petroni G, Verni F, Rosati G. The Journal of eukaryotic microbiology. -. 15817116
Polyphasic microbial community analysis of petroleum hydrocarbon-contaminated soils from two northern Canadian communities. Juck D, Charles T, Whyte LG, Greer CW. FEMS microbiology ecology. 2000. 11098075
Population analysis in a denitrifying sand filter: conventional and in situ identification of Paracoccus spp. in methanol-fed biofilms. Neef A, Zaglauer A, Meier H, Amann R, Lemmer H, Schleifer KH. Applied and environmental microbiology. 1996. 8953706
Population structure of microbial communities associated with two deep, anaerobic, alkaline aquifers. Fry NK, Fredrickson JK, Fishbain S, Wagner M, Stahl DA. Applied and environmental microbiology. 1997. 9097447
Potential of a 16S rRNA-based taxonomic microarray for analyzing the rhizosphere effects of maize on Agrobacterium spp. and bacterial communities. Sanguin H, Remenant B, Dechesne A, Thioulouse J, Vogel TM, Nesme X, Moënne-Loccoz Y, Grundmann GL. Applied and environmental microbiology. 2006. 16751545
Previously unknown and phylogenetically diverse members of the green nonsulfur bacteria are indigenous to freshwater lakes. Gich F, Garcia-Gil J, Overmann J. Archives of microbiology. 2001. 11797038
PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers. Walters WA, Caporaso JG, Lauber CL, Berg-Lyons D, Fierer N, Knight R. Bioinformatics (Oxford, England). 2011. 21349862
PRIMROSE: a computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database. Ashelford KE, Weightman AJ, Fry JC. Nucleic acids research. 2002. 12140334
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Muyzer G, de Waal EC, Uitterlinden AG. Applied and environmental microbiology. 1993. 7683183
Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities. Denef VJ, Kalnejais LH, Mueller RS, Wilmes P, Baker BJ, Thomas BC, VerBerkmoes NC, Hettich RL, Banfield JF. Proceedings of the National Academy of Sciences of the United States of America. 2010. 20133593
Putative glycogen-accumulating organisms belonging to the Alphaproteobacteria identified through rRNA-based stable isotope probing. Meyer RL, Saunders AM, Blackall LL. Microbiology (Reading, England). 2006. 16436430
Pyrosequencing analysis of the oral microflora of healthy adults. Keijser BJ, Zaura E, Huse SM, van der Vossen JM, Schuren FH, Montijn RC, ten Cate JM, Crielaard W. Journal of dental research. 2008. 18946007
Quantification of bacterial groups within human fecal flora by oligonucleotide probe hybridization. Sghir A, Gramet G, Suau A, Rochet V, Pochart P, Dore J. Applied and environmental microbiology. 2000. 10788414
Quantification of different Eubacterium spp. in human fecal samples with species-specific 16S rRNA-targeted oligonucleotide probes. Schwiertz A, Le Blay G, Blaut M. Applied and environmental microbiology. 2000. 10618251
Quantification of Gordona amarae strains in foaming activated sludge and anaerobic digester systems with oligonucleotide hybridization probes. de los Reyes MF, de los Reyes FL, Hernandez M, Raskin L. Applied and environmental microbiology. 1998. 9647822
Quantification of Hyphomicrobium populations in activated sludge from an industrial wastewater treatment system as determined by 16S rRNA analysis. Layton AC, Karanth PN, Lajoie CA, Meyers AJ, Gregory IR, Stapleton RD, Taylor DE, Sayler GS. Applied and environmental microbiology. 2000. 10698787
Quantification of syntrophic fatty acid-beta-oxidizing bacteria in a mesophilic biogas reactor by oligonucleotide probe hybridization. Hansen KH, Ahring BK, Raskin L. Applied and environmental microbiology. 1999. 10543784
Quantification of the flavonoid-degrading bacterium Eubacterium ramulus in human fecal samples with a species-specific oligonucleotide hybridization probe. Simmering R, Kleessen B, Blaut M. Applied and environmental microbiology. 1999. 10427069
Quantification of uncultured Ruminococcus obeum-like bacteria in human fecal samples by fluorescent in situ hybridization and flow cytometry using 16S rRNA-targeted probes. Zoetendal EG, Ben-Amor K, Harmsen HJ, Schut F, Akkermans AD, de Vos WM. Applied and environmental microbiology. 2002. 12200269
Quantitative distributions of Epsilonproteobacteria and a Sulfurimonas subgroup in pelagic redoxclines of the central Baltic Sea. Grote J, Labrenz M, Pfeiffer B, Jost G, Jürgens K. Applied and environmental microbiology. 2007. 17921285
Quantitative fluorescence in situ hybridization of Bifidobacterium spp. with genus-specific 16S rRNA-targeted probes and its application in fecal samples. Langendijk PS, Schut F, Jansen GJ, Raangs GC, Kamphuis GR, Wilkinson MH, Welling GW. Applied and environmental microbiology. 1995. 7487040
Quantitative fluorescence in situ hybridization of microbial communities in the rumens of cattle fed different diets. Kong Y, He M, McAlister T, Seviour R, Forster R. Applied and environmental microbiology. 2010. 20802069
Quantitative use of fluorescent in situ hybridization to examine relationships between mycolic acid-containing actinomycetes and foaming in activated sludge plants. Davenport RJ, Curtis TP, Goodfellow M, Stainsby FM, Bingley M. Applied and environmental microbiology. 2000. 10698786
Rapid and easy detection of Helicobacter pylori by in situ hybridization. Park CS, Kim J. Journal of Korean medical science. 1999. 10102518
Rapid and specific detection of Helicobacter pylori macrolide resistance in gastric tissue by fluorescent in situ hybridisation. Trebesius K, Panthel K, Strobel S, Vogt K, Faller G, Kirchner T, Kist M, Heesemann J, Haas R. Gut. 2000. 10764702