List of probes and primers

2970 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
H7-1014 S-*-H7-1014-a-A-18 bacteria of relevance in wastewater treatment 16S activated sludge clone H7 ✔ ✘
S3-486 S-*-S3-0486-a-A-18 bacteria of relevance in wastewater treatment 16S activated sludge clone S3 ✘ ✘
OTU26-650 S-*-OTU26-0650-a-A-18 bacteria of relevance in wastewater treatment 16S activated sludge clones A11b, A30, H1, H19 ✔ ✘
OTU3-445 S-*-OTU3-0445-a-A-20 bacteria of relevance in wastewater treatment 16S activated sludge clones A13, H12, H20, H23, S28, S40 ✔ ✘
OTU32-208 S-*-OTU32-0208-a-A-18 bacteria of relevance in wastewater treatment 16S activated sludge clones A31, S47 ✔ ✘
OTU32-630 S-*-OTU32-0630-a-A-18 bacteria of relevance in wastewater treatment 16S activated sludge clones A31, S47 ✔ ✘
OTU2-132 (ATDe132) S-*-ATDe-0132-a-A-18 bacteria of relevance in wastewater treatment 16S Activated sludge clones A33, H25, H30, H35, S3, S10, and S23 of the Azoarcus-Thauera-Denitromonas lineage ✔ ✘
ATDe442 S-*-ATDe-0442-a-A-18 bacteria of relevance in wastewater treatment 16S Activated sludge clones A33, H25, H30, H35, S3, S10, and S23 of the Azoarcus-Thauera-Denitromonas lineage ✘ ✘
ATDe830 S-*-ATDe-0830-a-A-18 bacteria of relevance in wastewater treatment 16S Activated sludge clones A33, H25, H30, H35, S3, S10, and S23 of the Azoarcus-Thauera-Denitromonas lineage ✘ ✘
ATDe467 S-*-ATDe-0467-a-A-18 bacteria of relevance in wastewater treatment 16S Activated sludge clones A33, H25, H30, H35, S3, S10, and S23 of the Azoarcus-Thauera-Denitromonas lineage ✘ ✘
OTU2-467 S-*-OTU2-0467-a-A-20 bacteria of relevance in wastewater treatment 16S activated sludge clones A33, H25, H30, H35, S3, S10, S23 ✔ ✘
OTU28-1346 S-*-OTU28-1346-a-A-18 bacteria of relevance in wastewater treatment 16S activated sludge clones H39, S41 ✔ ✘
OTU16-1027 S-*-OTU16-1027-a-A-18 bacteria of relevance in wastewater treatment 16S activated sludge clones H4, H6, H29, S7 ✔ ✘
OTU16-1350 S-*-OTU16-1350-a-A-18 bacteria of relevance in wastewater treatment 16S activated sludge clones H4, H6, H29, S7 ✔ ✘
OTU45-720 S-*-OTU45-0720-a-A-20 bacteria of relevance in wastewater treatment 16S activated sludge clones H44 and S6, soil clone C105, soil clone 11-25, Antarctic lake ice clone LB3-30 ✔ ✘
OTU17-66 S-*-OTU17-0066-a-A-20 bacteria of relevance in wastewater treatment 16S activated sludge clones H46, S43 ✔ ✘
OTU31-656 S-*-OTU31-0656-a-A-18 bacteria of relevance in wastewater treatment 16S activated sludge clones H8, S9 ✔ ✘
AERO1244 S-G-Aero-1244-a-A-21 higher taxonomic levels 16S Aeromonadaceae ✔ ✘
AEHY — - 16S Aeromonas hydrophila ✘ ✘
KO 228 S-*-AhydA-0466-a-A-23 - 16S Aeromonas hydrophila, A. Salmonicida ✘ ✘
KO 229 S-*-AhydB-0454-a-A-21 - 16S Aeromonas hydrophila, A. Salmonicida ✘ ✘
Aesal1 — - 16S Aeromonas salmonicida cluster ✘ ✘
AESA — - 16S Aeromonas salmonicida subsp. Salmonicida ✘ ✘
Afipia2 — - 16S Afipia ✘ ✘
AgroAT41m — - 16S Agrobacterium (Biovar 1 and A. rubi) ✘ ✘