List of probes and primers

2970 probes found.

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Probe name Full name (Alm et al.) Category Target rRNA Specificity FISH Primer
LEG705 — bacteria of medical or hygienical relevance 16S Legionella ✔ ✘
Clit135 S-*-Clit-0135-a-A-19 - 16S some of the Clostridium lituseburense group (Clostridium cluster XI) ✔ ✘
E2d21002 S-*-Rhob-1002-a-A-18 bacteria of relevance in wastewater treatment 16S some Rhodobacteraceae ✔ ✘
LEGPNE1 — bacteria of medical or hygienical relevance 16S Legionella pneumophila ✔ ✘
Chis150 S-*-Chis-0150-a-A-23 bacteria of medical or hygienical relevance 16S most of the Clostridium histolyticum group (Clostridium cluster I and II) ✔ ✘
E1e3 1150 S-*-Ualp-1150-a-A-18 bacteria of relevance in wastewater treatment 16S some unclassified Alphaproteobacteria ✔ ✘
LGC354A — higher taxonomic levels 16S Firmicutes (Gram-positive bacteria with low G+C content) ✔ ✘
Erec482 S-*-Erec-0482-a-A-19 animal and human associated microbiota, intestinal microbiota 16S most of the Clostridium coccoides-Eubacterium rectale group (Clostridium cluster XIVa and XIVb) ✔ ✘
Ualp-1109 S-*-Ualp-1109-a-A-18 bacteria of relevance in wastewater treatment 16S some unclassified Alphaproteobacteria ✔ ✘
LGC354B — higher taxonomic levels 16S Firmicutes (Gram-positive bacteria with low G+C content) ✔ ✘
Strc493 S-*-Strc-0493-a-A-19 - 16S most Streptococcus spp. and some Lactococcus spp. ✔ ✘
Sphm-0742 S-*-Sphm-0742-a-A-18 bacteria of relevance in wastewater treatment 16S some Sphingomonadales ✔ ✘
LGC354C — higher taxonomic levels 16S Firmicutes (Gram-positive bacteria with low G+C content) ✔ ✘
Bete-1250 S-*-Bete-1250-a-A-18 bacteria of relevance in wastewater treatment 16S some unclassified Bacteroidetes ✔ ✘
GB — bacteria of relevance in wastewater treatment 16S novel gammaproteobacterial group ✔ ✘
Bete-1419 S-*-Bete-1419-a-A-18 bacteria of relevance in wastewater treatment 16S some unclassified Bacteroidetes ✔ ✘
GB_G1 (GAOQ989) — bacteria of relevance in wastewater treatment 16S novel gammaproteobacterial group ✔ ✘
Chro-1137 S-*-Chro-1137-a-A-18 bacteria of relevance in wastewater treatment 16S some Chromatiales ✔ ✘
GB_G2 — bacteria of relevance in wastewater treatment 16S novel gammaproteobacterial group ✔ ✘
Caul-1262 S-*-Caul-1262-a-A-18 bacteria of relevance in wastewater treatment 16S some Caulobacterales ✔ ✘
MB1174 — methanogenic archaea 16S Methanobacterium spp., Methanobrevibacter spp., Methanosphaera spp. ✔ ✘
Ubac-1430 S-*-Ubac-1430-a-A-18 bacteria of relevance in wastewater treatment 16S some unclassified Bacteria ✔ ✘
Ubac-1241 S-*-Ubac-1241-a-A-18 bacteria of relevance in wastewater treatment 16S some unclassified Bacteria ✔ ✘
PDD8_644 — symbiotic microbes 16S Candidatus Cochliophilus cryoturris, symbiont of Cochliopodium minus ✔ ✘
uBet-0984 S-*-uBet-0984-a-A-18 bacteria of relevance in wastewater treatment 16S some unclassified Betaproteobacteria ✔ ✘